Header list of 1wy8.pdb file
Complete list - r 2 2 Bytes
HEADER LIGASE 09-FEB-05 1WY8
TITLE SOLUTION STRUCTURE OF THE N-TERMINAL UBIQUITIN-LIKE DOMAIN IN HUMAN
TITLE 2 NP95/ICBP90-LIKE RING FINGER PROTEIN (NIRF)
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: NP95-LIKE RING FINGER PROTEIN, ISOFORM A;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: UBIQUITIN-LIKE DOMAIN;
COMPND 5 SYNONYM: NP95/ICBP90-LIKE RING FINGER PROTEIN, NIRF;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: UHRF2;
SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P041101-10;
SOURCE 8 OTHER_DETAILS: CELL-FREE SYNTHESIS
KEYWDS UBIQUITIN-LIKE DOMAIN, NP95/ICBP90-LIKE RING FINGER (NIRF), UBIQUITIN
KEYWDS 2 LIGASE, STRUCTURAL GENOMICS, NPPSFA, RIKEN STRUCTURAL
KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, LIGASE
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR C.ZHAO,K.SAITO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN STRUCTURAL
AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 3 02-MAR-22 1WY8 1 REMARK SEQADV
REVDAT 2 24-FEB-09 1WY8 1 VERSN
REVDAT 1 09-AUG-05 1WY8 0
JRNL AUTH C.ZHAO,K.SAITO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA
JRNL TITL SOLUTION STRUCTURE OF THE N-TERMINAL UBIQUITIN-LIKE DOMAIN
JRNL TITL 2 IN HUMAN NP95/ICBP90-LIKE RING FINGER PROTEIN (NIRF)
JRNL REF TO BE PUBLISHED
JRNL REFN
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : XWINNMR 2.6, CYANA 2.0.17
REMARK 3 AUTHORS : BRUKER (XWINNMR), GUENTERT, P. (CYANA)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 1WY8 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-FEB-05.
REMARK 100 THE DEPOSITION ID IS D_1000024144.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 298.0
REMARK 210 PH : 7.0
REMARK 210 IONIC STRENGTH : 100MM
REMARK 210 PRESSURE : AMBIENT
REMARK 210 SAMPLE CONTENTS : 1.91MM PROTEIN U-15N, 13C/20MM D
REMARK 210 -TRIS-HCL, 100MM NACL, 1MM D-DTT,
REMARK 210 0.02% NAN3, 10% D2O
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C
REMARK 210 -SEPARATED_NOESY
REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ
REMARK 210 SPECTROMETER MODEL : AVANCE
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NMRPIPE 20020425, NMRVIEW 5.0.4,
REMARK 210 KUJIRA 0.921, CYANA 2.0.17
REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 100
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20
REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH
REMARK 210 THE LEAST RESTRAINT VIOLATIONS
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 ARG A 46 154.63 -42.76
REMARK 500 1 GLN A 58 96.32 -48.44
REMARK 500 1 PRO A 82 -179.45 -69.78
REMARK 500 1 PRO A 86 1.14 -69.74
REMARK 500 1 SER A 87 115.15 -36.91
REMARK 500 2 ILE A 15 -32.56 -35.19
REMARK 500 2 ARG A 46 154.70 -40.32
REMARK 500 2 GLN A 58 96.42 -50.58
REMARK 500 2 ASN A 73 43.43 71.03
REMARK 500 2 SER A 84 138.32 -171.19
REMARK 500 2 SER A 88 118.93 -37.08
REMARK 500 3 ARG A 46 156.05 -39.93
REMARK 500 3 GLN A 58 95.99 -50.16
REMARK 500 3 SER A 84 41.97 -93.97
