Header list of 1wf9.pdb file
Complete list - r 2 2 Bytes
HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 26-MAY-04 1WF9
TITLE SOLUTION STRUCTURE OF A NOVEL BETA-GRASP FOLD LIKE DOMAIN OF
TITLE 2 HYPOTHETICAL PROTEIN (ARABIDOPSIS THALIANA)
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: NPL4 FAMILY PROTEIN;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: HYPOTHETICAL DOMAIN;
COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA;
SOURCE 3 ORGANISM_COMMON: THALE CRESS;
SOURCE 4 ORGANISM_TAXID: 3702;
SOURCE 5 GENE: RIKEN RAFL09-18-B15;
SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P030212-84;
SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS
KEYWDS BETA-GRASP FOLD LIKE DOMAIN, ARABIDOPSIS THALIANA, HYPOTHETICAL
KEYWDS 2 PROTEIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN
KEYWDS 3 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL
KEYWDS 4 GENOMICS/PROTEOMICS INITIATIVE, RSGI, UNKNOWN FUNCTION
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR X.QIN,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS
AUTHOR 2 INITIATIVE (RSGI)
REVDAT 3 02-MAR-22 1WF9 1 REMARK SEQADV
REVDAT 2 24-FEB-09 1WF9 1 VERSN
REVDAT 1 07-JUN-05 1WF9 0
JRNL AUTH X.QIN,F.HAYASHI,S.YOKOYAMA
JRNL TITL SOLUTION STRUCTURE OF A NOVEL BETA-GRASP FOLD LIKE DOMAIN OF
JRNL TITL 2 HYPOTHETICAL PROTEIN (ARABIDOPSIS THALIANA)
JRNL REF TO BE PUBLISHED
JRNL REFN
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : VNMR 6.1C, CYANA 1.0.7
REMARK 3 AUTHORS : VARIAN (VNMR), GUENTERT, P. (CYANA)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 1WF9 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-JUN-04.
REMARK 100 THE DEPOSITION ID IS D_1000023515.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 298
REMARK 210 PH : 6.0
REMARK 210 IONIC STRENGTH : 120MM
REMARK 210 PRESSURE : AMBIENT
REMARK 210 SAMPLE CONTENTS : 1.07MM 13C, 15N-LABELED PROTEIN;
REMARK 210 20MM PINA (PH6.0); 100MM NACL;
REMARK 210 1MM D-DTT; 0.02% NAN3
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N
REMARK 210 -SEPARATED_NOESY
REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ
REMARK 210 SPECTROMETER MODEL : INOVA
REMARK 210 SPECTROMETER MANUFACTURER : VARIAN
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NMRPIPE 20020425, NMRVIEW 5.0.4,
REMARK 210 KUJIRA 0.854, CYANA 1.0.7
REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 100
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20
REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST
REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES
REMARK 210 WITH THE LOWEST ENERGY, TARGET
REMARK 210 FUNCTION
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O LYS A 34 HE22 GLN A 48 1.54
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 GLN A 40 -60.79 -103.20
REMARK 500 1 THR A 52 31.42 -90.71
REMARK 500 1 ASN A 82 75.05 68.47
REMARK 500 1 HIS A 85 84.58 -60.70
REMARK 500 1 SER A 87 163.28 -41.59
REMARK 500 1 THR A 98 -165.34 -122.92
REMARK 500 2 SER A 2 80.21 44.37
REMARK 500 2 VAL A 23 -166.01 -124.61
REMARK 500 2 ASP A 24 -65.35 -103.66
REMARK 500 2 LEU A 33 -73.54 -65.78
REMARK 500 2 HIS A 46 -29.47 -39.68
