Header list of 1wf5.pdb file
Complete list - r 2 2 Bytes
HEADER CELL ADHESION 26-MAY-04 1WF5
TITLE SOLUTION STRUCTURE OF THE FIRST FN3 DOMAIN OF SIDEKICK-2 PROTEIN
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: SIDEKICK 2 PROTEIN;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: FNIII DOMAIN;
COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: KAZUSA CDNA FH00815;
SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040223-40;
SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS
KEYWDS FNIII DOMAIN, SIDEKICK-2, STRUCTURAL GENOMICS, NPPSFA, NATIONAL
KEYWDS 2 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN
KEYWDS 3 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, CELL ADHESION
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR X.QIN,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS
AUTHOR 2 INITIATIVE (RSGI)
REVDAT 3 02-MAR-22 1WF5 1 REMARK SEQADV
REVDAT 2 24-FEB-09 1WF5 1 VERSN
REVDAT 1 07-JUN-05 1WF5 0
JRNL AUTH X.QIN,F.HAYASHI,S.YOKOYAMA
JRNL TITL SOLUTION STRUCTURE OF THE FIRST FN3 DOMAIN OF SIDEKICK-2
JRNL TITL 2 PROTEIN
JRNL REF TO BE PUBLISHED
JRNL REFN
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : VNMR 6.1C, CYANA 1.0.7
REMARK 3 AUTHORS : VARIAN (VNMR), GUENTERT, P. (CYANA)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 1WF5 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-MAY-04.
REMARK 100 THE DEPOSITION ID IS D_1000023511.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 298
REMARK 210 PH : 7.0
REMARK 210 IONIC STRENGTH : 120MM
REMARK 210 PRESSURE : AMBIENT
REMARK 210 SAMPLE CONTENTS : 1.29MM 13C,15N-LABELED PROTEIN;
REMARK 210 20MM PINA(PH7.0); 100MM NACL;
REMARK 210 1MM D-DTT; 0.02%NAN3
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N
REMARK 210 -SEPARATED_NOESY
REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ
REMARK 210 SPECTROMETER MODEL : INOVA
REMARK 210 SPECTROMETER MANUFACTURER : VARIAN
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NMRPIPE 20020425, NMRVIEW 5.0.4,
REMARK 210 KUJIRA 0.854, CYANA 1.0.7
REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 100
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20
REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST
REMARK 210 RESTRAINT VIOLATIONS,STRUCTURES
REMARK 210 WITH THE LOWEST ENERGY,TARGET
REMARK 210 FUNCTION
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 H VAL A 84 OH TYR A 89 1.53
REMARK 500 O GLY A 46 H SER A 48 1.55
REMARK 500 H LEU A 38 O VAL A 78 1.56
REMARK 500 H TYR A 89 O VAL A 111 1.59
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 SER A 2 -57.60 -176.80
REMARK 500 1 SER A 6 -59.89 -137.94
REMARK 500 1 ARG A 8 -57.83 -161.28
REMARK 500 1 SER A 9 136.25 62.45
REMARK 500 1 HIS A 11 122.15 -177.73
REMARK 500 1 LEU A 12 172.08 66.95
REMARK 500 1 ARG A 13 154.40 -46.96
REMARK 500 1 HIS A 23 54.13 37.88
REMARK 500 1 VAL A 31 -49.18 -178.01
REMARK 500 1 ASN A 47 -53.91 69.54
REMARK 500 1 ILE A 51 -55.33 -124.66
REMARK 500 1 GLU A 59 -167.11 -68.33
REMARK 500 1 ASN A 60 96.66 -55.09
REMARK 500 1 VAL A 66 101.20 -55.23
REMARK 500 1 ARG A 92 107.73 -167.46
REMARK 500 1 GLU A 109 127.44 -38.07
REMARK 500 1 ARG A 110 99.62 -38.92
REMARK 500 2 SER A 5 110.06 62.15
