Header list of 1xsa.pdb file
Complete list - v 10 2 Bytes
HEADER HYDROLASE 18-OCT-04 1XSA
TITLE STRUCTURE OF THE NUDIX ENZYME AP4A HYDROLASE FROM HOMO SAPIENS (E63A
TITLE 2 MUTANT)
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: BIS(5'-NUCLEOSYL)-TETRAPHOSPHATASE;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: DIADENOSINE 5',5'''-P1,P4-TETRAPHOSPHATE ASYMMETRICAL
COMPND 5 HYDROLASE, DIADENOSINE TETRAPHOSPHATASE, AP4A HYDROLASE, AP4AASE;
COMPND 6 EC: 3.6.1.17;
COMPND 7 ENGINEERED: YES;
COMPND 8 MUTATION: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);
SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-6-P3
KEYWDS NUDIX ENZYME, HUMAN AP4A HYDROLASE, ALPHA-BETA, HYDROLASE
EXPDTA SOLUTION NMR
NUMMDL 33
AUTHOR J.D.SWARBRICK,S.BUYYA,D.GUNAWARDANA,K.R.GAYLER,A.G.MCLENNAN,
AUTHOR 2 P.R.GOOLEY
REVDAT 4 10-NOV-21 1XSA 1 REMARK SEQADV
REVDAT 3 24-FEB-09 1XSA 1 VERSN
REVDAT 2 22-MAR-05 1XSA 1 JRNL AUTHOR
REVDAT 1 21-DEC-04 1XSA 0
JRNL AUTH J.D.SWARBRICK,S.BUYYA,D.GUNAWARDANA,K.R.GAYLER,A.G.MCLENNAN,
JRNL AUTH 2 P.R.GOOLEY
JRNL TITL STRUCTURE AND SUBSTRATE-BINDING MECHANISM OF HUMAN AP4A
JRNL TITL 2 HYDROLASE
JRNL REF J.BIOL.CHEM. V. 280 8471 2005
JRNL REFN ISSN 0021-9258
JRNL PMID 15596429
JRNL DOI 10.1074/JBC.M412318200
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : CYANA 1.0.7, XPLOR-NIH 2.9.1
REMARK 3 AUTHORS : P. GUNTERT (CYANA),
REMARK 3 C.D.SCHWIETERS,J.J.KUSZEWSKI,N.TJANDRA,G.M.CLORE
REMARK 3 (XPLOR-NIH)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 1XSA COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-OCT-04.
REMARK 100 THE DEPOSITION ID IS D_1000030709.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 293
REMARK 210 PH : 6.5
REMARK 210 IONIC STRENGTH : 51MM
REMARK 210 PRESSURE : AMBIENT
REMARK 210 SAMPLE CONTENTS : 1.0MM HUMAN AP4A HYDROLASE;
REMARK 210 1.0MM HUMAN AP4A HYDROLASE
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : C HSQC-NOESY; 3D_15N
REMARK 210 -SEPARATED_NOESY; C NOESY-HSQC
REMARK 210 (AROMATIC REGION)
REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ
REMARK 210 SPECTROMETER MODEL : INOVA
REMARK 210 SPECTROMETER MANUFACTURER : VARIAN
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NULL
REMARK 210 METHOD USED : CANDID WITH TALOS FOR NOE
REMARK 210 ASSIGNMENTS. XPLOR-NIH WITH RAMA
REMARK 210 POT. FURTHER REFINE AGAINST CACB
REMARK 210 SHIFTS
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 100
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 33
REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: RESIDUES 1 AND 2 ARE CHANGED FROM GP TO ALANINE IN THE
REMARK 210 CALCULATIONS. THESE ARE NON NATIVE FROM PRECISSION CLEAVAGE SITE
REMARK 210 AND ARE UNSTRUCTURED.
