Header list of 1x52.pdb file
Complete list - r 2 2 Bytes
HEADER PROTEIN BINDING 15-MAY-05 1X52
TITLE SOLUTION STRUCTURES OF THE C-TERMINAL DOMAIN OF THE HUMAN PELOTA
TITLE 2 HOMOLOG (CGI-17)
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: PELOTA HOMOLOG;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: ERF1_3 DOMAIN;
COMPND 5 SYNONYM: CGI-17;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: PELO;
SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040830-12;
SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS ERF1_3 DOMAIN, PELO, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON
KEYWDS 2 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL
KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, PROTEIN BINDING
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR N.NAMEKI,M.SATO,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN
AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 3 02-MAR-22 1X52 1 REMARK SEQADV
REVDAT 2 24-FEB-09 1X52 1 VERSN
REVDAT 1 15-NOV-05 1X52 0
JRNL AUTH N.NAMEKI,M.SATO,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,
JRNL AUTH 2 S.YOKOYAMA
JRNL TITL SOLUTION STRUCTURES OF THE C-TERMINAL DOMAIN OF THE HUMAN
JRNL TITL 2 PELOTA HOMOLOG (CGI-17)
JRNL REF TO BE PUBLISHED
JRNL REFN
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : XWINNMR 3.5, OPALP 1.2
REMARK 3 AUTHORS : BRUKER (XWINNMR), KORADI, R., BILLETER, M.,
REMARK 3 GUNTERT, P. (OPALP)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 1X52 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-MAY-05.
REMARK 100 THE DEPOSITION ID IS D_1000024388.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 296
REMARK 210 PH : 7.0
REMARK 210 IONIC STRENGTH : 120MM
REMARK 210 PRESSURE : AMBIENT
REMARK 210 SAMPLE CONTENTS : 1.3MM ERF1_3 DOMAIN; 20MM D-TRIS
REMARK 210 -HCL; 100MM NACL; 1MM D-DTT;
REMARK 210 0.02% NAN3; 10% D2O
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C
REMARK 210 -SEPARATED_NOESY
REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ
REMARK 210 SPECTROMETER MODEL : AVANCE
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NMRPIPE 20020425, NMRVIEW 5.0.4,
REMARK 210 KUJIRA 0.9295, CYANA 1.0.7
REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS,
REMARK 210 RESTRAINED MOLECULAR DYNAMICS
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 100
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20
REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH
REMARK 210 THE LOWEST ENERGY, STRUCTURES
REMARK 210 WITH THE LEAST RESTRAINT
REMARK 210 VIOLATIONS
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 OD2 ASP A 56 HG1 THR A 57 1.53
REMARK 500 OD2 ASP A 69 HG1 THR A 72 1.57
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 4 ARG A 12 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES
REMARK 500 5 ARG A 78 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES
REMARK 500 5 PHE A 93 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES
REMARK 500 6 ARG A 66 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES
REMARK 500 8 ARG A 114 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES
REMARK 500 9 PHE A 93 CB - CG - CD2 ANGL. DEV. = -4.4 DEGREES
REMARK 500 18 ARG A 114 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 SER A 2 -65.31 -154.16
REMARK 500 1 SER A 5 97.79 63.05
REMARK 500 1 SER A 6 90.68 35.20
REMARK 500 1 ALA A 10 41.11 -77.79
REMARK 500 1 HIS A 34 -85.55 -64.97
REMARK 500 1 MET A 53 14.91 51.96
REMARK 500 1 ALA A 87 19.34 57.26
REMARK 500 1 THR A 107 18.40 56.99
REMARK 500 1 PRO A 121 -73.64 -80.33
REMARK 500 2 ALA A 10 100.10 -169.69
REMARK 500 2 GLN A 105 4.03 -66.00
REMARK 500 3 SER A 3 -170.72 57.51
REMARK 500 3 SER A 5 103.58 67.33
REMARK 500 3 ARG A 12 -66.42 -148.97
REMARK 500 3 LEU A 13 -163.55 44.01
REMARK 500 3 ASP A 15 105.41 63.12
REMARK 500 3 SER A 95 9.83 -62.40
REMARK 500 3 THR A 107 -12.12 77.57
REMARK 500 3 SER A 119 -74.98 -158.90
REMARK 500 3 SER A 123 -164.33 -167.38
REMARK 500 4 SER A 2 141.14 61.68
REMARK 500 4 SER A 6 -164.91 61.12
REMARK 500 4 SER A 14 83.52 47.03
REMARK 500 4 ASP A 15 96.26 74.05
REMARK 500 4 PRO A 118 98.87 -65.12
REMARK 500 4 SER A 123 53.92 -95.63
REMARK 500 5 SER A 5 -97.57 -93.34
REMARK 500 5 VAL A 9 67.99 -114.41
REMARK 500 5 MET A 53 19.96 58.31
REMARK 500 5 THR A 107 -14.93 75.11
REMARK 500 5 SER A 122 -62.96 -135.67
REMARK 500 6 SER A 2 121.16 62.45
REMARK 500 6 SER A 5 113.81 110.65
REMARK 500 6 VAL A 9 21.70 -149.36
REMARK 500 6 SER A 11 -58.53 -132.53
REMARK 500 6 ARG A 12 91.75 49.42
REMARK 500 6 SER A 14 -53.05 -144.64
REMARK 500 6 ASN A 86 44.10 -100.71
REMARK 500 6 ALA A 87 5.04 58.45
REMARK 500 6 PRO A 118 49.06 -77.03
REMARK 500 6 SER A 119 89.30 -152.88
REMARK 500 6 SER A 122 -43.85 -162.30
REMARK 500 6 SER A 123 -64.13 68.08
REMARK 500 7 SER A 2 -20.74 64.55
REMARK 500 7 SER A 5 -67.59 -165.74
REMARK 500 7 ARG A 12 -156.89 -106.08
REMARK 500 7 MET A 53 14.15 55.49
REMARK 500 7 SER A 122 89.89 -153.22
REMARK 500 8 SER A 5 -82.19 -149.07
REMARK 500 8 SER A 14 -58.44 -155.06
REMARK 500
REMARK 500 THIS ENTRY HAS 137 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS
REMARK 500
REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH
REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED
REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND
REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES.
