Header list of 1wih.pdb file
Complete list - r 2 2 Bytes
HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 28-MAY-04 1WIH
TITLE SOLUTION STRUCTURE OF RSGI RUH-021, A DOMAIN II OF RIBOSOME RECYCLING
TITLE 2 FACTOR FROM MOUSE CDNA
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: MITOCHONDRIAL RIBOSOME RECYCLING FACTOR;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: DOMAIN II;
COMPND 5 SYNONYM: RIKEN CDNA 2400002D02;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS;
SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE;
SOURCE 4 ORGANISM_TAXID: 10090;
SOURCE 5 TISSUE: TONGUE;
SOURCE 6 GENE: RIKEN CDNA 2310061P21;
SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P030908-28;
SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS SYSTEM
KEYWDS RIBOSOME RECYCLING FACTOR, STRUCTURAL GENOMICS, RIKEN STRUCTURAL
KEYWDS 2 GENOMICS/PROTEOMICS INITIATIVE, RSGI, UNKNOWN FUNCTION
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR T.ABE,H.HIROTA,S.KOSHIBA,T.KIGAWA,S.YOKOYAMA,RIKEN STRUCTURAL
AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 3 02-MAR-22 1WIH 1 REMARK SEQADV
REVDAT 2 24-FEB-09 1WIH 1 VERSN
REVDAT 1 28-NOV-04 1WIH 0
JRNL AUTH T.ABE,H.HIROTA,S.KOSHIBA,T.KIGAWA,S.YOKOYAMA
JRNL TITL SOLUTION STRUCTURE OF RSGI RUH-021, A DOMAIN II OF RIBOSOME
JRNL TITL 2 RECYCLING FACTOR FROM MOUSE CDNA
JRNL REF TO BE PUBLISHED
JRNL REFN
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 1.0.18
REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 1WIH COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-JUN-04.
REMARK 100 THE DEPOSITION ID IS D_1000023616.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 298
REMARK 210 PH : 7.5
REMARK 210 IONIC STRENGTH : 100MM
REMARK 210 PRESSURE : AMBIENT
REMARK 210 SAMPLE CONTENTS : 0.50MM RSGI RUH-021 U-15N, 13C;
REMARK 210 20MM D-TRIS-HCL BUFFER; 100MM
REMARK 210 NACL; 2MM D-DTT; 0.02% NAN3; 10%
REMARK 210 D20
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C
REMARK 210 -SEPARATED_NOESY
REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ
REMARK 210 SPECTROMETER MODEL : AVANCE
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4,
REMARK 210 KUJIRA 0.896
REMARK 210 METHOD USED : SIMULATED ANNEALING, TORSION
REMARK 210 ANGLE DYNAMICS
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 100
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20
REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST
REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES
REMARK 210 WITH THE LOWEST ENERGY, TARGET
REMARK 210 FUNCTION
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR
REMARK 210 SPECTROSCOPY.
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 H GLU A 64 O ARG A 71 1.49
REMARK 500 H MET A 40 O THR A 68 1.50
REMARK 500 O LYS A 52 H GLU A 56 1.58
REMARK 500 H VAL A 13 O VAL A 20 1.59
REMARK 500 O GLN A 34 H ILE A 74 1.60
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 SER A 5 -57.38 -141.58
REMARK 500 1 LEU A 8 -49.63 -138.37
REMARK 500 1 ALA A 16 -78.00 -39.58
REMARK 500 1 ASN A 23 34.16 -95.25
REMARK 500 1 GLN A 24 -54.73 -131.83
REMARK 500 1 LYS A 31 -71.30 -94.32
REMARK 500 1 GLN A 34 40.37 -159.24
REMARK 500 1 PHE A 43 68.69 -152.00
