Header list of 1w1n.pdb file
Complete list - 2 20 Bytes
HEADER TRANSFERASE 23-JUN-04 1W1N
TITLE THE SOLUTION STRUCTURE OF THE FATC DOMAIN OF THE PROTEIN KINASE TOR1
TITLE 2 FROM YEAST
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: PHOSPHATIDYLINOSITOL 3-KINASE TOR1;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: FATC, RESIDUES 2438-2470;
COMPND 5 SYNONYM: PI3-KINASE RELATED, PTDINS-3-KINASE RELATED, PI3K RELATED;
COMPND 6 EC: 2.7.1.137;
COMPND 7 ENGINEERED: YES;
COMPND 8 OTHER_DETAILS: DISULFIDE BOND BETWEEN RESIDUES C2460 (23) AND C2467
COMPND 9 (30)
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE;
SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST;
SOURCE 4 ORGANISM_TAXID: 4932;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 7 EXPRESSION_SYSTEM_VARIANT: ROSETTA;
SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PGEV2
KEYWDS TOR, TARGET OF RAPAMYCIN, SER/THR KINASE, REDOX-REGULATION, DISULFIDE
KEYWDS 2 BOND, TRANSFERASE
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR S.A.DAMES,J.M.MULET,K.RATHGEB-SZABO,M.N.HALL,S.GRZESIEK
REVDAT 6 02-MAY-18 1W1N 1 SOURCE JRNL REMARK
REVDAT 5 24-FEB-09 1W1N 1 VERSN
REVDAT 4 19-SEP-06 1W1N 1 SEQRES
REVDAT 3 25-MAY-05 1W1N 1 JRNL
REVDAT 2 01-APR-05 1W1N 1 ATOM
REVDAT 1 16-MAR-05 1W1N 0
JRNL AUTH S.A.DAMES,J.M.MULET,K.RATHGEB-SZABO,M.N.HALL,S.GRZESIEK
JRNL TITL THE SOLUTION STRUCTURE OF THE FATC DOMAIN OF THE PROTEIN
JRNL TITL 2 KINASE TARGET OF RAPAMYCIN SUGGESTS A ROLE FOR
JRNL TITL 3 REDOX-DEPENDENT STRUCTURAL AND CELLULAR STABILITY.
JRNL REF J. BIOL. CHEM. V. 280 20558 2005
JRNL REFN ISSN 0021-9258
JRNL PMID 15772072
JRNL DOI 10.1074/JBC.M501116200
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : XPLOR-NIH
REMARK 3 AUTHORS : BRUNGER, SCHWIETERS
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: SHIFTS HAVE BEEN DEPOSITED AT BMRB
REMARK 3 UNDER ACCESSION NUMBER 6228
REMARK 4
REMARK 4 1W1N COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-JUN-04.
REMARK 100 THE DEPOSITION ID IS D_1290020211.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 298.0; 298.0; 298.0
REMARK 210 PH : 6.0; 6.0; 6.0
REMARK 210 IONIC STRENGTH : 10; 10; 10
REMARK 210 PRESSURE : 1.0 ATM; 1.0 ATM; 1.0 ATM
REMARK 210 SAMPLE CONTENTS : NULL; NULL; NULL
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 15N-HSQC; 3D-CBCANH; 3D
REMARK 210 CBCA(CO)NH; 3D-HBHACBCACONH; 3D-
REMARK 210 CCONH-TOCSY; 3D HNCO; 3D HNHA;
REMARK 210 3D-15N-NOESY; 3D-15N- ROESY;
REMARK 210 13CO-13CG -HSQC; 15N- 13CG-HSQC;
REMARK 210 15N-T1; 15N-T2; 1H- 15N-NOE; 13-
REMARK 210 HSQC; 3D-13C- NOESY; 3D HCCH-
REMARK 210 TOCSY; 3D- HACAHB-COSY; 15N-IPAP-
REMARK 210 HSQC
REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ
REMARK 210 SPECTROMETER MODEL : DRX
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : XPLOR-NIH, NMRVIEW
REMARK 210 METHOD USED : RESTRAINED TORSION ANGLE
REMARK 210 MOLECULAR DYNAMICS
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 200
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20
REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY AND LEAST
REMARK 210 RESTRAINED VIOLATION
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 2
REMARK 210
REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING MULTINUCLEAR NMR
REMARK 210 EXPERIMENTS ON 15- OR 15N-13C-LABELED YEAST TOR1 FATC.
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 400
REMARK 400 COMPOUND
REMARK 400 PHOSPHATIDYLINOSITOL 3-KINASE HOMOLOG REQUIRED FOR G1
REMARK 400 PROGRESSION. TARGET OF THE ANTIBIOTIC RAPAMYCIN.
