Header list of 1v63.pdb file
Complete list - r 2 2 Bytes
HEADER DNA BINDING PROTEIN 27-NOV-03 1V63 TITLE SOLUTION STRUCTURE OF THE 6TH HMG BOX OF MOUSE UBF1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOLAR TRANSCRIPTION FACTOR 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HMG BOX DOMAIN; COMPND 5 SYNONYM: UPSTREAM BINDING FACTOR 1, UBF-1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RIKEN CDNA 1300010N03; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P030107-54; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS TRANSCRIPTION FACTOR, DNA BINDING, STRUCTURAL GENOMICS, RIKEN KEYWDS 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, DNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.SATO,K.SAITO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 02-MAR-22 1V63 1 REMARK SEQADV REVDAT 2 24-FEB-09 1V63 1 VERSN REVDAT 1 27-MAY-04 1V63 0 JRNL AUTH M.SATO,K.SAITO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE 6TH HMG BOX OF MOUSE UBF1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, CYANA 1.0.7 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUENTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1V63 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-NOV-03. REMARK 100 THE DEPOSITION ID IS D_1000006252. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.2MM HMG BOX DOMAIN U-15N,13C; REMARK 210 20MM PHOSPHATE BUFFER NA; 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20020425, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.816, CYANA 1.0.7 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS,STRUCTURES REMARK 210 WITH THE LOWEST ENERGY,TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU A 36 H GLU A 40 1.50 REMARK 500 O LEU A 59 H GLN A 63 1.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 162.99 178.79 REMARK 500 1 SER A 5 -54.27 -145.41 REMARK 500 1 LYS A 10 101.53 -41.81 REMARK 500 1 MET A 13 -63.94 -124.11 REMARK 500 1 ILE A 48 171.76 -46.76 REMARK 500 1 GLN A 52 -72.19 -41.57 REMARK 500 1 SER A 79 178.80 -52.50 REMARK 500 1 ARG A 94 -169.68 44.99 REMARK 500 2 SER A 2 162.09 62.46 REMARK 500 2 SER A 3 81.71 -179.35 REMARK 500 2 SER A 5 -54.53 -161.79 REMARK 500 2 SER A 6 159.27 61.37 REMARK 500 2 PRO A 12 -164.99 -75.06 REMARK 500 2 ASN A 14 -80.40 61.54 REMARK 500 2 LYS A 35 -31.34 -38.28 REMARK 500 2 ILE A 48 162.20 -41.99 REMARK 500 2 GLN A 52 -72.10 -42.53 REMARK 500 2 ALA A 60 -73.11 -58.65 REMARK 500 2 SER A 79 179.41 -49.88 REMARK 500 2 LYS A 93 -69.93 174.77 REMARK 500 2 SER A 96 85.51 -179.02 REMARK 500 2 SER A 100 159.74 63.74 REMARK 500 3 SER A 2 135.21 -173.17 REMARK 500 3 SER A 6 145.16 -171.95 REMARK 500 3 LYS A 10 109.55 -57.07 REMARK 500 3 ILE A 48 -177.87 -51.44 REMARK 500 3 SER A 79 178.95 -58.92 REMARK 500 3 ASN A 92 59.39 -92.18 REMARK 500 3 LYS A 93 -57.88 -150.05 REMARK 500 3 LYS A 95 174.01 58.70 REMARK 500 4 SER A 6 163.09 66.90 REMARK 500 4 PRO A 12 -168.22 -74.99 REMARK 500 4 ASN A 14 -73.46 66.53 REMARK 500 4 LYS A 35 -29.53 -39.86 REMARK 500 4 ILE A 48 179.36 -50.12 REMARK 500 4 SER A 79 179.60 -50.95 REMARK 500 4 LYS A 93 -52.63 -154.15 REMARK 500 4 LYS A 95 -68.39 -159.03 REMARK 500 4 SER A 100 144.08 64.25 REMARK 500 5 SER A 2 133.87 -172.52 REMARK 500 5 SER A 3 140.86 -176.08 REMARK 500 5 SER A 6 159.21 179.71 REMARK 500 5 LYS A 10 107.67 -52.75 REMARK 500 5 ASN A 14 -58.31 74.77 REMARK 500 5 LYS A 35 -70.07 -33.75 REMARK 500 5 ILE A 48 164.82 -42.94 REMARK 500 5 GLN A 52 -72.01 -65.39 REMARK 500 5 SER A 79 178.21 -55.34 REMARK 500 5 ARG A 94 -175.11 47.46 REMARK 500 5 SER A 96 -51.88 -144.83 REMARK 500 REMARK 500 THIS ENTRY HAS 202 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMT007011339.3 RELATED DB: TARGETDB DBREF 1V63 A 8 95 UNP P25976 UBF1_MOUSE 567 654 SEQADV 1V63 GLY A 1 UNP P25976 CLONING ARTIFACT SEQADV 1V63 SER A 2 UNP P25976 CLONING ARTIFACT SEQADV 1V63 SER A 3 UNP P25976 CLONING ARTIFACT SEQADV 1V63 GLY A 4 UNP P25976 CLONING ARTIFACT SEQADV 1V63 SER A 5 UNP P25976 CLONING ARTIFACT SEQADV 1V63 SER A 6 UNP P25976 CLONING ARTIFACT SEQADV 1V63 GLY A 7 UNP P25976 CLONING ARTIFACT SEQADV 1V63 SER A 96 UNP P25976 CLONING ARTIFACT SEQADV 1V63 GLY A 97 UNP P25976 CLONING ARTIFACT SEQADV 1V63 PRO A 98 UNP P25976 CLONING ARTIFACT SEQADV 1V63 SER A 99 UNP P25976 CLONING ARTIFACT SEQADV 1V63 SER A 100 UNP P25976 CLONING ARTIFACT SEQADV 1V63 GLY A 101 UNP P25976 CLONING ARTIFACT SEQRES 1 A 101 GLY SER SER GLY SER SER GLY PRO LYS LYS PRO PRO MET SEQRES 2 A 101 ASN GLY TYR GLN LYS PHE SER GLN GLU LEU LEU SER ASN SEQRES 3 A 101 GLY GLU LEU ASN HIS LEU PRO LEU LYS GLU ARG MET VAL SEQRES 4 A 101 GLU ILE GLY SER ARG TRP GLN ARG ILE SER GLN SER GLN SEQRES 5 A 101 LYS GLU HIS TYR LYS LYS LEU ALA GLU GLU GLN GLN ARG SEQRES 6 A 101 GLN TYR LYS VAL HIS LEU ASP LEU TRP VAL LYS SER LEU SEQRES 7 A 101 SER PRO GLN ASP ARG ALA ALA TYR LYS GLU TYR ILE SER SEQRES 8 A 101 ASN LYS ARG LYS SER GLY PRO SER SER GLY HELIX 1 1 GLY A 15 GLY A 27 1 13 HELIX 2 2 PRO A 33 GLN A 46 1 14 HELIX 3 3 SER A 49 LEU A 78 1 30 HELIX 4 4 GLN A 81 LYS A 93 1 13 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1
Complete list - r 2 2 Bytes