Header list of 1vpu.pdb file
Complete list - 2 20 Bytes
HEADER AIDS 28-JAN-97 1VPU
TITLE NMR SOLUTION STRUCTURE OF THE HIV-1 VPU CYTOPLASMIC DOMAIN, 9
TITLE 2 STRUCTURES
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: VPU PROTEIN;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: CYTOPLASMIC DOMAIN RESIDUES 39 - 81;
COMPND 5 SYNONYM: VPU(39-81);
COMPND 6 ENGINEERED: YES;
COMPND 7 MUTATION: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1;
SOURCE 3 ORGANISM_TAXID: 11676;
SOURCE 4 STRAIN: SF162 ISOLATE;
SOURCE 5 CELL_LINE: BL21;
SOURCE 6 GENE: SYNTHETIC GENE;
SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3);
SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 11 EXPRESSION_SYSTEM_VECTOR: PET16B (NOVAGEN);
SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PET16B (NOVAGEN)
KEYWDS HIV, VPU, AIDS
EXPDTA SOLUTION NMR
NUMMDL 9
AUTHOR D.WILLBOLD,S.HOFFMANN,P.ROSCH
REVDAT 3 02-MAR-22 1VPU 1 REMARK
REVDAT 2 24-FEB-09 1VPU 1 VERSN
REVDAT 1 15-MAY-97 1VPU 0
JRNL AUTH D.WILLBOLD,S.HOFFMANN,P.ROSCH
JRNL TITL SECONDARY STRUCTURE AND TERTIARY FOLD OF THE HUMAN
JRNL TITL 2 IMMUNODEFICIENCY VIRUS PROTEIN U (VPU) CYTOPLASMIC DOMAIN IN
JRNL TITL 3 SOLUTION.
JRNL REF EUR.J.BIOCHEM. V. 245 581 1997
JRNL REFN ISSN 0014-2956
JRNL PMID 9182993
JRNL DOI 10.1111/J.1432-1033.1997.T01-1-00581.X
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : X-PLOR
REMARK 3 AUTHORS : BRUNGER (X-PLOR)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 1VPU COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 100 THE DEPOSITION ID IS D_1000177092.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 298
REMARK 210 PH : 7.0
REMARK 210 IONIC STRENGTH : NULL
REMARK 210 PRESSURE : NULL
REMARK 210 SAMPLE CONTENTS : NULL
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY (100; 150; 200 MS MIXING
REMARK 210 TIME)
REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ
REMARK 210 SPECTROMETER MODEL : AMX600
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : X-PLOR
REMARK 210 METHOD USED : SIMULATED ANNEALING, RESTRAINED
REMARK 210 MOLECULAR DYNAMICS
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 25
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 9
REMARK 210 CONFORMERS, SELECTION CRITERIA : ENERGY, AGREEMENT WITH
REMARK 210 EXPERIMENTAL DATA
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL
REMARK 210
REMARK 210 REMARK: REPRESENTATIVE MODEL NUMBER: 3
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 ILE A 39 -77.64 -64.25
REMARK 500 1 GLU A 51 6.65 56.64
REMARK 500 1 GLU A 56 98.13 -69.49
REMARK 500 1 SER A 57 -11.62 78.10
REMARK 500 1 GLU A 58 -129.00 37.06
REMARK 500 1 LEU A 64 -85.58 -96.63
REMARK 500 1 SER A 65 160.81 59.91
REMARK 500 1 ALA A 66 -64.32 65.00
REMARK 500 1 ARG A 70 104.76 -46.00
REMARK 500 1 LEU A 73 105.96 -51.01
REMARK 500 1 ALA A 74 -170.94 -172.08
REMARK 500 2 ASP A 40 -25.73 74.97
REMARK 500 2 GLU A 51 -30.87 61.79
REMARK 500 2 SER A 53 33.67 -93.07
REMARK 500 2 GLU A 58 -62.68 71.51
REMARK 500 2 SER A 65 -90.96 60.00
REMARK 500 2 GLU A 69 42.75 -84.12
REMARK 500 2 HIS A 72 -46.23 177.48
REMARK 500 2 LEU A 73 90.71 20.56
REMARK 500 2 ALA A 74 -165.67 -176.38