REMARK 500 2 ARG A 8 165.61 57.06
REMARK 500 2 LEU A 12 -177.67 60.08
REMARK 500 2 HIS A 23 54.52 37.87
REMARK 500 2 LEU A 28 173.62 -47.29
REMARK 500 2 VAL A 31 -54.42 -150.56
REMARK 500 2 ASN A 47 -45.55 76.08
REMARK 500 2 GLU A 59 -147.41 -62.04
REMARK 500 2 VAL A 66 101.06 -57.07
REMARK 500 2 ARG A 92 108.90 -170.33
REMARK 500 2 ARG A 110 96.78 -37.64
REMARK 500 2 SER A 119 96.94 48.93
REMARK 500 3 SER A 2 91.33 59.85
REMARK 500 3 SER A 6 -55.77 -177.51
REMARK 500 3 ALA A 10 -62.34 -108.51
REMARK 500 3 LEU A 12 108.78 64.68
REMARK 500 3 PRO A 18 -168.67 -75.00
REMARK 500 3 LEU A 28 173.34 -48.85
REMARK 500 3 VAL A 31 -42.03 178.68
REMARK 500 3 ASN A 47 32.65 -170.77
REMARK 500 3 GLU A 59 -153.55 -62.63
REMARK 500 3 ASN A 60 92.35 -69.29
REMARK 500 3 TRP A 64 108.83 -49.40
REMARK 500 3 VAL A 66 100.60 -55.84
REMARK 500 3 ALA A 86 46.48 74.74
REMARK 500 3 ARG A 92 114.01 -179.23
REMARK 500 3 LYS A 106 163.46 -42.86
REMARK 500 3 THR A 108 154.39 -44.52
REMARK 500 3 ARG A 110 104.87 -38.04
REMARK 500 3 GLU A 115 153.70 -37.56
REMARK 500 4 SER A 2 -58.55 -144.14
REMARK 500 4 ARG A 8 -57.58 -137.77
REMARK 500 4 HIS A 11 -75.48 -90.55
REMARK 500
REMARK 500 THIS ENTRY HAS 318 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: HSK002101486.4 RELATED DB: TARGETDB
DBREF 1WF5 A 8 115 UNP Q58EX2 Q58EX2_HUMAN 204 311
SEQADV 1WF5 GLY A 1 UNP Q58EX2 CLONING ARTIFACT
SEQADV 1WF5 SER A 2 UNP Q58EX2 CLONING ARTIFACT
SEQADV 1WF5 SER A 3 UNP Q58EX2 CLONING ARTIFACT
SEQADV 1WF5 GLY A 4 UNP Q58EX2 CLONING ARTIFACT
SEQADV 1WF5 SER A 5 UNP Q58EX2 CLONING ARTIFACT
SEQADV 1WF5 SER A 6 UNP Q58EX2 CLONING ARTIFACT
SEQADV 1WF5 GLY A 7 UNP Q58EX2 CLONING ARTIFACT
SEQADV 1WF5 SER A 116 UNP Q58EX2 CLONING ARTIFACT
SEQADV 1WF5 GLY A 117 UNP Q58EX2 CLONING ARTIFACT
SEQADV 1WF5 PRO A 118 UNP Q58EX2 CLONING ARTIFACT
SEQADV 1WF5 SER A 119 UNP Q58EX2 CLONING ARTIFACT
SEQADV 1WF5 SER A 120 UNP Q58EX2 CLONING ARTIFACT
SEQADV 1WF5 GLY A 121 UNP Q58EX2 CLONING ARTIFACT
SEQRES 1 A 121 GLY SER SER GLY SER SER GLY ARG SER ALA HIS LEU ARG
SEQRES 2 A 121 VAL ARG GLN LEU PRO HIS ALA PRO GLU HIS PRO VAL ALA
SEQRES 3 A 121 THR LEU SER THR VAL GLU ARG ARG ALA ILE ASN LEU THR
SEQRES 4 A 121 TRP THR LYS PRO PHE ASP GLY ASN SER PRO LEU ILE ARG
SEQRES 5 A 121 TYR ILE LEU GLU MET SER GLU ASN ASN ALA PRO TRP THR
SEQRES 6 A 121 VAL LEU LEU ALA SER VAL ASP PRO LYS ALA THR SER VAL
SEQRES 7 A 121 THR VAL LYS GLY LEU VAL PRO ALA ARG SER TYR GLN PHE
SEQRES 8 A 121 ARG LEU CYS ALA VAL ASN ASP VAL GLY LYS GLY GLN PHE
SEQRES 9 A 121 SER LYS ASP THR GLU ARG VAL SER LEU PRO GLU SER GLY
SEQRES 10 A 121 PRO SER SER GLY
SHEET 1 A 3 VAL A 25 LEU A 28 0
SHEET 2 A 3 ALA A 35 THR A 39 -1 O ASN A 37 N THR A 27
SHEET 3 A 3 SER A 77 LYS A 81 -1 O VAL A 78 N LEU A 38
SHEET 1 B 4 THR A 65 LEU A 68 0
SHEET 2 B 4 LEU A 50 SER A 58 -1 N MET A 57 O THR A 65
SHEET 3 B 4 SER A 88 ASN A 97 -1 O VAL A 96 N ILE A 51
SHEET 4 B 4 LYS A 101 PHE A 104 -1 O GLY A 102 N ALA A 95
SHEET 1 C 4 THR A 65 LEU A 68 0
SHEET 2 C 4 LEU A 50 SER A 58 -1 N MET A 57 O THR A 65
SHEET 3 C 4 SER A 88 ASN A 97 -1 O VAL A 96 N ILE A 51
SHEET 4 C 4 VAL A 111 SER A 112 -1 O VAL A 111 N TYR A 89
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - r 2 2 Bytes