REMARK 500 MODEL OMEGA
REMARK 500 SER A 123 GLY A 124 20 -145.42
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: PLANAR GROUPS
REMARK 500
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS
REMARK 500 AN RMSD GREATER THAN THIS VALUE
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 M RES CSSEQI RMS TYPE
REMARK 500 1 ARG A 38 0.08 SIDE CHAIN
REMARK 500 1 ARG A 66 0.08 SIDE CHAIN
REMARK 500 1 ARG A 75 0.12 SIDE CHAIN
REMARK 500 2 TYR A 29 0.10 SIDE CHAIN
REMARK 500 3 ARG A 12 0.08 SIDE CHAIN
REMARK 500 3 TYR A 29 0.09 SIDE CHAIN
REMARK 500 5 ARG A 78 0.11 SIDE CHAIN
REMARK 500 6 TYR A 29 0.08 SIDE CHAIN
REMARK 500 6 ARG A 66 0.07 SIDE CHAIN
REMARK 500 6 ARG A 75 0.09 SIDE CHAIN
REMARK 500 9 TYR A 41 0.09 SIDE CHAIN
REMARK 500 10 TYR A 29 0.11 SIDE CHAIN
REMARK 500 11 ARG A 38 0.08 SIDE CHAIN
REMARK 500 11 ARG A 73 0.09 SIDE CHAIN
REMARK 500 12 TYR A 29 0.08 SIDE CHAIN
REMARK 500 14 ARG A 114 0.10 SIDE CHAIN
REMARK 500 15 TYR A 29 0.07 SIDE CHAIN
REMARK 500 18 TYR A 29 0.07 SIDE CHAIN
REMARK 500 19 TYR A 29 0.08 SIDE CHAIN
REMARK 500 20 ARG A 66 0.09 SIDE CHAIN
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: HSI002005867.1 RELATED DB: TARGETDB
DBREF 1X52 A 8 118 UNP Q9BRX2 PELO_HUMAN 261 371
SEQADV 1X52 GLY A 1 UNP Q9BRX2 CLONING ARTIFACT
SEQADV 1X52 SER A 2 UNP Q9BRX2 CLONING ARTIFACT
SEQADV 1X52 SER A 3 UNP Q9BRX2 CLONING ARTIFACT
SEQADV 1X52 GLY A 4 UNP Q9BRX2 CLONING ARTIFACT
SEQADV 1X52 SER A 5 UNP Q9BRX2 CLONING ARTIFACT
SEQADV 1X52 SER A 6 UNP Q9BRX2 CLONING ARTIFACT
SEQADV 1X52 GLY A 7 UNP Q9BRX2 CLONING ARTIFACT
SEQADV 1X52 SER A 119 UNP Q9BRX2 CLONING ARTIFACT
SEQADV 1X52 GLY A 120 UNP Q9BRX2 CLONING ARTIFACT
SEQADV 1X52 PRO A 121 UNP Q9BRX2 CLONING ARTIFACT
SEQADV 1X52 SER A 122 UNP Q9BRX2 CLONING ARTIFACT
SEQADV 1X52 SER A 123 UNP Q9BRX2 CLONING ARTIFACT
SEQADV 1X52 GLY A 124 UNP Q9BRX2 CLONING ARTIFACT
SEQRES 1 A 124 GLY SER SER GLY SER SER GLY THR VAL ALA SER ARG LEU
SEQRES 2 A 124 SER ASP THR LYS ALA ALA GLY GLU VAL LYS ALA LEU ASP
SEQRES 3 A 124 ASP PHE TYR LYS MET LEU GLN HIS GLU PRO ASP ARG ALA
SEQRES 4 A 124 PHE TYR GLY LEU LYS GLN VAL GLU LYS ALA ASN GLU ALA
SEQRES 5 A 124 MET ALA ILE ASP THR LEU LEU ILE SER ASP GLU LEU PHE
SEQRES 6 A 124 ARG HIS GLN ASP VAL ALA THR ARG SER ARG TYR VAL ARG
SEQRES 7 A 124 LEU VAL ASP SER VAL LYS GLU ASN ALA GLY THR VAL ARG
SEQRES 8 A 124 ILE PHE SER SER LEU HIS VAL SER GLY GLU GLN LEU SER
SEQRES 9 A 124 GLN LEU THR GLY VAL ALA ALA ILE LEU ARG PHE PRO VAL
SEQRES 10 A 124 PRO SER GLY PRO SER SER GLY
HELIX 1 1 ASP A 15 HIS A 34 1 20
HELIX 2 2 GLU A 35 ASP A 37 5 3
HELIX 3 3 GLY A 42 ALA A 52 1 11
HELIX 4 4 ASP A 62 ARG A 66 1 5
HELIX 5 5 ASP A 69 ASN A 86 1 18
HELIX 6 6 HIS A 97 GLN A 105 1 9
SHEET 1 A 4 ALA A 39 TYR A 41 0
SHEET 2 A 4 VAL A 109 LEU A 113 -1 O ALA A 111 N PHE A 40
SHEET 3 A 4 ILE A 55 SER A 61 -1 N THR A 57 O ILE A 112
SHEET 4 A 4 THR A 89 PHE A 93 1 O PHE A 93 N ILE A 60
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - r 2 2 Bytes