REMARK 500 3 GLU A 51 14.59 54.18
REMARK 500 3 SER A 57 47.83 -164.52
REMARK 500 3 LEU A 67 -60.14 -107.52
REMARK 500 3 VAL A 68 72.14 47.90
REMARK 500 3 ARG A 70 79.91 -67.10
REMARK 500 3 HIS A 72 94.32 41.51
REMARK 500 3 ALA A 74 -170.63 -170.56
REMARK 500 4 GLN A 38 84.11 -172.49
REMARK 500 4 ILE A 39 -109.90 -81.20
REMARK 500 4 GLU A 51 13.49 54.81
REMARK 500 4 GLU A 58 -109.83 50.98
REMARK 500 4 GLU A 69 -9.14 -59.91
REMARK 500 4 ARG A 70 108.59 -43.88
REMARK 500 4 ALA A 74 -171.34 -171.77
REMARK 500 5 GLN A 38 58.58 -141.78
REMARK 500 5 GLU A 51 -43.86 57.32
REMARK 500 5 SER A 53 39.10 -98.99
REMARK 500 5 GLU A 58 75.52 57.35
REMARK 500 5 LEU A 64 -42.04 -174.81
REMARK 500 5 SER A 65 -44.98 -21.27
REMARK 500 5 ALA A 66 -66.60 -16.02
REMARK 500 5 LEU A 67 -79.87 -99.25
REMARK 500 5 ALA A 74 -160.04 -160.55
REMARK 500 5 PRO A 75 -93.70 -62.77
REMARK 500 5 TRP A 76 -80.64 26.32
REMARK 500 6 GLU A 51 10.05 56.72
REMARK 500 6 SER A 57 -62.89 72.85
REMARK 500 6 GLU A 58 124.19 75.25
REMARK 500 6 SER A 65 -58.42 64.97
REMARK 500 6 VAL A 68 58.85 -91.56
REMARK 500
REMARK 500 THIS ENTRY HAS 83 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: PLANAR GROUPS
REMARK 500
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS
REMARK 500 AN RMSD GREATER THAN THIS VALUE
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 M RES CSSEQI RMS TYPE
REMARK 500 1 ARG A 41 0.32 SIDE CHAIN
REMARK 500 1 ARG A 45 0.29 SIDE CHAIN
REMARK 500 1 ARG A 49 0.28 SIDE CHAIN
REMARK 500 1 ARG A 70 0.29 SIDE CHAIN
REMARK 500 2 ARG A 41 0.31 SIDE CHAIN
REMARK 500 2 ARG A 45 0.28 SIDE CHAIN
REMARK 500 2 ARG A 49 0.32 SIDE CHAIN
REMARK 500 2 ARG A 70 0.28 SIDE CHAIN
REMARK 500 3 ARG A 41 0.30 SIDE CHAIN
REMARK 500 3 ARG A 45 0.32 SIDE CHAIN
REMARK 500 3 ARG A 49 0.30 SIDE CHAIN
REMARK 500 3 ARG A 70 0.32 SIDE CHAIN
REMARK 500 4 ARG A 45 0.30 SIDE CHAIN
REMARK 500 4 ARG A 49 0.25 SIDE CHAIN
REMARK 500 4 ARG A 70 0.30 SIDE CHAIN
REMARK 500 5 ARG A 41 0.28 SIDE CHAIN
REMARK 500 5 ARG A 45 0.27 SIDE CHAIN
REMARK 500 5 ARG A 49 0.29 SIDE CHAIN
REMARK 500 5 ARG A 70 0.30 SIDE CHAIN
REMARK 500 6 ARG A 41 0.26 SIDE CHAIN
REMARK 500 6 ARG A 45 0.31 SIDE CHAIN
REMARK 500 6 ARG A 49 0.32 SIDE CHAIN
REMARK 500 6 ARG A 70 0.30 SIDE CHAIN
REMARK 500 7 ARG A 41 0.27 SIDE CHAIN
REMARK 500 7 ARG A 45 0.20 SIDE CHAIN
REMARK 500 7 ARG A 49 0.26 SIDE CHAIN
REMARK 500 7 ARG A 70 0.29 SIDE CHAIN
REMARK 500 8 ARG A 41 0.31 SIDE CHAIN
REMARK 500 8 ARG A 45 0.31 SIDE CHAIN
REMARK 500 8 ARG A 49 0.29 SIDE CHAIN
REMARK 500 8 ARG A 70 0.29 SIDE CHAIN
REMARK 500 9 ARG A 41 0.31 SIDE CHAIN
REMARK 500 9 ARG A 45 0.29 SIDE CHAIN
REMARK 500 9 ARG A 49 0.26 SIDE CHAIN
REMARK 500 9 ARG A 70 0.21 SIDE CHAIN
REMARK 500
REMARK 500 REMARK: NULL
DBREF 1VPU A 39 81 UNP P19554 VPU_HV1S1 39 81
SEQRES 1 A 45 LEU GLN ILE ASP ARG LEU ILE ASP ARG ILE THR GLU ARG
SEQRES 2 A 45 ALA GLU ASP SER GLY ASN GLU SER GLU GLY ASP GLN GLU
SEQRES 3 A 45 GLU LEU SER ALA LEU VAL GLU ARG GLY HIS LEU ALA PRO
SEQRES 4 A 45 TRP ASP VAL ASP ASP LEU
HELIX 1 1 ASP A 40 ALA A 50 1 11
HELIX 2 2 ASP A 60 GLU A 63 5 4
HELIX 3 3 PRO A 75 VAL A 78 1 4
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - 2 20 Bytes