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 H LYS A 47 HE2 GLU A 67 1.17
REMARK 500 HH TYR A 87 HZ3 LYS A 94 1.27
REMARK 500 O ALA A 138 H GLU A 142 1.33
REMARK 500 H ALA A 10 O THR A 95 1.33
REMARK 500 O LEU A 85 HD21 ASN A 86 1.41
REMARK 500 O GLU A 135 H ALA A 139 1.43
REMARK 500 H PHE A 31 O LEU A 122 1.45
REMARK 500 O LEU A 147 H ILE A 150 1.45
REMARK 500 H ILE A 14 O TRP A 99 1.46
REMARK 500 O GLU A 79 H PHE A 81 1.47
REMARK 500 O ALA A 60 HG1 THR A 64 1.48
REMARK 500 OG1 THR A 44 HZ1 LYS A 47 1.57
REMARK 500 N LEU A 85 O VAL A 96 2.05
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 MET A 6 163.60 46.62
REMARK 500 1 LYS A 23 -98.35 -107.28
REMARK 500 1 ASP A 25 7.78 -177.53
REMARK 500 1 ASN A 27 145.78 54.82
REMARK 500 1 HIS A 41 75.23 77.97
REMARK 500 1 PRO A 46 92.85 -61.76
REMARK 500 1 ILE A 77 92.49 -67.80
REMARK 500 1 GLU A 79 -116.08 60.97
REMARK 500 1 LYS A 82 138.29 -173.82
REMARK 500 1 ALA A 89 -121.76 36.56
REMARK 500 1 ASN A 91 30.83 165.22
REMARK 500 1 PRO A 93 -79.02 -44.27
REMARK 500 1 LYS A 94 119.10 54.41
REMARK 500 1 HIS A 114 92.87 -39.86
REMARK 500 1 GLU A 115 -63.13 173.36
REMARK 500 1 GLN A 132 -6.62 68.82
REMARK 500 1 ILE A 150 -143.97 -92.15
REMARK 500 2 SER A 5 175.39 -56.93
REMARK 500 2 MET A 6 157.95 59.84
REMARK 500 2 LEU A 8 -68.95 -132.98
REMARK 500 2 LYS A 23 -102.13 -124.01
REMARK 500 2 ASP A 25 9.56 -174.18
REMARK 500 2 ALA A 28 -19.06 63.32
REMARK 500 2 HIS A 41 55.44 74.51
REMARK 500 2 PRO A 52 7.12 -61.25
REMARK 500 2 GLU A 67 -85.96 -78.03
REMARK 500 2 GLU A 79 -122.10 62.40
REMARK 500 2 ALA A 89 -87.63 25.01
REMARK 500 2 ARG A 90 49.08 -95.84
REMARK 500 2 PRO A 93 63.35 -59.32
REMARK 500 2 HIS A 114 75.09 -50.87
REMARK 500 2 GLU A 115 -37.41 -164.09
REMARK 500 2 GLN A 117 30.46 -145.15
REMARK 500 2 GLN A 132 -3.65 67.36
REMARK 500 2 ILE A 150 -145.01 -101.26
REMARK 500 3 LEU A 3 -159.43 45.75
REMARK 500 3 SER A 5 -112.31 168.41
REMARK 500 3 LEU A 8 -71.96 -128.79
REMARK 500 3 LYS A 23 -101.25 -94.08
REMARK 500 3 ASP A 25 0.46 -178.46
REMARK 500 3 ASN A 27 161.77 55.32
REMARK 500 3 ILE A 40 -117.60 -175.77
REMARK 500 3 PRO A 46 92.90 -66.03
REMARK 500 3 GLU A 79 -124.17 58.05
REMARK 500 3 ALA A 89 -114.52 37.01
REMARK 500 3 ASN A 91 37.43 159.34
REMARK 500 3 PRO A 93 75.17 -63.31
REMARK 500 3 VAL A 108 151.31 -41.52
REMARK 500 3 HIS A 114 96.62 -38.86
REMARK 500 3 GLU A 115 -62.40 174.99
REMARK 500