REMARK 500 2 THR A 52 35.48 -89.70
REMARK 500 2 THR A 69 59.31 -115.67
REMARK 500 2 ASN A 82 61.61 71.75
REMARK 500 2 SER A 87 173.11 -57.48
REMARK 500 2 SER A 102 -68.44 -100.49
REMARK 500 2 SER A 105 87.09 -163.50
REMARK 500 3 SER A 3 92.51 -173.68
REMARK 500 3 SER A 6 -57.45 -150.68
REMARK 500 3 ASP A 16 37.58 -140.51
REMARK 500 3 VAL A 23 -165.42 -122.56
REMARK 500 3 LEU A 36 -70.57 -57.48
REMARK 500 3 ASN A 82 70.16 66.21
REMARK 500 3 SER A 87 175.11 -48.29
REMARK 500 3 ARG A 100 158.85 -41.39
REMARK 500 3 SER A 102 165.78 71.00
REMARK 500 4 SER A 2 93.70 48.22
REMARK 500 4 VAL A 23 -166.49 -126.13
REMARK 500 4 ASN A 82 43.43 80.08
REMARK 500 4 HIS A 85 92.29 -58.36
REMARK 500 4 SER A 87 171.76 -52.31
REMARK 500 4 GLU A 96 -173.00 -69.05
REMARK 500 5 SER A 3 78.45 -100.74
REMARK 500 5 VAL A 23 -164.91 -127.45
REMARK 500 5 ASP A 24 -62.93 -105.98
REMARK 500 5 THR A 52 33.83 -94.12
REMARK 500 5 ASN A 82 48.10 76.04
REMARK 500 5 HIS A 85 107.93 -51.35
REMARK 500 5 SER A 87 167.84 -45.16
REMARK 500 5 GLU A 96 -176.90 -55.58
REMARK 500 5 THR A 98 -166.24 -74.04
REMARK 500 6 ASP A 16 27.90 -154.19
REMARK 500 6 VAL A 23 -164.87 -122.57
REMARK 500 6 ASP A 39 -61.27 -93.19
REMARK 500 6 ASN A 82 71.40 63.85
REMARK 500 6 HIS A 85 94.88 -52.82
REMARK 500 7 VAL A 23 -168.49 -119.46
REMARK 500 7 LEU A 36 -70.66 -45.43
REMARK 500 7 HIS A 46 -29.86 -39.79
REMARK 500 7 THR A 52 34.74 -91.38
REMARK 500
REMARK 500 THIS ENTRY HAS 167 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: ATR001004807 RELATED DB: TARGETDB
DBREF 1WF9 A 8 101 UNP Q9LYC2 Q9LYC2_ARATH 2 95
SEQADV 1WF9 GLY A 1 UNP Q9LYC2 CLONING ARTIFACT
SEQADV 1WF9 SER A 2 UNP Q9LYC2 CLONING ARTIFACT
SEQADV 1WF9 SER A 3 UNP Q9LYC2 CLONING ARTIFACT
SEQADV 1WF9 GLY A 4 UNP Q9LYC2 CLONING ARTIFACT
SEQADV 1WF9 SER A 5 UNP Q9LYC2 CLONING ARTIFACT
SEQADV 1WF9 SER A 6 UNP Q9LYC2 CLONING ARTIFACT
SEQADV 1WF9 GLY A 7 UNP Q9LYC2 CLONING ARTIFACT
SEQADV 1WF9 SER A 102 UNP Q9LYC2 CLONING ARTIFACT
SEQADV 1WF9 GLY A 103 UNP Q9LYC2 CLONING ARTIFACT
SEQADV 1WF9 PRO A 104 UNP Q9LYC2 CLONING ARTIFACT
SEQADV 1WF9 SER A 105 UNP Q9LYC2 CLONING ARTIFACT
SEQADV 1WF9 SER A 106 UNP Q9LYC2 CLONING ARTIFACT
SEQADV 1WF9 GLY A 107 UNP Q9LYC2 CLONING ARTIFACT
SEQRES 1 A 107 GLY SER SER GLY SER SER GLY THR MET LEU ARG VAL ARG
SEQRES 2 A 107 SER ARG ASP GLY LEU GLU ARG VAL SER VAL ASP GLY PRO
SEQRES 3 A 107 HIS ILE THR VAL SER GLN LEU LYS THR LEU ILE GLN ASP
SEQRES 4 A 107 GLN LEU GLN ILE PRO ILE HIS ASN GLN THR LEU SER THR
SEQRES 5 A 107 ASN ARG ASN LEU LEU LEU ALA LYS SER PRO SER ASP PHE
SEQRES 6 A 107 LEU ALA PHE THR ASP MET ALA ASP PRO ASN LEU ARG ILE
SEQRES 7 A 107 SER SER LEU ASN LEU ALA HIS GLY SER MET VAL TYR LEU
SEQRES 8 A 107 ALA TYR GLU GLY GLU ARG THR ILE ARG GLY SER GLY PRO
SEQRES 9 A 107 SER SER GLY
HELIX 1 1 THR A 29 LEU A 41 1 13
HELIX 2 2 ASN A 53 LEU A 58 5 6
HELIX 3 3 SER A 61 LEU A 66 1 6
HELIX 4 4 ARG A 77 LEU A 81 5 5
SHEET 1 A 3 LEU A 18 VAL A 23 0
SHEET 2 A 3 THR A 8 ARG A 13 -1 N THR A 8 O VAL A 23
SHEET 3 A 3 MET A 88 TYR A 90 1 O VAL A 89 N ARG A 11
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - r 2 2 Bytes