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O ILE A 19 H CYS A 23 1.58
REMARK 500 O LYS A 11 H GLN A 15 1.58
REMARK 500 O GLN A 15 HG SER A 18 1.59
REMARK 500 O GLN A 14 H SER A 18 1.59
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 PRO A 6 40.67 -71.43
REMARK 500 1 LYS A 11 -33.32 -34.41
REMARK 500 1 SER A 18 -72.45 -43.42
REMARK 500 1 TYR A 26 -148.67 -98.90
REMARK 500 2 GLU A 2 -143.65 37.13
REMARK 500 2 ASP A 4 39.48 -153.04
REMARK 500 2 PRO A 6 29.20 -70.08
REMARK 500 2 LYS A 11 -38.68 -34.82
REMARK 500 2 SER A 18 -72.51 -43.41
REMARK 500 2 PRO A 31 47.10 -77.14
REMARK 500 3 GLU A 2 -147.37 51.35
REMARK 500 3 ASP A 4 57.33 -171.42
REMARK 500 3 PRO A 6 29.73 -70.64
REMARK 500 3 LYS A 11 -39.47 -34.98
REMARK 500 3 SER A 18 -75.12 -45.75
REMARK 500 3 TYR A 26 -138.98 -95.28
REMARK 500 4 GLU A 2 -82.38 -58.54
REMARK 500 4 PRO A 6 21.66 -72.95
REMARK 500 4 ASP A 10 -73.29 -58.04
REMARK 500 4 LYS A 11 -36.44 -34.02
REMARK 500 4 SER A 18 -78.11 -46.69
REMARK 500 4 TYR A 26 -137.66 -96.15
REMARK 500 5 GLU A 2 -147.90 -80.33
REMARK 500 5 ASP A 4 39.30 -173.31
REMARK 500 5 PRO A 6 24.56 -71.99
REMARK 500 5 LYS A 11 -31.68 -34.47
REMARK 500 5 SER A 18 -77.30 -43.93
REMARK 500 5 TRP A 29 65.27 -65.41
REMARK 500 5 PHE A 32 -32.19 -139.04
REMARK 500 6 GLU A 2 -15.55 84.35
REMARK 500 6 ASP A 4 41.33 -154.23
REMARK 500 6 PRO A 6 23.67 -68.24
REMARK 500 6 LYS A 11 -39.77 -34.58
REMARK 500 6 SER A 18 -73.53 -44.79
REMARK 500 6 TYR A 26 -137.58 -89.22
REMARK 500 6 PHE A 32 -35.29 -135.50
REMARK 500 7 ASP A 4 65.19 -173.00
REMARK 500 7 PRO A 6 29.10 -73.04
REMARK 500 7 ASP A 10 -70.52 -59.20
REMARK 500 7 SER A 18 -80.95 -46.49
REMARK 500 7 TYR A 26 -141.74 -95.67
REMARK 500 7 PHE A 32 -37.06 -137.36
REMARK 500 8 GLU A 2 -6.33 84.36
REMARK 500 8 PRO A 6 40.02 -72.19
REMARK 500 8 LYS A 11 -34.71 -34.37
REMARK 500 8 SER A 18 -80.96 -44.22
REMARK 500 8 TRP A 29 61.13 -67.01
REMARK 500 9 GLU A 2 -85.77 53.75
REMARK 500 9 ASP A 4 64.30 -157.78
REMARK 500 9 PRO A 6 32.47 -71.65
REMARK 500
REMARK 500 THIS ENTRY HAS 122 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: PLANAR GROUPS
REMARK 500
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS
REMARK 500 AN RMSD GREATER THAN THIS VALUE
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 M RES CSSEQI RMS TYPE
REMARK 500 1 ARG A 21 0.32 SIDE CHAIN
REMARK 500 2 ARG A 21 0.09 SIDE CHAIN
REMARK 500 3 ARG A 21 0.20 SIDE CHAIN
REMARK 500 4 ARG A 21 0.24 SIDE CHAIN
REMARK 500 5 ARG A 21 0.29 SIDE CHAIN
REMARK 500 7 ARG A 21 0.31 SIDE CHAIN
REMARK 500 8 ARG A 21 0.30 SIDE CHAIN
REMARK 500 9 ARG A 21 0.29 SIDE CHAIN
REMARK 500 10 ARG A 21 0.11 SIDE CHAIN
REMARK 500 11 ARG A 21 0.31 SIDE CHAIN
REMARK 500 13 ARG A 21 0.26 SIDE CHAIN
REMARK 500 14 ARG A 21 0.16 SIDE CHAIN
REMARK 500 15 ARG A 21 0.23 SIDE CHAIN
REMARK 500 16 ARG A 21 0.32 SIDE CHAIN
REMARK 500 17 ARG A 21 0.29 SIDE CHAIN
REMARK 500 18 ARG A 21 0.17 SIDE CHAIN
REMARK 500 19 ARG A 21 0.18 SIDE CHAIN
REMARK 500 20 ARG A 21 0.27 SIDE CHAIN
REMARK 500
REMARK 500 REMARK: NULL
DBREF 1W1N A 1 33 UNP P35169 TOR1_YEAST 2438 2470
SEQRES 1 A 33 ASN GLU LEU ASP VAL PRO GLU GLN VAL ASP LYS LEU ILE
SEQRES 2 A 33 GLN GLN ALA THR SER ILE GLU ARG LEU CYS GLN HIS TYR
SEQRES 3 A 33 ILE GLY TRP CYS PRO PHE TRP
HELIX 1 1 PRO A 6 GLN A 24 1 19
SSBOND 1 CYS A 23 CYS A 30 1555 1555 2.02
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - 2 20 Bytes