Header list of 1wfd.pdb file
Complete list - r 2 2 Bytes
HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 26-MAY-04 1WFD
TITLE SOLUTION STRUCTURE OF MOUSE MIT DOMAIN
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN 1500032H18;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: MIT DOMAIN;
COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS;
SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE;
SOURCE 4 ORGANISM_TAXID: 10090;
SOURCE 5 GENE: RIKEN CDNA 1500032H18;
SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P031117-13;
SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS
KEYWDS MIT DOMAIN, STRUCTURAL GENOMICS, RIKEN STRUCTURAL GENOMICS/PROTEOMICS
KEYWDS 2 INITIATIVE, RSGI, UNKNOWN FUNCTION
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR T.SUETAKE,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS
AUTHOR 2 INITIATIVE (RSGI)
REVDAT 3 02-MAR-22 1WFD 1 REMARK SEQADV
REVDAT 2 24-FEB-09 1WFD 1 VERSN
REVDAT 1 26-NOV-04 1WFD 0
JRNL AUTH T.SUETAKE,F.HAYASHI,S.YOKOYAMA
JRNL TITL SOLUTION STRUCTURE OF MOUSE MIT DOMAIN
JRNL REF TO BE PUBLISHED
JRNL REFN
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : VNMR 6.1C, CYANA 1.0.7
REMARK 3 AUTHORS : VARIAN (VNMR), GUENTERT, P. (CYANA)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 1WFD COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-MAY-04.
REMARK 100 THE DEPOSITION ID IS D_1000023516.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 298
REMARK 210 PH : 6.0
REMARK 210 IONIC STRENGTH : 100MM NACL
REMARK 210 PRESSURE : AMBIENT
REMARK 210 SAMPLE CONTENTS : 0.98MM 13C, 15N-LABELED PROTEIN;
REMARK 210 20MM PHOSPHATE BUFFER; 100MM
REMARK 210 NACL; 1MM D10-DTT; 0.02% NAN3
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N
REMARK 210 -SEPARATED_NOESY
REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ
REMARK 210 SPECTROMETER MODEL : INOVA
REMARK 210 SPECTROMETER MANUFACTURER : VARIAN
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NMRPIPE 2002045, NMRVIEW 5.0.4,
REMARK 210 KUJIRA 0.860, CYANA 1.0.7
REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 100
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20
REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST
REMARK 210 RESTRAINT VIOLATIONS, TARGET
REMARK 210 FUNCTION
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O LYS A 57 H LEU A 61 1.52
REMARK 500 O GLY A 41 H LEU A 45 1.53
REMARK 500 O VAL A 36 H GLU A 40 1.55
REMARK 500 O GLU A 73 H LYS A 77 1.57
REMARK 500 O ALA A 15 H LEU A 19 1.57
REMARK 500 O LEU A 45 H LEU A 49 1.60
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 SER A 3 104.67 -57.58
REMARK 500 1 SER A 6 -58.22 -139.71
REMARK 500 1 GLN A 8 96.96 61.03
REMARK 500 1 SER A 10 -168.34 -176.53
REMARK 500 1 LYS A 87 49.97 39.32
REMARK 500 1 SER A 91 111.93 -172.00
REMARK 500 1 SER A 92 166.29 63.22
REMARK 500 2 SER A 2 -58.47 -178.74
REMARK 500 2 SER A 3 -57.87 -130.45
