Header list of 1x3d.pdb file
Complete list - r 2 2 Bytes
HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 02-MAY-05 1X3D
TITLE SOLUTION STRUCTURE OF THE FIBRONECTIN TYPE-III DOMAIN OF HUMAN
TITLE 2 FIBRONECTIN TYPE-III DOMAIN CONTAINING PROTEIN 3A
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: FIBRONECTIN TYPE-III DOMAIN CONTAINING PROTEIN 3A;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: FIBRONECTIN TYPE-III DOMAIN;
COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: FNDC3A;
SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040628-01;
SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS FIBRONECTIN TYPE III DOMAIN CONTAINING PROTEIN, STRUCTURAL GENOMICS,
KEYWDS 2 NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL
KEYWDS 3 ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI,
KEYWDS 4 UNKNOWN FUNCTION
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR M.YONEYAMA,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN
AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 4 02-MAR-22 1X3D 1 REMARK SEQADV
REVDAT 3 24-FEB-09 1X3D 1 VERSN
REVDAT 2 17-JAN-06 1X3D 1 JRNL TITLE
REVDAT 1 02-NOV-05 1X3D 0
JRNL AUTH M.YONEYAMA,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA
JRNL TITL SOLUTION STRUCTURE OF THE FIBRONECTIN TYPE-III DOMAIN OF
JRNL TITL 2 HUMAN FIBRONECTIN TYPE-III DOMAIN CONTAINING PROTEIN 3A
JRNL REF TO BE PUBLISHED
JRNL REFN
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : XWINNMR 2.6, CYANA 2.0.17
REMARK 3 AUTHORS : BRUKER (XWINNMR), GUENTERT, P. (CYANA)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 1X3D COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-MAY-05.
REMARK 100 THE DEPOSITION ID IS D_1000024327.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 296
REMARK 210 PH : 7.0
REMARK 210 IONIC STRENGTH : 120
REMARK 210 PRESSURE : AMBIENT
REMARK 210 SAMPLE CONTENTS : 1.16MM FN3 DOMAIN U-15N, 13C;
REMARK 210 20MM D-TRIS-HCL (PH7.0); 100MM
REMARK 210 NACL; 5MM D-DTT; 0.02% NAN3; 10%
REMARK 210 D2O
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C
REMARK 210 -SEPARATED_NOESY
REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ
REMARK 210 SPECTROMETER MODEL : AVANCE
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4,
REMARK 210 KUJIRA 0.9295, CYANA 2.0.17
REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 100
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20
REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES WITH
REMARK 210 THE LEAST RESTRAINT VIOLATIONS
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 ILE A 10 147.83 -34.87
REMARK 500 1 ASN A 28 114.04 -175.25
REMARK 500 1 PRO A 41 -165.50 -69.77
REMARK 500 1 ASP A 56 35.44 -88.76
REMARK 500 1 GLU A 57 30.20 38.67
REMARK 500 1 GLN A 72 153.95 -38.07
REMARK 500 1 TYR A 96 -70.79 -64.55
REMARK 500 1 SER A 102 176.78 -50.33
REMARK 500 1 THR A 109 155.22 -43.13
REMARK 500 1 SER A 110 163.18 -47.20
REMARK 500 1 CYS A 112 151.32 -39.92
REMARK 500 2 SER A 3 137.25 -172.28
REMARK 500 2 THR A 13 176.06 -57.09
REMARK 500 2 GLU A 17 144.78 -39.27
REMARK 500 2 ASN A 28 113.92 -175.58
REMARK 500 2 PRO A 41 -169.86 -69.81
REMARK 500 2 ASP A 56 33.11 -84.31
