Header list of 1xjs.pdb file
Complete list - r 2 2 Bytes
HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 24-SEP-04 1XJS
TITLE SOLUTION STRUCTURE OF IRON-SULFUR CLUSTER ASSEMBLY PROTEIN ISCU FROM
TITLE 2 BACILLUS SUBTILIS, WITH ZINC BOUND AT THE ACTIVE SITE. NORTHEAST
TITLE 3 STRUCTURAL GENOMICS CONSORTIUM TARGET SR17
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: NIFU-LIKE PROTEIN;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: IRON-SULFUR CLUSTER ASSEMBLY PROTEIN ISCU;
COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS;
SOURCE 3 ORGANISM_TAXID: 1423;
SOURCE 4 GENE: NIFU;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PMGK;
SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21D
KEYWDS SR17, AUTOSTRUCTURE, IRON-SULFUR, ZINC, NORTHEAST STRUCTURAL GENOMICS
KEYWDS 2 CONSORTIUM, NESG, NIFU-LIKE, PROTEIN STRUCTURE INITIATIVE,
KEYWDS 3 STRUCTURAL GENOMICS, PSI, UNKNOWN FUNCTION
EXPDTA SOLUTION NMR
NUMMDL 10
AUTHOR G.J.KORNHABER,G.V.T.SWAPNA,T.A.RAMELOT,J.R.CORT,M.A.KENNEDY,
AUTHOR 2 G.T.MONTELIONE,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG)
REVDAT 4 02-MAR-22 1XJS 1 REMARK LINK
REVDAT 3 24-FEB-09 1XJS 1 VERSN
REVDAT 2 08-MAR-05 1XJS 1 AUTHOR
REVDAT 1 04-JAN-05 1XJS 0
JRNL AUTH G.J.KORNHABER,G.V.T.SWAPNA,T.A.RAMELOT,J.R.CORT,M.A.KENNEDY,
JRNL AUTH 2 G.T.MONTELIONE
JRNL TITL SOLUTION STRUCTURE OF IRON-SULFUR CLUSTER ASSEMBLY PROTEIN
JRNL TITL 2 ISCU FROM BACILLUS SUBTILIS, WITH ZINC BOUND AT THE ACTIVE
JRNL TITL 3 SITE. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET SR17.
JRNL REF TO BE PUBLISHED
JRNL REFN
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : AUTOASSIGN 1.9, X-PLOR 2.0.6, CNS 1.0
REMARK 3 AUTHORS : ZIMMERMAN, MOSELEY AND MONTELIONE (AUTOASSIGN),
REMARK 3 SCHWIETERS, ET AL. (X-PLOR), BRUNGER, ET AL. (CNS)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 1XJS COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-OCT-04.
REMARK 100 THE DEPOSITION ID IS D_1000030434.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 293
REMARK 210 PH : 6.5
REMARK 210 IONIC STRENGTH : 100MM
REMARK 210 PRESSURE : AMBIENT
REMARK 210 SAMPLE CONTENTS : 100MM POTASSIUM PHOSPHATE, 200MM
REMARK 210 GLYCEROL, 1MM DTT, 0.02% NAN3, 5%
REMARK 210 D2O, 95% H2O; 20MM SODIUM
REMARK 210 PHOSPHATE, 50MM SODIUM CHLORIDE,
REMARK 210 10MM DTT, 0.02% NAN3, 95% H2O, 5%
REMARK 210 D2O
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D-TOCSYS; 13C,1H-HSQC; 15N,1H
REMARK 210 -HSQC; 15N,1H-HSQC, 2D
REMARK 210 HOMONUCLEAR NOESY; 4D_13C-
REMARK 210 SEPARATED_NOESY; 3D_13C-
REMARK 210 SEPARATED_NOESY; 3D_15N-
REMARK 210 SEPARATED_NOESY; H/D EXCHANGE
REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 800 MHZ; 600 MHZ
REMARK 210 SPECTROMETER MODEL : INOVA
REMARK 210 SPECTROMETER MANUFACTURER : VARIAN
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : AUTOSTRUCTURE 2.0.0, TALOS 2.1,
REMARK 210 HYPER & PDBSTAT 3.2 AND 3.32,
REMARK 210 NMRPIPE 2.1, SPARKY 3.106
REMARK 210 METHOD USED : MINIMAL CONSTRAINT STRUCTURE
REMARK 210 CONTAINED 492 CONFORMATIONALLY
REMARK 210 RESTRICTING NOE-DERIVED DISTANCE
REMARK 210 CONSTRAINTS, 108 HYDROGEN BOND
REMARK 210 CONSTRAINTS, AND 197 DIHEDRAL
REMARK 210 ANGLE CONSTRAINTS. THIS RESULTED
REMARK 210 IN 5.9 CONSTRAINTS PER RESIDUE
REMARK 210 AND 1.2 LONG RANGE CONSTRAINTS
REMARK 210 PER RESIDUE. STRUCTURE
REMARK 210 DETERMINATION WAS PERFORMED WITH
REMARK 210 THE FOLLOWING STEPS:
REMARK 210 AUTOSTRUCTURE-DYANA WAS USED TO
REMARK 210 IDENTIFY DISTANCE CONSTRAINTS.