REMARK 500 THIS ENTRY HAS 555 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 1XSB RELATED DB: PDB
REMARK 900 THE SAME PROTEIN(E63A) OF ATP STRUCTURE IN COMPLEX WITH ATP
REMARK 900 RELATED ID: 1XSC RELATED DB: PDB
REMARK 900 THE SAME PROTEIN(E63A) OF ATP BOUND STRUCTURE INCLUDING ATP
REMARK 900 CONSTRAINTS
REMARK 900 RELATED ID: 6330 RELATED DB: BMRB
REMARK 900 ASSIGNMENTS OF HUMAN AP4A HYDROLASE
DBREF 1XSA A 6 152 UNP P50583 AP4A_HUMAN 0 146
SEQADV 1XSA GLY A 1 UNP P50583 CLONING ARTIFACT
SEQADV 1XSA PRO A 2 UNP P50583 CLONING ARTIFACT
SEQADV 1XSA LEU A 3 UNP P50583 CLONING ARTIFACT
SEQADV 1XSA GLY A 4 UNP P50583 CLONING ARTIFACT
SEQADV 1XSA SER A 5 UNP P50583 CLONING ARTIFACT
SEQADV 1XSA ALA A 63 UNP P50583 GLU 57 ENGINEERED MUTATION
SEQADV 1XSA LEU A 153 UNP P50583 CLONING ARTIFACT
SEQRES 1 A 153 GLY PRO LEU GLY SER MET ALA LEU ARG ALA CYS GLY LEU
SEQRES 2 A 153 ILE ILE PHE ARG ARG CYS LEU ILE PRO LYS VAL ASP ASN
SEQRES 3 A 153 ASN ALA ILE GLU PHE LEU LEU LEU GLN ALA SER ASP GLY
SEQRES 4 A 153 ILE HIS HIS TRP THR PRO PRO LYS GLY HIS VAL GLU PRO
SEQRES 5 A 153 GLY GLU ASP ASP LEU GLU THR ALA LEU ARG ALA THR GLN
SEQRES 6 A 153 GLU GLU ALA GLY ILE GLU ALA GLY GLN LEU THR ILE ILE
SEQRES 7 A 153 GLU GLY PHE LYS ARG GLU LEU ASN TYR VAL ALA ARG ASN
SEQRES 8 A 153 LYS PRO LYS THR VAL ILE TYR TRP LEU ALA GLU VAL LYS
SEQRES 9 A 153 ASP TYR ASP VAL GLU ILE ARG LEU SER HIS GLU HIS GLN
SEQRES 10 A 153 ALA TYR ARG TRP LEU GLY LEU GLU GLU ALA CYS GLN LEU
SEQRES 11 A 153 ALA GLN PHE LYS GLU MET LYS ALA ALA LEU GLN GLU GLY
SEQRES 12 A 153 HIS GLN PHE LEU CYS SER ILE GLU ALA LEU
HELIX 1 1 ASP A 55 ALA A 68 1 14
HELIX 2 2 GLU A 71 GLY A 73 5 3
HELIX 3 3 GLY A 123 GLN A 132 1 10
HELIX 4 4 PHE A 133 SER A 149 1 17
SHEET 1 A11 TRP A 43 THR A 44 0
SHEET 2 A11 ILE A 29 ALA A 36 -1 N LEU A 34 O THR A 44
SHEET 3 A11 HIS A 116 LEU A 122 -1 N GLN A 117 O GLN A 35
SHEET 4 A11 ILE A 29 ALA A 36 -1 N PHE A 31 O LEU A 122
SHEET 5 A11 ARG A 9 ARG A 18 -1 O ILE A 15 N LEU A 32
SHEET 6 A11 LYS A 47 HIS A 49 -1 O GLY A 48 N CYS A 11
SHEET 7 A11 ARG A 9 ARG A 18 -1 N CYS A 11 O GLY A 48
SHEET 8 A11 THR A 95 VAL A 103 1 O THR A 95 N ALA A 10
SHEET 9 A11 LEU A 75 ILE A 77 -1 N THR A 76 O GLU A 102
SHEET 10 A11 THR A 95 VAL A 103 -1 O GLU A 102 N THR A 76
SHEET 11 A11 GLU A 84 ASN A 86 -1 O LEU A 85 N VAL A 96
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - v 10 2 Bytes