Header list of 1w6b.pdb file
Complete list - y 9 2 Bytes
HEADER TOXIN 17-AUG-04 1W6B
TITLE SOLUTION NMR STRUCTURE OF A LONG NEUROTOXIN FROM THE VENOM OF THE
TITLE 2 ASIAN COBRA, 20 STRUCTURES
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: LONG NEUROTOXIN 1;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: NEUROTOXIN I, NTX-1
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: NAJA OXIANA;
SOURCE 3 ORGANISM_COMMON: ASIAN COBRA;
SOURCE 4 ORGANISM_TAXID: 8657;
SOURCE 5 ORGAN: VENOM GLANDS
KEYWDS VENOM, LONG NEUROTOXIN, TOXIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR M.TALEBZADEH-FAROOJI,M.AMININASAB,M.M.ELMI,H.NADERI-MANESH,
AUTHOR 2 M.N.SARBOLOUKI
REVDAT 3 09-MAY-18 1W6B 1 TITLE JRNL REMARK
REVDAT 2 24-FEB-09 1W6B 1 VERSN
REVDAT 1 22-DEC-04 1W6B 0
JRNL AUTH M.TALEBZADEH-FAROOJI,M.AMININASAB,M.M.ELMI,H.NADERI-MANESH,
JRNL AUTH 2 M.N.SARBOLOUKI
JRNL TITL SOLUTION STRUCTURE OF LONG NEUROTOXIN NTX-1 FROM THE VENOM
JRNL TITL 2 OF NAJA NAJA OXIANA BY 2D-NMR SPECTROSCOPY.
JRNL REF EUR. J. BIOCHEM. V. 271 4950 2004
JRNL REFN ISSN 0014-2956
JRNL PMID 15606783
JRNL DOI 10.1111/J.1432-1033.2004.04465.X
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : ARIA1.2
REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS, GROSSE-
REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, RICE,
REMARK 3 SIMONSON,WARREN
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN THE
REMARK 3 JRNL CITATION ABOVE.
REMARK 4
REMARK 4 1W6B COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-AUG-04.
REMARK 100 THE DEPOSITION ID IS D_1290020751.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 293.0
REMARK 210 PH : 3.2
REMARK 210 IONIC STRENGTH : NULL
REMARK 210 PRESSURE : 1.0 ATM
REMARK 210 SAMPLE CONTENTS : 90% WATER/10% D2O
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : TOCSY; COSY; HSQC; NOESY
REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ
REMARK 210 SPECTROMETER MODEL : DRX
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : XEASY
REMARK 210 METHOD USED : ARIA
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 900
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20
REMARK 210 CONFORMERS, SELECTION CRITERIA : MININUM ENERGY AND LEAST
REMARK 210 RESTRAINT VIOLATION
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL
REMARK 210
REMARK 210 REMARK: NONE
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 400
REMARK 400 COMPOUND
REMARK 400 FUNCTION: PRODUCES PERIPHERAL PARALYSIS BY BLOCKING NEUROMUSCULAR
REMARK 400 TRANSMISSION AT THE POSTSYNAPTIC SITE. BINDS TO MUSCULAR AND
REMARK 400 NEURONAL (ONLY ALPHA-7 ALPHA-8 ALPHA-9) NICOTINIC ACETYLCHOLINE
REMARK 400 RECEPTORS
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 PRO A 7 161.07 -44.13
REMARK 500 1 PRO A 9 41.24 -73.37
REMARK 500 1 ILE A 10 104.44 -42.79