REMARK 500 4 SER A 5 -55.41 -122.45
REMARK 500 4 ILE A 15 -34.14 -35.96
REMARK 500 4 ARG A 46 154.06 -45.13
REMARK 500 4 GLN A 58 96.90 -44.71
REMARK 500 5 ILE A 15 -34.89 -34.25
REMARK 500 5 GLN A 58 96.53 -52.08
REMARK 500 5 PRO A 82 92.72 -69.74
REMARK 500 5 PRO A 86 -179.47 -69.72
REMARK 500 6 ILE A 15 -39.50 -39.77
REMARK 500 6 ASP A 25 44.39 74.79
REMARK 500 6 ARG A 46 154.66 -42.42
REMARK 500 6 GLN A 58 96.25 -48.43
REMARK 500 6 PRO A 82 97.59 -69.81
REMARK 500 6 SER A 84 124.66 -172.54
REMARK 500 7 ILE A 15 -37.72 -34.74
REMARK 500 7 ASP A 25 44.43 74.12
REMARK 500 7 ARG A 46 153.82 -47.73
REMARK 500 7 ARG A 55 48.36 39.87
REMARK 500 7 GLN A 58 96.28 -51.15
REMARK 500 8 ARG A 46 151.92 -44.35
REMARK 500 8 ARG A 55 50.64 38.81
REMARK 500 8 GLN A 58 96.99 -50.79
REMARK 500 9 SER A 5 48.54 -85.81
REMARK 500 9 SER A 18 -43.75 -133.85
REMARK 500 9 ASP A 25 46.51 70.87
REMARK 500 9 ARG A 46 154.93 -46.40
REMARK 500 9 GLN A 58 96.53 -49.24
REMARK 500 9 ASN A 73 45.25 71.22
REMARK 500 9 SER A 87 166.16 -43.79
REMARK 500 10 SER A 2 134.65 -174.52
REMARK 500 10 SER A 5 -47.09 -133.46
REMARK 500 10 ILE A 15 -33.66 -34.26
REMARK 500 10 ASP A 25 45.99 74.91
REMARK 500 10 ARG A 46 156.11 -43.97
REMARK 500 10 GLN A 58 96.70 -50.77
REMARK 500 10 ASP A 83 156.25 -43.46
REMARK 500
REMARK 500 THIS ENTRY HAS 93 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 650
REMARK 650 HELIX
REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: HSI002011909.1 RELATED DB: TARGETDB
DBREF 1WY8 A 8 83 UNP Q96PU4 UHRF2_HUMAN 1 76
SEQADV 1WY8 GLY A 1 UNP Q96PU4 CLONING ARTIFACT
SEQADV 1WY8 SER A 2 UNP Q96PU4 CLONING ARTIFACT
SEQADV 1WY8 SER A 3 UNP Q96PU4 CLONING ARTIFACT
SEQADV 1WY8 GLY A 4 UNP Q96PU4 CLONING ARTIFACT
SEQADV 1WY8 SER A 5 UNP Q96PU4 CLONING ARTIFACT
SEQADV 1WY8 SER A 6 UNP Q96PU4 CLONING ARTIFACT
SEQADV 1WY8 GLY A 7 UNP Q96PU4 CLONING ARTIFACT
SEQADV 1WY8 SER A 84 UNP Q96PU4 CLONING ARTIFACT
SEQADV 1WY8 GLY A 85 UNP Q96PU4 CLONING ARTIFACT
SEQADV 1WY8 PRO A 86 UNP Q96PU4 CLONING ARTIFACT
SEQADV 1WY8 SER A 87 UNP Q96PU4 CLONING ARTIFACT
SEQADV 1WY8 SER A 88 UNP Q96PU4 CLONING ARTIFACT
SEQADV 1WY8 GLY A 89 UNP Q96PU4 CLONING ARTIFACT
SEQRES 1 A 89 GLY SER SER GLY SER SER GLY MET TRP ILE GLN VAL ARG
SEQRES 2 A 89 THR ILE ASP GLY SER LYS THR CYS THR ILE GLU ASP VAL
SEQRES 3 A 89 SER ARG LYS ALA THR ILE GLU GLU LEU ARG GLU ARG VAL
SEQRES 4 A 89 TRP ALA LEU PHE ASP VAL ARG PRO GLU CYS GLN ARG LEU
SEQRES 5 A 89 PHE TYR ARG GLY LYS GLN LEU GLU ASN GLY TYR THR LEU
SEQRES 6 A 89 PHE ASP TYR ASP VAL GLY LEU ASN ASP ILE ILE GLN LEU
SEQRES 7 A 89 LEU VAL ARG PRO ASP SER GLY PRO SER SER GLY
HELIX 1 1 ILE A 32 LEU A 42 1 11
HELIX 2 2 LEU A 65 TYR A 68 1 4
SHEET 1 A 5 THR A 20 VAL A 26 0
SHEET 2 A 5 MET A 8 THR A 14 -1 N MET A 8 O VAL A 26
SHEET 3 A 5 ILE A 75 VAL A 80 1 O LEU A 78 N ARG A 13
SHEET 4 A 5 GLN A 50 TYR A 54 -1 N PHE A 53 O GLN A 77
SHEET 5 A 5 LYS A 57 GLN A 58 -1 O LYS A 57 N TYR A 54
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - r 2 2 Bytes