Header list of 1x5y.pdb file
Complete list - r 2 2 Bytes
HEADER CELL ADHESION 17-MAY-05 1X5Y
TITLE SOLUTION STRUCTURE OF THE FIBRONECTIN TYPE-III DOMAIN OF MOUSE MYOSIN-
TITLE 2 BINDING PROTEIN C, FAST-TYPE HOMOLOG
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: MYOSIN BINDING PROTEIN C, FAST-TYPE;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: FIBRONECTIN TYPE-III DOMAIN;
COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS;
SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE;
SOURCE 4 ORGANISM_TAXID: 10090;
SOURCE 5 GENE: MYBPC2;
SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P041012-11;
SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS FAST MYBP-C, FIBRONECTIN TYPE III DOMAIN CONTAINING PROTEIN,
KEYWDS 2 CYTOSKELETON, MUSCLE CONTRACTION, STRUCTURAL GENOMICS, NPPSFA,
KEYWDS 3 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES,
KEYWDS 4 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, CELL ADHESION
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR M.YONEYAMA,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN
AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 4 02-MAR-22 1X5Y 1 REMARK SEQADV
REVDAT 3 24-FEB-09 1X5Y 1 VERSN
REVDAT 2 17-JAN-06 1X5Y 1 JRNL TITLE
REVDAT 1 17-NOV-05 1X5Y 0
JRNL AUTH M.YONEYAMA,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA
JRNL TITL SOLUTION STRUCTURE OF THE FIBRONECTIN TYPE-III DOMAIN OF
JRNL TITL 2 MOUSE MYOSIN-BINDING PROTEIN C, FAST-TYPE HOMOLOG
JRNL REF TO BE PUBLISHED
JRNL REFN
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 1.0.8
REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 1X5Y COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-MAY-05.
REMARK 100 THE DEPOSITION ID IS D_1000024420.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 296
REMARK 210 PH : 7.0
REMARK 210 IONIC STRENGTH : 120
REMARK 210 PRESSURE : AMBIENT
REMARK 210 SAMPLE CONTENTS : 1.47MM FN3 DOMAIN U-15N, 13C;
REMARK 210 20MM D-TRIS-HCL (PH7.0); 100MM
REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 10%
REMARK 210 D2O
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C
REMARK 210 -SEPARATED_NOESY
REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ
REMARK 210 SPECTROMETER MODEL : AVANCE
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4,
REMARK 210 KUJIRA 0.9295, CYANA 1.0.8
REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 100
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20
REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH
REMARK 210 THE LOWEST ENERGY, STRUCTURES
REMARK 210 WITH THE LEAST RESTRAINT
REMARK 210 VIOLATIONS
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 SER A 3 116.80 -168.74
REMARK 500 1 THR A 9 175.66 -49.29
REMARK 500 1 ALA A 11 161.35 -45.28
REMARK 500 1 THR A 21 -157.93 -105.98
REMARK 500 1 ILE A 35 -63.41 -104.61
REMARK 500 1 CYS A 66 52.43 -90.82
REMARK 500 1 ASP A 72 84.59 59.84
REMARK 500 1 THR A 96 147.71 -38.72
REMARK 500 1 ILE A 103 101.89 67.25
REMARK 500 1 ARG A 104 148.55 -178.82
REMARK 500 1 SER A 110 89.06 54.37
REMARK 500 2 THR A 9 166.66 -45.72
REMARK 500 2 ALA A 11 163.25 -47.88
REMARK 500 2 THR A 21 -159.59 -115.94
