Header list of 1veg.pdb file
Complete list - r 2 2 Bytes
HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 31-MAR-04 1VEG
TITLE SOLUTION STRUCTURE OF RSGI RUH-012, A UBA DOMAIN FROM MOUSE CDNA
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: NEDD8 ULTIMATE BUSTER-1;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: UBA DOMAIN;
COMPND 5 SYNONYM: NY-REN-18 ANTIGEN, NUB1, BS4 PROTEIN;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS;
SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE;
SOURCE 4 ORGANISM_TAXID: 10090;
SOURCE 5 GENE: MUS MUSCULUS ADULT MALE MEDULLA OBLONGATA CDNA, RIKEN FULL-
SOURCE 6 LENGTH ENRICHED LIBRARY, CLONE:6330412F12 PRODUCT:NY-REN-18 ANTIGEN,
SOURCE 7 FULL INSERT SEQUENCE;
SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 9 EXPRESSION_SYSTEM_PLASMID: P030324-39;
SOURCE 10 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS SYSTEM
KEYWDS UBIQUITIN ASSOCIATED DOMAIN, UBA DOMAIN, THREE HELIX BUNDLE,
KEYWDS 2 STRUCTURAL GENOMICS, RIKEN STRUCTURAL GENOMICS/PROTEOMICS
KEYWDS 3 INITIATIVE, RSGI, UNKNOWN FUNCTION
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR T.ABE,H.HIROTA,K.IZUMI,M.YOSHIDA,T.YAMAZAKI,S.YOKOYAMA,RIKEN
AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 3 02-MAR-22 1VEG 1 REMARK SEQADV
REVDAT 2 24-FEB-09 1VEG 1 VERSN
REVDAT 1 30-SEP-04 1VEG 0
JRNL AUTH T.ABE,H.HIROTA,K.IZUMI,M.YOSHIDA,T.YAMAZAKI,S.YOKOYAMA
JRNL TITL SOLUTION STRUCTURE OF RSGI RUH-012, A UBA DOMAIN FROM MOUSE
JRNL TITL 2 CDNA
JRNL REF TO BE PUBLISHED
JRNL REFN
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : DELTA 4.2, CYANA 1.0.7
REMARK 3 AUTHORS : JEOL (DELTA), GUNTERT, P. (CYANA)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 1VEG COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-APR-04.
REMARK 100 THE DEPOSITION ID IS D_1000006526.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 298
REMARK 210 PH : 6.0
REMARK 210 IONIC STRENGTH : 100MM
REMARK 210 PRESSURE : AMBIENT
REMARK 210 SAMPLE CONTENTS : 1.1MM RSGI RUH-012 U-15N, 13C;
REMARK 210 20MM PINA BUFFER; 100MM NACL;
REMARK 210 1MM D-DTT; 0.02% NAN3; 10% D2O
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C
REMARK 210 -SEPARATED_NOESY
REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ
REMARK 210 SPECTROMETER MODEL : ECA
REMARK 210 SPECTROMETER MANUFACTURER : JEOL
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4,
REMARK 210 KUJIRA 0.893
REMARK 210 METHOD USED : SIMULATED ANNEALING, TORSION
REMARK 210 ANGLE DYANAMICS
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 100
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20
REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST
REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES
REMARK 210 WITH THE LOWEST ENERGY, TARGET
REMARK 210 FUNCTION
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR
REMARK 210 SPECTROSCOPY.