REMARK 500 1 THR A 68 16.09 -143.59
REMARK 500 1 THR A 78 111.33 61.73
REMARK 500 1 SER A 83 100.80 -178.60
REMARK 500 2 SER A 5 -66.09 -106.03
REMARK 500 2 LEU A 8 -50.34 -125.48
REMARK 500 2 ASP A 17 -36.76 177.60
REMARK 500 2 ASN A 23 33.10 -92.63
REMARK 500 2 GLN A 24 -55.44 -129.37
REMARK 500 3 LEU A 8 -52.63 -124.75
REMARK 500 3 ASP A 17 -33.32 169.70
REMARK 500 3 GLN A 24 -54.28 -120.03
REMARK 500 3 PHE A 43 65.97 -150.81
REMARK 500 3 MET A 59 107.02 -160.70
REMARK 500 3 ASN A 60 69.26 -68.37
REMARK 500 3 LYS A 76 138.70 66.04
REMARK 500 3 VAL A 77 -57.94 -122.30
REMARK 500 3 THR A 78 -70.08 -74.21
REMARK 500 3 SER A 83 133.62 66.11
REMARK 500 4 SER A 6 -56.10 -137.33
REMARK 500 4 LEU A 8 -53.07 -128.79
REMARK 500 4 ILE A 11 150.93 -43.47
REMARK 500 4 GLN A 24 -55.08 -121.58
REMARK 500 4 MET A 40 54.09 -108.79
REMARK 500 4 PHE A 43 65.09 -160.92
REMARK 500 4 ILE A 51 -37.38 -38.67
REMARK 500 4 MET A 59 -48.75 -136.07
REMARK 500 4 SER A 79 97.96 51.57
REMARK 500 4 SER A 83 136.92 63.46
REMARK 500 5 LEU A 8 -49.00 -130.17
REMARK 500 5 GLN A 24 -54.37 -126.56
REMARK 500 5 MET A 30 86.00 -66.85
REMARK 500 5 GLN A 34 29.16 -147.59
REMARK 500 5 PHE A 43 64.68 -158.89
REMARK 500 5 MET A 59 -47.80 -137.06
REMARK 500 5 LYS A 76 78.71 -173.28
REMARK 500 5 THR A 78 89.49 47.21
REMARK 500 5 SER A 83 99.34 58.83
REMARK 500 6 SER A 5 128.09 65.07
REMARK 500 6 GLN A 24 -55.53 -122.58
REMARK 500 6 MET A 30 86.23 -69.13
REMARK 500 6 PHE A 43 63.30 -155.49
REMARK 500 6 VAL A 77 -169.98 45.28
REMARK 500
REMARK 500 THIS ENTRY HAS 184 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: MMT007020407.1 RELATED DB: TARGETDB
DBREF 1WIH A 8 78 UNP Q9D6S7 RRFM_MOUSE 116 186
SEQADV 1WIH GLY A 1 UNP Q9D6S7 CLONING ARTIFACT
SEQADV 1WIH SER A 2 UNP Q9D6S7 CLONING ARTIFACT
SEQADV 1WIH SER A 3 UNP Q9D6S7 CLONING ARTIFACT
SEQADV 1WIH GLY A 4 UNP Q9D6S7 CLONING ARTIFACT
SEQADV 1WIH SER A 5 UNP Q9D6S7 CLONING ARTIFACT
SEQADV 1WIH SER A 6 UNP Q9D6S7 CLONING ARTIFACT
SEQADV 1WIH GLY A 7 UNP Q9D6S7 CLONING ARTIFACT
SEQADV 1WIH SER A 79 UNP Q9D6S7 CLONING ARTIFACT
SEQADV 1WIH GLY A 80 UNP Q9D6S7 CLONING ARTIFACT
SEQADV 1WIH PRO A 81 UNP Q9D6S7 CLONING ARTIFACT
SEQADV 1WIH SER A 82 UNP Q9D6S7 CLONING ARTIFACT
SEQADV 1WIH SER A 83 UNP Q9D6S7 CLONING ARTIFACT
SEQADV 1WIH GLY A 84 UNP Q9D6S7 CLONING ARTIFACT
SEQRES 1 A 84 GLY SER SER GLY SER SER GLY LEU ASP HIS ILE THR VAL
SEQRES 2 A 84 VAL THR ALA ASP GLY LYS VAL ALA LEU ASN GLN ILE GLY
SEQRES 3 A 84 GLN ILE SER MET LYS SER PRO GLN VAL ILE LEU VAL ASN
SEQRES 4 A 84 MET ALA SER PHE PRO GLU CYS THR ALA ALA ALA ILE LYS
SEQRES 5 A 84 ALA ILE ARG GLU SER GLY MET ASN LEU ASN PRO GLU VAL
SEQRES 6 A 84 GLU GLY THR LEU ILE ARG VAL PRO ILE PRO LYS VAL THR
SEQRES 7 A 84 SER GLY PRO SER SER GLY
HELIX 1 1 LEU A 22 GLY A 26 1 5
HELIX 2 2 CYS A 46 GLU A 56 1 11
SHEET 1 A 2 THR A 12 THR A 15 0
SHEET 2 A 2 GLY A 18 ALA A 21 -1 O VAL A 20 N VAL A 13
SHEET 1 B 4 GLN A 27 SER A 32 0
SHEET 2 B 4 VAL A 35 ASN A 39 -1 O LEU A 37 N SER A 29
SHEET 3 B 4 LEU A 69 PRO A 73 -1 O VAL A 72 N ILE A 36
SHEET 4 B 4 GLU A 64 GLU A 66 -1 N GLU A 64 O ARG A 71
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - r 2 2 Bytes