REMARK 500 2 ARG A 34 75.64 -105.50
REMARK 500 2 ASP A 72 80.69 55.49
REMARK 500 2 ASN A 87 173.53 177.44
REMARK 500 2 ILE A 103 100.99 64.79
REMARK 500 2 ARG A 104 145.71 -178.88
REMARK 500 2 SER A 109 -75.60 65.30
REMARK 500 3 THR A 9 176.81 -49.43
REMARK 500 3 ALA A 11 157.28 -44.42
REMARK 500 3 THR A 21 -157.60 -99.54
REMARK 500 3 ILE A 35 -79.03 -106.76
REMARK 500 3 ALA A 37 43.35 174.18
REMARK 500 3 CYS A 66 50.07 -91.81
REMARK 500 3 ASP A 72 81.13 57.80
REMARK 500 3 ASN A 87 177.21 174.45
REMARK 500 3 ILE A 103 100.77 68.43
REMARK 500 3 ARG A 104 146.59 -176.12
REMARK 500 3 SER A 110 93.35 -167.95
REMARK 500 4 THR A 9 161.51 -40.73
REMARK 500 4 THR A 21 -157.70 -108.10
REMARK 500 4 ILE A 35 -62.34 -106.32
REMARK 500 4 CYS A 66 49.10 -91.53
REMARK 500 4 ASP A 72 79.11 55.41
REMARK 500 4 ASN A 87 -179.47 -179.20
REMARK 500 4 THR A 96 158.09 -48.29
REMARK 500 4 ILE A 103 101.35 63.20
REMARK 500 4 ARG A 104 147.20 -178.44
REMARK 500 4 SER A 110 -57.81 -170.59
REMARK 500 5 SER A 5 -60.72 -154.25
REMARK 500 5 THR A 9 -173.74 -68.01
REMARK 500 5 ALA A 11 158.76 -48.01
REMARK 500 5 THR A 21 -157.94 -99.53
REMARK 500 5 ALA A 37 -176.16 51.81
REMARK 500 5 ASP A 72 68.30 60.52
REMARK 500 5 ASN A 87 -178.00 176.66
REMARK 500 5 ILE A 103 100.15 67.21
REMARK 500 5 ARG A 104 145.45 -178.70
REMARK 500
REMARK 500 THIS ENTRY HAS 213 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: MMT008001054.1 RELATED DB: TARGETDB
DBREF 1X5Y A 8 105 UNP Q5XKE0 Q5XKE0_MOUSE 731 828
SEQADV 1X5Y GLY A 1 UNP Q5XKE0 CLONING ARTIFACT
SEQADV 1X5Y SER A 2 UNP Q5XKE0 CLONING ARTIFACT
SEQADV 1X5Y SER A 3 UNP Q5XKE0 CLONING ARTIFACT
SEQADV 1X5Y GLY A 4 UNP Q5XKE0 CLONING ARTIFACT
SEQADV 1X5Y SER A 5 UNP Q5XKE0 CLONING ARTIFACT
SEQADV 1X5Y SER A 6 UNP Q5XKE0 CLONING ARTIFACT
SEQADV 1X5Y GLY A 7 UNP Q5XKE0 CLONING ARTIFACT
SEQADV 1X5Y SER A 106 UNP Q5XKE0 CLONING ARTIFACT
SEQADV 1X5Y GLY A 107 UNP Q5XKE0 CLONING ARTIFACT
SEQADV 1X5Y PRO A 108 UNP Q5XKE0 CLONING ARTIFACT
SEQADV 1X5Y SER A 109 UNP Q5XKE0 CLONING ARTIFACT
SEQADV 1X5Y SER A 110 UNP Q5XKE0 CLONING ARTIFACT
SEQADV 1X5Y GLY A 111 UNP Q5XKE0 CLONING ARTIFACT
SEQRES 1 A 111 GLY SER SER GLY SER SER GLY PRO THR SER ALA PRO GLN
SEQRES 2 A 111 HIS LEU THR VAL GLU ASP VAL THR ASP THR THR THR THR
SEQRES 3 A 111 LEU LYS TRP ARG PRO PRO ASP ARG ILE GLY ALA GLY GLY
SEQRES 4 A 111 ILE ASP GLY TYR LEU VAL GLU TYR CYS LEU GLU GLY SER
SEQRES 5 A 111 GLU GLU TRP VAL PRO ALA ASN LYS GLU PRO VAL GLU ARG
SEQRES 6 A 111 CYS GLY PHE THR VAL LYS ASP LEU PRO THR GLY ALA ARG
SEQRES 7 A 111 ILE LEU PHE ARG VAL VAL GLY VAL ASN ILE ALA GLY ARG
SEQRES 8 A 111 SER GLU PRO ALA THR LEU LEU GLN PRO VAL THR ILE ARG
SEQRES 9 A 111 GLU SER GLY PRO SER SER GLY
SHEET 1 A 3 GLN A 13 VAL A 20 0
SHEET 2 A 3 THR A 24 ARG A 30 -1 O ARG A 30 N GLN A 13
SHEET 3 A 3 GLY A 67 LYS A 71 -1 O VAL A 70 N THR A 25
SHEET 1 B 4 VAL A 56 PRO A 57 0
SHEET 2 B 4 GLY A 42 LEU A 49 -1 N TYR A 47 O VAL A 56
SHEET 3 B 4 ILE A 79 ASN A 87 -1 O VAL A 84 N LEU A 44
SHEET 4 B 4 GLY A 90 ARG A 91 -1 O GLY A 90 N ASN A 87
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - r 2 2 Bytes