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O GLU A 31 H GLN A 35 1.46
REMARK 500 O ALA A 61 H ALA A 65 1.48
REMARK 500 O ALA A 60 H LEU A 64 1.49
REMARK 500 O GLN A 58 H GLN A 62 1.53
REMARK 500 O GLN A 30 H ASN A 34 1.58
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 SER A 5 88.04 -170.54
REMARK 500 1 SER A 6 117.79 65.61
REMARK 500 1 MET A 11 177.29 51.09
REMARK 500 1 TRP A 12 74.13 44.50
REMARK 500 1 LEU A 14 -147.78 -136.21
REMARK 500 1 GLN A 15 160.47 57.79
REMARK 500 1 ASP A 16 99.97 53.45
REMARK 500 1 GLU A 20 88.27 -156.81
REMARK 500 1 SER A 27 161.28 -46.83
REMARK 500 1 PHE A 53 40.97 -87.07
REMARK 500 1 GLN A 62 -32.21 -38.00
REMARK 500 1 SER A 70 -23.15 156.31
REMARK 500 1 LEU A 71 161.76 64.42
REMARK 500 2 SER A 2 83.21 -173.01
REMARK 500 2 SER A 3 130.50 -178.31
REMARK 500 2 SER A 5 168.34 64.15
REMARK 500 2 SER A 6 131.99 67.01
REMARK 500 2 ASN A 8 97.88 55.27
REMARK 500 2 TRP A 13 -78.42 66.30
REMARK 500 2 LEU A 14 -152.40 -65.16
REMARK 500 2 ALA A 17 -63.13 -100.09
REMARK 500 2 ASP A 18 95.29 58.49
REMARK 500 2 GLU A 20 121.80 65.76
REMARK 500 2 SER A 32 -39.52 -39.05
REMARK 500 2 VAL A 52 -71.25 -57.93
REMARK 500 2 LEU A 71 157.28 -45.40
REMARK 500 2 LEU A 75 -46.64 -144.33
REMARK 500 2 PHE A 77 97.04 46.86
REMARK 500 2 SER A 82 98.11 50.19
REMARK 500 3 SER A 3 164.94 63.94
REMARK 500 3 SER A 5 121.47 179.23
REMARK 500 3 ASN A 8 95.84 59.48
REMARK 500 3 MET A 11 144.96 -37.78
REMARK 500 3 TRP A 13 -74.97 66.84
REMARK 500 3 LEU A 14 83.01 -61.12
REMARK 500 3 ASP A 16 107.40 176.23
REMARK 500 3 ASP A 18 -50.30 159.93
REMARK 500 3 GLU A 20 87.66 51.82
REMARK 500 3 ASN A 21 -60.67 -126.30
REMARK 500 3 SER A 23 -61.02 -152.87
REMARK 500 3 ALA A 26 98.73 -162.63
REMARK 500 3 SER A 27 131.97 -172.62
REMARK 500 3 PRO A 28 -164.77 -75.00
REMARK 500 3 ASP A 42 131.12 -39.62
REMARK 500 3 PHE A 53 42.71 -86.40
REMARK 500 3 HIS A 67 -66.94 178.73
REMARK 500 3 PHE A 77 97.40 60.75
REMARK 500 3 SER A 81 -57.66 -132.32
REMARK 500 3 SER A 82 -37.63 178.95
REMARK 500 4 SER A 3 129.67 62.36
REMARK 500
REMARK 500 THIS ENTRY HAS 343 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: MMT007010952.1 RELATED DB: TARGETDB
DBREF 1VEG A 8 77 UNP P54729 NUB1_MOUSE 469 538
SEQADV 1VEG GLY A 1 UNP P54729 CLONING ARTIFACT
SEQADV 1VEG SER A 2 UNP P54729 CLONING ARTIFACT
SEQADV 1VEG SER A 3 UNP P54729 CLONING ARTIFACT
SEQADV 1VEG GLY A 4 UNP P54729 CLONING ARTIFACT
SEQADV 1VEG SER A 5 UNP P54729 CLONING ARTIFACT
SEQADV 1VEG SER A 6 UNP P54729 CLONING ARTIFACT
SEQADV 1VEG GLY A 7 UNP P54729 CLONING ARTIFACT
SEQADV 1VEG SER A 78 UNP P54729 CLONING ARTIFACT
SEQADV 1VEG GLY A 79 UNP P54729 CLONING ARTIFACT
SEQADV 1VEG PRO A 80 UNP P54729 CLONING ARTIFACT
SEQADV 1VEG SER A 81 UNP P54729 CLONING ARTIFACT
SEQADV 1VEG SER A 82 UNP P54729 CLONING ARTIFACT
SEQADV 1VEG GLY A 83 UNP P54729 CLONING ARTIFACT
SEQRES 1 A 83 GLY SER SER GLY SER SER GLY ASN PRO HIS MET TRP TRP
SEQRES 2 A 83 LEU GLN ASP ALA ASP PRO GLU ASN ASN SER ARG GLN ALA
SEQRES 3 A 83 SER PRO SER GLN GLU SER ILE ASN GLN LEU VAL TYR MET
SEQRES 4 A 83 GLY PHE ASP THR VAL VAL ALA GLU ALA ALA LEU ARG VAL
SEQRES 5 A 83 PHE GLY GLY ASN VAL GLN LEU ALA ALA GLN THR LEU ALA
SEQRES 6 A 83 HIS HIS GLY GLY SER LEU PRO PRO ASP LEU GLN PHE SER
SEQRES 7 A 83 GLY PRO SER SER GLY
HELIX 1 1 SER A 29 GLY A 40 1 12
HELIX 2 2 ASP A 42 PHE A 53 1 12
HELIX 3 3 ASN A 56 GLY A 68 1 13
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - r 2 2 Bytes