REMARK 500 2 GLU A 57 37.58 36.30
REMARK 500 2 GLN A 72 157.14 -38.45
REMARK 500 2 SER A 102 176.85 -54.16
REMARK 500 2 THR A 109 167.32 -48.58
REMARK 500 3 SER A 15 106.18 -168.17
REMARK 500 3 GLU A 17 150.60 -34.69
REMARK 500 3 PRO A 18 -176.70 -69.76
REMARK 500 3 ASN A 28 113.87 -175.54
REMARK 500 3 PRO A 41 -168.22 -69.74
REMARK 500 3 GLN A 49 -70.08 -49.92
REMARK 500 3 ASP A 56 36.71 -90.03
REMARK 500 3 GLU A 57 35.92 34.43
REMARK 500 3 GLN A 66 109.57 -58.05
REMARK 500 3 GLN A 72 152.44 -36.30
REMARK 500 3 TYR A 96 -70.06 -78.12
REMARK 500 3 SER A 117 108.55 -52.76
REMARK 500 4 SER A 6 145.55 -170.40
REMARK 500 4 THR A 13 163.68 -47.38
REMARK 500 4 SER A 15 56.58 -115.13
REMARK 500 4 GLU A 17 154.79 -42.35
REMARK 500 4 PRO A 18 -174.40 -69.73
REMARK 500 4 ASN A 28 115.17 -175.28
REMARK 500 4 PRO A 41 -164.12 -69.71
REMARK 500 4 ASP A 56 35.57 -96.56
REMARK 500 4 GLU A 57 28.51 37.34
REMARK 500 4 GLN A 66 108.24 -52.14
REMARK 500 4 TYR A 96 -71.16 -70.93
REMARK 500 4 SER A 102 170.01 -52.60
REMARK 500 4 THR A 109 156.84 -46.74
REMARK 500 4 PRO A 115 -179.75 -69.76
REMARK 500 5 THR A 13 161.19 -44.44
REMARK 500 5 GLU A 17 147.46 -36.67
REMARK 500 5 PRO A 18 -175.85 -69.69
REMARK 500
REMARK 500 THIS ENTRY HAS 229 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: HSK002100947.4 RELATED DB: TARGETDB
DBREF 1X3D A 8 112 UNP Q9Y2H6 FNDC3_HUMAN 297 401
SEQADV 1X3D GLY A 1 UNP Q9Y2H6 CLONING ARTIFACT
SEQADV 1X3D SER A 2 UNP Q9Y2H6 CLONING ARTIFACT
SEQADV 1X3D SER A 3 UNP Q9Y2H6 CLONING ARTIFACT
SEQADV 1X3D GLY A 4 UNP Q9Y2H6 CLONING ARTIFACT
SEQADV 1X3D SER A 5 UNP Q9Y2H6 CLONING ARTIFACT
SEQADV 1X3D SER A 6 UNP Q9Y2H6 CLONING ARTIFACT
SEQADV 1X3D GLY A 7 UNP Q9Y2H6 CLONING ARTIFACT
SEQADV 1X3D SER A 113 UNP Q9Y2H6 CLONING ARTIFACT
SEQADV 1X3D GLY A 114 UNP Q9Y2H6 CLONING ARTIFACT
SEQADV 1X3D PRO A 115 UNP Q9Y2H6 CLONING ARTIFACT
SEQADV 1X3D SER A 116 UNP Q9Y2H6 CLONING ARTIFACT
SEQADV 1X3D SER A 117 UNP Q9Y2H6 CLONING ARTIFACT
SEQADV 1X3D GLY A 118 UNP Q9Y2H6 CLONING ARTIFACT
SEQRES 1 A 118 GLY SER SER GLY SER SER GLY ALA GLU ILE PHE THR THR
SEQRES 2 A 118 LEU SER CYS GLU PRO ASP ILE PRO ASN PRO PRO ARG ILE
SEQRES 3 A 118 ALA ASN ARG THR LYS ASN SER LEU THR LEU GLN TRP LYS
SEQRES 4 A 118 ALA PRO SER ASP ASN GLY SER LYS ILE GLN ASN PHE VAL
SEQRES 5 A 118 LEU GLU TRP ASP GLU GLY LYS GLY ASN GLY GLU PHE CYS
SEQRES 6 A 118 GLN CYS TYR MET GLY SER GLN LYS GLN PHE LYS ILE THR
SEQRES 7 A 118 LYS LEU SER PRO ALA MET GLY CYS LYS PHE ARG LEU SER
SEQRES 8 A 118 ALA ARG ASN ASP TYR GLY THR SER GLY PHE SER GLU GLU
SEQRES 9 A 118 VAL LEU TYR TYR THR SER GLY CYS SER GLY PRO SER SER
SEQRES 10 A 118 GLY
SHEET 1 A 3 ARG A 25 THR A 30 0
SHEET 2 A 3 SER A 33 GLN A 37 -1 O THR A 35 N ASN A 28
SHEET 3 A 3 GLN A 74 THR A 78 -1 O ILE A 77 N LEU A 34
SHEET 1 B 3 CYS A 65 GLY A 70 0
SHEET 2 B 3 ILE A 48 TRP A 55 -1 N PHE A 51 O GLY A 70
SHEET 3 B 3 ALA A 92 ASN A 94 -1 O ARG A 93 N ASN A 50
SHEET 1 C 4 CYS A 65 GLY A 70 0
SHEET 2 C 4 ILE A 48 TRP A 55 -1 N PHE A 51 O GLY A 70
SHEET 3 C 4 GLY A 85 ARG A 89 -1 O ARG A 89 N GLU A 54
SHEET 4 C 4 VAL A 105 TYR A 108 -1 O TYR A 107 N CYS A 86
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - r 2 2 Bytes