Header list of 1vdj.pdb file
Complete list - r 2 2 Bytes
HEADER CONTRACTILE PROTEIN 22-MAR-04 1VDJ TITLE SOLUTION STRUCTURE OF ACTIN-BINDING DOMAIN OF TROPONIN IN CA2+-BOUND TITLE 2 STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TROPONIN I, FAST SKELETAL MUSCLE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 131-182; COMPND 5 SYNONYM: TROPONIN I, FAST-TWITCH ISOFORM; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS TROPONIN, ACTIN, TROPOMYOSIN, CONTRACTILE PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.MURAKAMI,F.YUMOTO,S.OHKI,T.YASUNAGA,M.TANOKURA,T.WAKABAYASHI REVDAT 4 02-MAR-22 1VDJ 1 REMARK REVDAT 3 24-FEB-09 1VDJ 1 VERSN REVDAT 2 13-SEP-05 1VDJ 1 AUTHOR JRNL REVDAT 1 06-SEP-05 1VDJ 0 JRNL AUTH K.MURAKAMI,F.YUMOTO,S.OHKI,T.YASUNAGA,M.TANOKURA, JRNL AUTH 2 T.WAKABAYASHI JRNL TITL STRUCTURAL BASIS FOR CA(2+)-REGULATED MUSCLE RELAXATION AT JRNL TITL 2 INTERACTION SITES OF TROPONIN WITH ACTIN AND TROPOMYOSIN JRNL REF J.MOL.BIOL. V. 352 178 2005 JRNL REFN ISSN 0022-2836 JRNL PMID 16061251 JRNL DOI 10.1016/J.JMB.2005.06.067 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1VDJ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-MAR-04. REMARK 100 THE DEPOSITION ID IS D_1000006494. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 140 -73.03 -79.67 REMARK 500 1 LYS A 141 93.99 -46.42 REMARK 500 1 VAL A 143 109.72 -37.53 REMARK 500 1 ASP A 147 168.17 55.38 REMARK 500 1 THR A 148 36.24 83.39 REMARK 500 1 GLU A 149 50.89 72.50 REMARK 500 1 LYS A 150 88.63 -163.39 REMARK 500 1 LEU A 154 -172.42 -61.88 REMARK 500 1 VAL A 157 -94.47 33.26 REMARK 500 1 LYS A 162 -46.08 -26.11 REMARK 500 1 ASN A 163 -75.43 -64.78 REMARK 500 1 LYS A 167 -75.39 -39.24 REMARK 500 1 SER A 168 156.53 -39.57 REMARK 500 1 PHE A 177 -80.37 -96.26 REMARK 500 1 GLU A 178 47.65 36.02 REMARK 500 1 ALA A 179 105.73 -40.70 REMARK 500 2 LEU A 140 -87.00 -83.71 REMARK 500 2 GLN A 142 110.52 53.69 REMARK 500 2 VAL A 143 106.85 52.68 REMARK 500 2 ASP A 147 155.78 59.60 REMARK 500 2 THR A 148 69.12 74.23 REMARK 500 2 GLU A 149 73.17 51.13 REMARK 500 2 LYS A 150 91.23 172.93 REMARK 500 2 LEU A 154 -85.43 -108.70 REMARK 500 2 VAL A 157 -89.90 -32.58 REMARK 500 2 LYS A 162 -45.14 -27.57 REMARK 500 2 ASN A 163 -73.72 -62.58 REMARK 500 2 SER A 168 -71.69 -168.60 REMARK 500 2 GLU A 178 90.75 35.18 REMARK 500 2 ALA A 179 -63.09 -144.74 REMARK 500 2 GLU A 181 84.26 61.42 REMARK 500 3 ASN A 133 -29.78 -39.75 REMARK 500 3 LEU A 140 -71.47 -84.80 REMARK 500 3 GLN A 142 28.86 -172.09 REMARK 500 3 VAL A 143 116.59 166.89 REMARK 500 3 ASP A 147 164.14 56.79 REMARK 500 3 THR A 148 40.65 82.57 REMARK 500 3 GLU A 149 58.63 70.92 REMARK 500 3 LYS A 150 82.37 -170.37 REMARK 500 3 ARG A 155 -77.61 -48.44 REMARK 500 3 ASP A 156 -88.37 -28.70 REMARK 500 3 VAL A 157 -72.24 72.10 REMARK 500 3 ASN A 163 -75.37 -67.56 REMARK 500 3 GLU A 166 -75.67 -60.23 REMARK 500 3 MET A 176 -62.06 -95.14 REMARK 500 3 GLU A 178 89.77 23.21 REMARK 500 3 ALA A 179 -85.01 -146.78 REMARK 500 4 LEU A 140 -73.61 -80.99 REMARK 500 4 LYS A 141 -89.16 -35.84 REMARK 500 4 GLN A 142 -169.47 55.33 REMARK 500 REMARK 500 THIS ENTRY HAS 356 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1VDI RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN CA2+-FREE STATE DBREF 1VDJ A 131 182 UNP P68246 TNNI2_CHICK 131 182 SEQRES 1 A 52 LYS VAL ASN MET ASP LEU ARG ALA ASN LEU LYS GLN VAL SEQRES 2 A 52 LYS LYS GLU ASP THR GLU LYS GLU LYS ASP LEU ARG ASP SEQRES 3 A 52 VAL GLY ASP TRP ARG LYS ASN ILE GLU GLU LYS SER GLY SEQRES 4 A 52 MET GLU GLY ARG LYS LYS MET PHE GLU ALA GLY GLU SER HELIX 1 1 LYS A 131 LYS A 141 1 11 HELIX 2 2 VAL A 157 GLU A 178 1 22 SHEET 1 A 2 LYS A 144 LYS A 145 0 SHEET 2 A 2 GLU A 151 LYS A 152 -1 O LYS A 152 N LYS A 144 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1
Complete list - r 2 2 Bytes