Header list of 1wgo.pdb file
Complete list - r 2 2 Bytes
HEADER MEMBRANE PROTEIN 28-MAY-04 1WGO TITLE SOLUTION STRUCTURE OF THE PKD DOMAIN FROM HUMAN VPS10 DOMAIN- TITLE 2 CONTAINING RECEPTOR SORCS2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: VPS10 DOMAIN-CONTAINING RECEPTOR SORCS2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PKD DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KAZUSA CDNA FH14788; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040119-67; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS POLYCYSTIC KIDNEY DISEASE, PKD, STRUCTURAL GENOMICS, KIAA1329 KEYWDS 2 PROTEIN, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, KEYWDS 3 MEMBRANE PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR E.CHIKAYAMA,T.KIGAWA,N.TOCHIO,S.KOSHIBA,M.INOUE,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 02-MAR-22 1WGO 1 REMARK SEQADV REVDAT 2 24-FEB-09 1WGO 1 VERSN REVDAT 1 28-NOV-04 1WGO 0 JRNL AUTH E.CHIKAYAMA,T.KIGAWA,N.TOCHIO,S.KOSHIBA,M.INOUE,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE PKD DOMAIN FROM HUMAN VPS10 JRNL TITL 2 DOMAIN-CONTAINING RECEPTOR SORCS2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUENTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WGO COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-JUN-04. REMARK 100 THE DEPOSITION ID IS D_1000023559. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.12MM PKD DOMAIN U-15N, 13C; REMARK 210 20MM D-TRIS-HCL(PH 7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.901, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 CYS A 8 136.81 -171.28 REMARK 500 1 ASP A 13 158.15 -45.76 REMARK 500 1 MET A 14 85.67 -65.81 REMARK 500 1 GLN A 18 60.46 -100.96 REMARK 500 1 LEU A 21 127.68 -174.16 REMARK 500 1 VAL A 40 -66.82 -95.00 REMARK 500 1 VAL A 59 156.77 -47.24 REMARK 500 1 THR A 61 105.83 -39.53 REMARK 500 1 ASP A 70 40.01 -91.25 REMARK 500 1 GLU A 91 -60.58 -102.35 REMARK 500 1 ALA A 106 -74.86 -94.04 REMARK 500 1 PRO A 120 2.73 -69.71 REMARK 500 1 SER A 122 159.30 -42.82 REMARK 500 2 GLN A 15 93.86 -69.33 REMARK 500 2 LEU A 21 137.07 -36.87 REMARK 500 2 PRO A 24 87.94 -69.76 REMARK 500 2 GLN A 36 103.62 -38.81 REMARK 500 2 GLU A 38 107.82 -59.41 REMARK 500 2 LEU A 60 -179.62 -52.03 REMARK 500 2 HIS A 88 118.02 -165.04 REMARK 500 2 ALA A 106 -72.26 -62.76 REMARK 500 2 PRO A 120 81.74 -69.81 REMARK 500 3 GLN A 36 93.24 -39.10 REMARK 500 3 GLU A 38 109.11 -59.93 REMARK 500 3 VAL A 59 35.50 32.55 REMARK 500 3 THR A 61 102.47 -55.83 REMARK 500 3 ALA A 106 -71.95 -63.76 REMARK 500 4 GLN A 15 42.15 35.73 REMARK 500 4 PRO A 24 92.22 -69.77 REMARK 500 4 PRO A 28 95.07 -69.73 REMARK 500 4 GLN A 36 96.86 -35.03 REMARK 500 4 ASP A 47 87.45 -57.87 REMARK 500 4 LEU A 60 144.59 -36.94 REMARK 500 4 ASN A 78 37.79 34.60 REMARK 500 4 ALA A 106 -73.98 -61.33 REMARK 500 5 MET A 14 141.68 -174.54 REMARK 500 5 GLN A 20 152.56 -47.76 REMARK 500 5 PRO A 24 -173.48 -69.79 REMARK 500 5 GLN A 36 100.17 -34.22 REMARK 500 5 GLU A 38 107.92 -56.50 REMARK 500 5 PRO A 44 86.00 -69.81 REMARK 500 5 VAL A 59 25.02 39.97 REMARK 500 5 ASP A 70 -74.77 -45.90 REMARK 500 5 PRO A 120 93.71 -69.76 REMARK 500 5 SER A 122 -53.99 -127.52 REMARK 500 6 SER A 6 166.90 -45.10 REMARK 500 6 GLN A 15 -46.46 -132.47 REMARK 500 6 GLN A 16 43.43 34.81 REMARK 500 6 GLN A 18 42.18 -95.34 REMARK 500 6 PRO A 24 -172.45 -69.70 REMARK 500 REMARK 500 THIS ENTRY HAS 190 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002001303.1 RELATED DB: TARGETDB DBREF 1WGO A 8 117 UNP Q96PQ0 SORC2_HUMAN 760 869 SEQADV 1WGO GLY A 1 UNP Q96PQ0 CLONING ARTIFACT SEQADV 1WGO SER A 2 UNP Q96PQ0 CLONING ARTIFACT SEQADV 1WGO SER A 3 UNP Q96PQ0 CLONING ARTIFACT SEQADV 1WGO GLY A 4 UNP Q96PQ0 CLONING ARTIFACT SEQADV 1WGO SER A 5 UNP Q96PQ0 CLONING ARTIFACT SEQADV 1WGO SER A 6 UNP Q96PQ0 CLONING ARTIFACT SEQADV 1WGO GLY A 7 UNP Q96PQ0 CLONING ARTIFACT SEQADV 1WGO SER A 118 UNP Q96PQ0 CLONING ARTIFACT SEQADV 1WGO GLY A 119 UNP Q96PQ0 CLONING ARTIFACT SEQADV 1WGO PRO A 120 UNP Q96PQ0 CLONING ARTIFACT SEQADV 1WGO SER A 121 UNP Q96PQ0 CLONING ARTIFACT SEQADV 1WGO SER A 122 UNP Q96PQ0 CLONING ARTIFACT SEQADV 1WGO GLY A 123 UNP Q96PQ0 CLONING ARTIFACT SEQRES 1 A 123 GLY SER SER GLY SER SER GLY CYS GLU GLY GLY VAL ASP SEQRES 2 A 123 MET GLN GLN SER GLN VAL GLN LEU GLN CYS PRO LEU THR SEQRES 3 A 123 PRO PRO ARG GLY LEU GLN VAL SER ILE GLN GLY GLU ALA SEQRES 4 A 123 VAL ALA VAL ARG PRO GLY GLU ASP VAL LEU PHE VAL VAL SEQRES 5 A 123 ARG GLN GLU GLN GLY ASP VAL LEU THR THR LYS TYR GLN SEQRES 6 A 123 VAL ASP LEU GLY ASP GLY PHE LYS ALA MET TYR VAL ASN SEQRES 7 A 123 LEU THR LEU THR GLY GLU PRO ILE ARG HIS ARG TYR GLU SEQRES 8 A 123 SER PRO GLY ILE TYR ARG VAL SER VAL ARG ALA GLU ASN SEQRES 9 A 123 THR ALA GLY HIS ASP GLU ALA VAL LEU PHE VAL GLN VAL SEQRES 10 A 123 SER GLY PRO SER SER GLY HELIX 1 1 ASN A 78 GLY A 83 1 6 SHEET 1 A 3 LEU A 31 ILE A 35 0 SHEET 2 A 3 VAL A 48 GLN A 54 -1 O VAL A 51 N SER A 34 SHEET 3 A 3 ILE A 86 HIS A 88 -1 O HIS A 88 N VAL A 48 SHEET 1 B 4 LYS A 73 VAL A 77 0 SHEET 2 B 4 LYS A 63 ASP A 67 -1 N TYR A 64 O TYR A 76 SHEET 3 B 4 TYR A 96 GLU A 103 -1 O SER A 99 N ASP A 67 SHEET 4 B 4 HIS A 108 VAL A 115 -1 O ASP A 109 N ALA A 102 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1
Complete list - r 2 2 Bytes