Header list of 1v64.pdb file
Complete list - r 2 2 Bytes
HEADER TRANSCRIPTION 27-NOV-03 1V64
TITLE SOLUTION STRUCTURE OF THE 3RD HMG BOX OF MOUSE UBF1
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: NUCLEOLAR TRANSCRIPTION FACTOR 1;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: HMG BOX DOMAIN;
COMPND 5 SYNONYM: UPSTREAM BINDING FACTOR 1, UBF-1;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS;
SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE;
SOURCE 4 ORGANISM_TAXID: 10090;
SOURCE 5 GENE: RIKEN CDNA 1300010N03;
SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P030107-50;
SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS TRANSCRIPTION FACTOR, DNA BINDING, STRUCTURAL GENOMICS, RIKEN
KEYWDS 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, TRANSCRIPTION
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR K.SAITO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN STRUCTURAL
AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 3 02-MAR-22 1V64 1 REMARK SEQADV
REVDAT 2 24-FEB-09 1V64 1 VERSN
REVDAT 1 27-MAY-04 1V64 0
JRNL AUTH K.SAITO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA
JRNL TITL SOLUTION STRUCTURE OF THE 3RD HMG BOX OF MOUSE UBF1
JRNL REF TO BE PUBLISHED
JRNL REFN
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : CNS 1.1
REMARK 3 AUTHORS : BRUNGER, A.T.
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 1V64 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-NOV-03.
REMARK 100 THE DEPOSITION ID IS D_1000006253.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 298
REMARK 210 PH : 7.5
REMARK 210 IONIC STRENGTH : 120
REMARK 210 PRESSURE : AMBIENT
REMARK 210 SAMPLE CONTENTS : 1MM HMG BOX DOMAIN, 20MM D-TRIS
REMARK 210 -HCL, 100MM NACL, 1MM D-DTT,
REMARK 210 0.02% NAN3, 10% D2O
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C
REMARK 210 -SEPARATED_NOESY
REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ
REMARK 210 SPECTROMETER MODEL : AVANCE
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : XWINNMR 2.6, NMRPIPE 20020425,
REMARK 210 NMRVIEW 5, CNS 1.1
REMARK 210 METHOD USED : NULL
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 100
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20
REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST
REMARK 210 ENERGY
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 SER A 3 32.39 -99.29
REMARK 500 1 PHE A 13 45.09 -94.61
REMARK 500 1 ASP A 14 -48.59 -147.62
REMARK 500 1 PRO A 17 -174.35 -66.73
REMARK 500 1 ASP A 38 43.02 -94.95
REMARK 500 1 ASN A 101 41.75 -96.30
REMARK 500 1 ILE A 102 72.75 63.27
REMARK 500 2 SER A 3 90.14 -173.04
REMARK 500 2 PHE A 13 30.34 -97.12
REMARK 500 2 ASP A 14 -57.67 -130.84
REMARK 500 2 PRO A 17 -175.96 -68.57
REMARK 500 2 THR A 18 107.95 -58.92
REMARK 500 2 ASP A 38 45.40 -94.41
REMARK 500 2 ILE A 102 104.78 64.52
REMARK 500 2 PRO A 105 -169.54 -69.82
REMARK 500 3 SER A 3 -46.28 -165.30