REMARK 500 2 SER A 6 148.83 62.68
REMARK 500 2 ASP A 9 46.06 -162.64
REMARK 500 2 ASP A 11 -66.11 -100.01
REMARK 500 2 THR A 52 107.34 -45.22
REMARK 500 2 GLU A 54 108.58 -52.34
REMARK 500 2 LYS A 87 57.36 39.71
REMARK 500 2 SER A 92 78.80 47.18
REMARK 500 3 SER A 3 -58.14 -164.79
REMARK 500 3 SER A 5 77.91 40.56
REMARK 500 3 ASP A 9 55.38 -163.94
REMARK 500 3 LYS A 53 -58.14 74.36
REMARK 500 3 GLU A 54 94.60 -44.80
REMARK 500 3 LYS A 87 73.66 39.79
REMARK 500 3 SER A 88 88.75 -167.20
REMARK 500 4 SER A 6 85.16 59.68
REMARK 500 4 ASP A 9 48.10 -167.89
REMARK 500 4 ASP A 11 -66.74 -97.32
REMARK 500 4 GLU A 54 95.36 -52.08
REMARK 500 4 SER A 88 177.51 64.61
REMARK 500 4 SER A 91 89.03 57.28
REMARK 500 4 SER A 92 -57.17 -159.43
REMARK 500 5 SER A 3 123.17 -171.34
REMARK 500 5 SER A 5 121.46 66.51
REMARK 500 5 ASP A 11 -80.53 -104.68
REMARK 500 5 LYS A 53 -60.88 68.94
REMARK 500 5 GLU A 54 98.51 -43.93
REMARK 500 5 LYS A 87 -98.50 39.85
REMARK 500 5 SER A 88 89.65 51.20
REMARK 500 6 GLN A 8 107.12 -55.31
REMARK 500 6 SER A 10 -177.06 -178.23
REMARK 500 6 GLU A 54 98.47 -39.73
REMARK 500 6 ASP A 85 42.77 -88.21
REMARK 500 6 SER A 88 -53.23 -150.05
REMARK 500 7 SER A 6 149.88 -175.30
REMARK 500 7 GLN A 8 52.65 38.20
REMARK 500 7 ASP A 9 -38.47 177.22
REMARK 500 7 ASP A 11 -63.17 -96.92
REMARK 500 7 THR A 52 106.09 -47.60
REMARK 500 7 GLU A 84 -72.12 -54.39
REMARK 500 8 SER A 3 95.99 -166.72
REMARK 500 8 SER A 6 -59.57 -121.25
REMARK 500
REMARK 500 THIS ENTRY HAS 156 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: MMT007001731.1 RELATED DB: TARGETDB
DBREF 1WFD A 8 87 UNP Q8VDV8 Q8VDV8_MOUSE 8 87
SEQADV 1WFD GLY A 1 UNP Q8VDV8 CLONING ARTIFACT
SEQADV 1WFD SER A 2 UNP Q8VDV8 CLONING ARTIFACT
SEQADV 1WFD SER A 3 UNP Q8VDV8 CLONING ARTIFACT
SEQADV 1WFD GLY A 4 UNP Q8VDV8 CLONING ARTIFACT
SEQADV 1WFD SER A 5 UNP Q8VDV8 CLONING ARTIFACT
SEQADV 1WFD SER A 6 UNP Q8VDV8 CLONING ARTIFACT
SEQADV 1WFD GLY A 7 UNP Q8VDV8 CLONING ARTIFACT
SEQADV 1WFD SER A 88 UNP Q8VDV8 CLONING ARTIFACT
SEQADV 1WFD GLY A 89 UNP Q8VDV8 CLONING ARTIFACT
SEQADV 1WFD PRO A 90 UNP Q8VDV8 CLONING ARTIFACT
SEQADV 1WFD SER A 91 UNP Q8VDV8 CLONING ARTIFACT
SEQADV 1WFD SER A 92 UNP Q8VDV8 CLONING ARTIFACT
SEQADV 1WFD GLY A 93 UNP Q8VDV8 CLONING ARTIFACT
SEQRES 1 A 93 GLY SER SER GLY SER SER GLY GLN ASP SER ASP SER THR
SEQRES 2 A 93 ALA ALA VAL ALA VAL LEU LYS ARG ALA VAL GLU LEU ASP
SEQRES 3 A 93 ALA GLU SER ARG TYR GLN GLN ALA LEU VAL CYS TYR GLN
SEQRES 4 A 93 GLU GLY ILE ASP MET LEU LEU GLN VAL LEU LYS GLY THR
SEQRES 5 A 93 LYS GLU SER SER LYS ARG CYS VAL LEU ARG THR LYS ILE
SEQRES 6 A 93 SER GLY TYR MET ASP ARG ALA GLU ASN ILE LYS LYS TYR
SEQRES 7 A 93 LEU ASP GLN GLU LYS GLU ASP GLY LYS SER GLY PRO SER
SEQRES 8 A 93 SER GLY
HELIX 1 1 SER A 10 GLU A 28 1 19
HELIX 2 2 ARG A 30 GLY A 51 1 22
HELIX 3 3 GLU A 54 GLY A 86 1 33
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - r 2 2 Bytes