REMARK 210 THESE DISTANCE CONSTRAINTS WERE
REMARK 210 USED AS INPUT INTO A SIMULATED
REMARK 210 ANNEALING WITH XPLOR-NIH. THE
REMARK 210 TOP TEN STRUCTURES WERE ENERGY
REMARK 210 MINIMIZED WITH WATER USING CNS.
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 60
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10
REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST
REMARK 210 ENERGY
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK:
REMARK 210 THIS STRUCTURE WAS DETERMINED USING A SELECTIVE ISOTOPIC LABELING
REMARK 210 STRATEGY INVOLVING THE PROTONATION OF SPECIFIC RESIDUES IN A
REMARK 210 PERDEUTERATED BACKGROUND.
REMARK 210 PROTONATED ATOMS INCLUDE:
REMARK 210 ILE HD1, VAL HG*, LEU HD*.
REMARK 210 ALL TYR AND PHE SIDE-CHAINS ARE PROTONATED. IN ADDITION TO THE
REMARK 210 ATOMS MENTIONED ABOVE, EXCHANGEABLE ATOMS WERE PROTONATED.
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 HA LYS A 25 HA GLU A 62 1.20
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 LYS A 25 94.33 72.64
REMARK 500 1 ASP A 30 -72.88 -152.98
REMARK 500 1 SER A 31 -71.89 -113.88
REMARK 500 1 ASP A 52 72.54 -109.72
REMARK 500 1 ASP A 54 20.48 -142.66
REMARK 500 1 ILE A 55 -162.60 -127.37
REMARK 500 1 LYS A 83 -168.60 -127.55
REMARK 500 1 ASP A 84 -165.98 -120.15
REMARK 500 1 LYS A 102 -80.95 169.94
REMARK 500 1 GLU A 103 109.50 -166.20
REMARK 500 1 TYR A 104 142.05 -173.67
REMARK 500 1 ALA A 141 -175.84 68.86
REMARK 500 1 GLU A 143 -104.89 60.15
REMARK 500 2 ASN A 6 93.82 -49.93
REMARK 500 2 LEU A 7 -15.49 76.61
REMARK 500 2 ARG A 23 25.97 -162.99
REMARK 500 2 ASN A 24 36.93 -95.83
REMARK 500 2 ASP A 30 -73.35 -141.94
REMARK 500 2 SER A 31 -85.32 -95.26
REMARK 500 2 ASP A 52 67.14 -105.93
REMARK 500 2 LYS A 83 -155.53 -134.12
REMARK 500 2 LYS A 102 -89.00 -163.26
REMARK 500 2 GLU A 103 84.18 177.71
REMARK 500 2 ASP A 106 -78.43 58.10
REMARK 500 2 ALA A 141 178.21 74.43
REMARK 500 2 GLU A 143 -67.64 65.89
REMARK 500 2 GLU A 144 -44.13 -164.56
REMARK 500 3 ASN A 6 -79.70 -148.01
REMARK 500 3 LEU A 7 -43.39 -141.43
REMARK 500 3 LEU A 28 79.22 -115.80
REMARK 500 3 SER A 31 -104.31 -144.56
REMARK 500 3 PRO A 39 -79.88 -16.81
REMARK 500 3 ASP A 43 -71.03 -20.86
REMARK 500 3 ASP A 52 66.33 -114.25
REMARK 500 3 ILE A 55 -164.00 -110.21
REMARK 500 3 GLU A 57 -71.37 -81.70
REMARK 500 3 TYR A 104 141.89 -173.43
REMARK 500 3 LEU A 131 -70.92 -52.95
REMARK 500 3 ALA A 141 155.82 68.15