REMARK 500 3 GLN A 8 -46.17 -133.46
REMARK 500 3 PRO A 17 -167.67 -69.10
REMARK 500 3 ASP A 38 43.39 -94.55
REMARK 500 3 ASN A 101 30.01 -99.20
REMARK 500 3 ILE A 102 41.54 -106.97
REMARK 500 3 PRO A 105 -167.98 -69.90
REMARK 500 4 SER A 3 -47.23 -139.54
REMARK 500 4 SER A 6 -44.37 -168.73
REMARK 500 4 LYS A 12 35.36 -98.87
REMARK 500 4 PHE A 13 39.51 -177.03
REMARK 500 4 ASP A 14 -59.37 -127.58
REMARK 500 4 PRO A 17 -178.41 -64.82
REMARK 500 4 THR A 18 103.76 -58.12
REMARK 500 4 ASP A 38 44.17 -94.95
REMARK 500 4 SER A 103 94.67 -179.45
REMARK 500 4 SER A 106 81.87 60.46
REMARK 500 4 SER A 107 103.50 60.85
REMARK 500 5 SER A 3 104.57 -164.71
REMARK 500 5 SER A 6 -46.85 -150.90
REMARK 500 5 PHE A 13 31.58 -162.97
REMARK 500 5 PRO A 17 -167.64 -68.13
REMARK 500 5 THR A 18 105.09 -59.79
REMARK 500 5 ASP A 38 35.90 -96.37
REMARK 500 5 LEU A 100 54.08 -106.65
REMARK 500 5 ASN A 101 33.59 -98.18
REMARK 500 5 SER A 103 34.25 -98.26
REMARK 500 5 SER A 107 102.45 60.33
REMARK 500 6 SER A 5 -46.32 -164.47
REMARK 500 6 SER A 6 -47.33 -146.15
REMARK 500 6 LYS A 12 30.49 -98.05
REMARK 500 6 PHE A 13 30.42 -155.89
REMARK 500 6 ASP A 14 -53.38 -157.90
REMARK 500 6 PRO A 17 -169.23 -68.96
REMARK 500 6 ASP A 38 42.38 -94.85
REMARK 500
REMARK 500 THIS ENTRY HAS 136 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 650
REMARK 650 HELIX
REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: MMT007011339.1 RELATED DB: TARGETDB
DBREF 1V64 A 8 102 UNP P25976 UBF1_MOUSE 288 382
SEQADV 1V64 GLY A 1 UNP P25976 CLONING ARTIFACT
SEQADV 1V64 SER A 2 UNP P25976 CLONING ARTIFACT
SEQADV 1V64 SER A 3 UNP P25976 CLONING ARTIFACT
SEQADV 1V64 GLY A 4 UNP P25976 CLONING ARTIFACT
SEQADV 1V64 SER A 5 UNP P25976 CLONING ARTIFACT
SEQADV 1V64 SER A 6 UNP P25976 CLONING ARTIFACT
SEQADV 1V64 GLY A 7 UNP P25976 CLONING ARTIFACT
SEQADV 1V64 SER A 103 UNP P25976 CLONING ARTIFACT
SEQADV 1V64 GLY A 104 UNP P25976 CLONING ARTIFACT
SEQADV 1V64 PRO A 105 UNP P25976 CLONING ARTIFACT
SEQADV 1V64 SER A 106 UNP P25976 CLONING ARTIFACT
SEQADV 1V64 SER A 107 UNP P25976 CLONING ARTIFACT
SEQADV 1V64 GLY A 108 UNP P25976 CLONING ARTIFACT
SEQRES 1 A 108 GLY SER SER GLY SER SER GLY GLN LEU LYS ASP LYS PHE
SEQRES 2 A 108 ASP GLY ARG PRO THR LYS PRO PRO PRO ASN SER TYR SER
SEQRES 3 A 108 LEU TYR CYS ALA GLU LEU MET ALA ASN MET LYS ASP VAL
SEQRES 4 A 108 PRO SER THR GLU ARG MET VAL LEU CYS SER GLN GLN TRP
SEQRES 5 A 108 LYS LEU LEU SER GLN LYS GLU LYS ASP ALA TYR HIS LYS
SEQRES 6 A 108 LYS CYS ASP GLN LYS LYS LYS ASP TYR GLU VAL GLU LEU
SEQRES 7 A 108 LEU ARG PHE LEU GLU SER LEU PRO GLU GLU GLU GLN GLN
SEQRES 8 A 108 ARG VAL LEU GLY GLU GLU LYS MET LEU ASN ILE SER GLY
SEQRES 9 A 108 PRO SER SER GLY
HELIX 1 1 SER A 24 MET A 36 1 13
HELIX 2 2 SER A 41 LEU A 55 1 15
HELIX 3 3 GLN A 57 LEU A 85 1 29
HELIX 4 4 GLU A 87 GLY A 95 1 9
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - r 2 2 Bytes