REMARK 500 1 ASN A 20 -6.21 -169.99
REMARK 500 1 CYS A 28 116.07 -162.10
REMARK 500 1 ASP A 29 -97.70 -150.16
REMARK 500 1 SER A 34 -74.25 -137.80
REMARK 500 1 ARG A 35 14.47 -141.57
REMARK 500 1 GLU A 51 -137.01 -105.65
REMARK 500 1 SER A 52 -75.46 -86.95
REMARK 500 1 THR A 61 145.71 -171.28
REMARK 500 1 PRO A 68 -18.51 -49.44
REMARK 500 1 GLN A 70 -91.22 -48.16
REMARK 500 2 PRO A 9 37.39 -70.00
REMARK 500 2 ILE A 10 97.88 -41.72
REMARK 500 2 ASN A 20 1.63 -158.24
REMARK 500 2 CYS A 28 113.64 -163.05
REMARK 500 2 ASP A 29 -98.78 -151.47
REMARK 500 2 CYS A 32 -94.39 -91.04
REMARK 500 2 SER A 34 -74.37 -151.05
REMARK 500 2 GLU A 51 -134.68 -112.46
REMARK 500 2 SER A 52 -75.53 -84.97
REMARK 500 2 ASP A 63 -9.29 -59.19
REMARK 500 2 PRO A 66 -158.33 -98.49
REMARK 500 3 PRO A 7 152.26 -35.05
REMARK 500 3 PRO A 9 43.80 -76.01
REMARK 500 3 ILE A 10 103.59 -39.93
REMARK 500 3 ASN A 20 14.48 -159.19
REMARK 500 3 CYS A 28 113.81 -163.59
REMARK 500 3 ASP A 29 -96.73 -151.38
REMARK 500 3 CYS A 32 -73.77 -74.75
REMARK 500 3 SER A 34 -34.09 -171.50
REMARK 500 3 ARG A 35 11.01 -150.36
REMARK 500 3 GLU A 51 -144.78 -109.49
REMARK 500 3 SER A 52 -76.16 -74.10
REMARK 500 3 GLN A 70 -169.51 -111.85
REMARK 500 4 ILE A 8 -53.66 -28.59
REMARK 500 4 PRO A 9 38.78 -71.29
REMARK 500 4 ILE A 10 100.47 -42.84
REMARK 500 4 ASN A 20 16.13 -150.16
REMARK 500 4 ASP A 29 -95.85 -150.47
REMARK 500 4 CYS A 32 -70.85 -74.92
REMARK 500 4 SER A 34 -55.78 -121.80
REMARK 500 4 LYS A 37 153.96 -34.01
REMARK 500 4 ALA A 44 145.86 -173.06
REMARK 500 4 GLU A 51 -142.49 -111.26
REMARK 500 4 SER A 52 -75.50 -79.40
REMARK 500 5 PRO A 7 154.04 -42.87
REMARK 500 5 PRO A 9 43.66 -74.76
REMARK 500 5 ILE A 10 103.91 -39.58
REMARK 500
REMARK 500 THIS ENTRY HAS 249 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 1NTN RELATED DB: PDB
REMARK 900 NEUROTOXIN-I
DBREF 1W6B A 1 73 UNP P01382 NXL1_NAJOX 1 73
SEQRES 1 A 73 ILE THR CYS TYR LYS THR PRO ILE PRO ILE THR SER GLU
SEQRES 2 A 73 THR CYS ALA PRO GLY GLN ASN LEU CYS TYR THR LYS THR
SEQRES 3 A 73 TRP CYS ASP ALA TRP CYS GLY SER ARG GLY LYS VAL ILE
SEQRES 4 A 73 GLU LEU GLY CYS ALA ALA THR CYS PRO THR VAL GLU SER
SEQRES 5 A 73 TYR GLN ASP ILE LYS CYS CYS SER THR ASP ASP CYS ASN
SEQRES 6 A 73 PRO HIS PRO LYS GLN LYS ARG PRO
HELIX 1 1 THR A 61 ASN A 65 5 5
SHEET 1 AA 2 THR A 2 TYR A 4 0
SHEET 2 AA 2 SER A 12 THR A 14 -1 O GLU A 13 N CYS A 3
SHEET 1 AB 3 VAL A 38 ALA A 44 0
SHEET 2 AB 3 LEU A 21 TRP A 27 -1 O LEU A 21 N ALA A 44
SHEET 3 AB 3 ASP A 55 CYS A 59 -1 O ASP A 55 N THR A 26
SSBOND 1 CYS A 3 CYS A 22 1555 1555 2.03
SSBOND 2 CYS A 15 CYS A 43 1555 1555 2.02
SSBOND 3 CYS A 28 CYS A 32 1555 1555 2.03
SSBOND 4 CYS A 47 CYS A 58 1555 1555 2.03
SSBOND 5 CYS A 59 CYS A 64 1555 1555 2.04
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - y 9 2 Bytes