REMARK 500 3 GLU A 143 117.87 66.73
REMARK 500 3 GLU A 144 -88.30 -78.07
REMARK 500 4 SER A 2 40.11 -150.25
REMARK 500 4 ASN A 6 -76.65 -59.14
REMARK 500 4 ASN A 21 71.23 -117.95
REMARK 500 4 PRO A 22 38.50 -75.85
REMARK 500 4 ASP A 30 -90.85 -141.73
REMARK 500 4 SER A 31 -65.59 -108.39
REMARK 500 4 PRO A 39 40.31 -65.58
REMARK 500 4 THR A 40 -36.69 -178.10
REMARK 500 4 ASP A 54 30.13 -143.15
REMARK 500
REMARK 500 THIS ENTRY HAS 151 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN A 150 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 CYS A 41 SG
REMARK 620 2 ASP A 43 OD1 95.3
REMARK 620 3 ASP A 43 OD2 167.4 76.6
REMARK 620 4 CYS A 66 SG 104.3 158.9 85.3
REMARK 620 5 CYS A 128 SG 86.5 83.7 102.0 89.6
REMARK 620 N 1 2 3 4
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 150
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: SR17 RELATED DB: TARGETDB
DBREF 1XJS A 1 147 UNP O32163 NIFU_BACSU 1 147
SEQRES 1 A 147 MET SER PHE ASN ALA ASN LEU ASP THR LEU TYR ARG GLN
SEQRES 2 A 147 VAL ILE MET ASP HIS TYR LYS ASN PRO ARG ASN LYS GLY
SEQRES 3 A 147 VAL LEU ASN ASP SER ILE VAL VAL ASP MET ASN ASN PRO
SEQRES 4 A 147 THR CYS GLY ASP ARG ILE ARG LEU THR MET LYS LEU ASP
SEQRES 5 A 147 GLY ASP ILE VAL GLU ASP ALA LYS PHE GLU GLY GLU GLY
SEQRES 6 A 147 CYS SER ILE SER MET ALA SER ALA SER MET MET THR GLN
SEQRES 7 A 147 ALA ILE LYS GLY LYS ASP ILE GLU THR ALA LEU SER MET
SEQRES 8 A 147 SER LYS ILE PHE SER ASP MET MET GLN GLY LYS GLU TYR
SEQRES 9 A 147 ASP ASP SER ILE ASP LEU GLY ASP ILE GLU ALA LEU GLN
SEQRES 10 A 147 GLY VAL SER LYS PHE PRO ALA ARG ILE LYS CYS ALA THR
SEQRES 11 A 147 LEU SER TRP LYS ALA LEU GLU LYS GLY VAL ALA LYS GLU
SEQRES 12 A 147 GLU GLY GLY ASN
HET ZN A 150 1
HETNAM ZN ZINC ION
FORMUL 2 ZN ZN 2+
HELIX 1 1 LEU A 7 ASN A 21 1 15
HELIX 2 2 CYS A 66 LYS A 81 1 16
HELIX 3 3 ASP A 84 LYS A 102 1 19
HELIX 4 4 LEU A 110 SER A 120 1 11
HELIX 5 5 ARG A 125 VAL A 140 1 16
SHEET 1 A 3 ILE A 32 ASN A 37 0
SHEET 2 A 3 ARG A 44 LYS A 50 -1 O LEU A 47 N VAL A 34
SHEET 3 A 3 ASP A 58 GLU A 64 -1 O GLU A 64 N ARG A 44
LINK SG CYS A 41 ZN ZN A 150 1555 1555 2.47
LINK OD1 ASP A 43 ZN ZN A 150 1555 1555 1.66
LINK OD2 ASP A 43 ZN ZN A 150 1555 1555 1.75
LINK SG CYS A 66 ZN ZN A 150 1555 1555 2.43
LINK SG CYS A 128 ZN ZN A 150 1555 1555 2.59
SITE 1 AC1 4 CYS A 41 ASP A 43 CYS A 66 CYS A 128
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - r 2 2 Bytes