Header list of 1v62.pdb file
Complete list - r 2 2 Bytes
HEADER PROTEIN BINDING 27-NOV-03 1V62
TITLE SOLUTION STRUCTURE OF THE 3RD PDZ DOMAIN OF GRIP2
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: KIAA1719 PROTEIN;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: PDZ DOMAIN;
COMPND 5 SYNONYM: GLUTAMATE RECEPTOR INTERACTING PROTEIN 2;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: KAZUSA CDNA PF00330S1;
SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P030203-11;
SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS STRUCTURAL GENOMICS, SYNAPTIC TRANSMISSION, RIKEN STRUCTURAL
KEYWDS 2 GENOMICS/PROTEOMICS INITIATIVE, RSGI, PROTEIN BINDING
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR K.SAITO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN STRUCTURAL
AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 3 02-MAR-22 1V62 1 REMARK SEQADV
REVDAT 2 24-FEB-09 1V62 1 VERSN
REVDAT 1 27-MAY-04 1V62 0
JRNL AUTH K.SAITO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA
JRNL TITL SOLUTION STRUCTURE OF THE 3RD PDZ DOMAIN OF GRIP2
JRNL REF TO BE PUBLISHED
JRNL REFN
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : CNS 1.1
REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE
REMARK 3 -KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ,RICE,
REMARK 3 SIMONSON,WARREN
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 1V62 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-NOV-03.
REMARK 100 THE DEPOSITION ID IS D_1000006251.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 298
REMARK 210 PH : 6.0
REMARK 210 IONIC STRENGTH : 220MM
REMARK 210 PRESSURE : AMBIENT
REMARK 210 SAMPLE CONTENTS : 1MM PDZ DOMAIN U-15N,13C; 20MM
REMARK 210 SODIUM PHOSPHATE BUFFER PH 6.0;
REMARK 210 200MM NACL; 1MM D-DTT; 0.02%
REMARK 210 NAN3; 10% D2O
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C
REMARK 210 -SEPARATED_NOESY
REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ
REMARK 210 SPECTROMETER MODEL : AVANCE
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : XWINNMR 2.6, NMRPIPE 20020425,
REMARK 210 NMRVIEW 5, CNS 1.1
REMARK 210 METHOD USED : NULL
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 100
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20
REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST
REMARK 210 ENERGY
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 SER A 3 -179.47 60.32
REMARK 500 1 SER A 5 78.40 60.35
REMARK 500 1 VAL A 10 105.53 62.73
REMARK 500 1 SER A 14 -48.92 -134.57
REMARK 500 1 VAL A 22 86.59 -69.99
REMARK 500 1 LEU A 38 -75.68 -154.18
REMARK 500 1 ARG A 39 -57.98 -153.41
REMARK 500 1 MET A 75 37.58 -97.71
REMARK 500 1 GLU A 92 -59.13 -143.21
REMARK 500 1 PRO A 100 91.51 -50.27
REMARK 500 1 SER A 116 -48.23 -161.41
REMARK 500 2 SER A 14 92.61 -174.89
REMARK 500 2 VAL A 22 85.14 -68.71
REMARK 500 2 ARG A 39 -49.97 -154.40
REMARK 500 2 ASN A 40 30.07 -146.09
REMARK 500 2 LYS A 41 134.10 -171.74
REMARK 500 2 MET A 75 36.55 -98.41
REMARK 500 2 SER A 91 -75.14 -85.23
REMARK 500 2 PRO A 100 95.54 -52.62
REMARK 500 2 SER A 104 -79.96 -118.53
REMARK 500 2 LEU A 108 140.04 63.66
REMARK 500 2 ARG A 109 159.63 59.99
REMARK 500 2 PRO A 110 -174.45 -52.90
REMARK 500 2 SER A 111 30.94 -142.05
REMARK 500 2 SER A 112 169.77 59.51
REMARK 500 3 SER A 3 130.02 -173.52
REMARK 500 3 SER A 5 -65.86 69.24
REMARK 500 3 ALA A 13 30.85 -143.30
REMARK 500 3 VAL A 22 85.91 -61.26
REMARK 500 3 LEU A 38 -62.59 -148.46
REMARK 500 3 ARG A 39 -44.85 -162.42
REMARK 500 3 ASN A 40 30.93 -154.50
REMARK 500 3 LYS A 41 -169.42 -162.28
REMARK 500 3 MET A 75 30.96 -98.23
REMARK 500 3 GLU A 92 -48.41 -159.20
REMARK 500 3 PRO A 100 99.75 -49.48
REMARK 500 3 GLN A 105 31.63 -158.50
REMARK 500 3 LEU A 108 -69.82 -152.94
REMARK 500 3 PRO A 110 63.31 -69.61
REMARK 500 3 SER A 111 33.41 -143.34
REMARK 500 3 SER A 115 -47.43 -139.87
REMARK 500 3 SER A 116 33.52 -98.90
REMARK 500 4 SER A 3 -45.01 -162.84
REMARK 500 4 THR A 9 31.91 -154.64
REMARK 500 4 ASN A 12 31.57 -152.04
REMARK 500 4 PRO A 16 174.27 -53.15
REMARK 500 4 LEU A 38 -65.24 -147.22
REMARK 500 4 ARG A 39 -51.46 -152.38
REMARK 500 4 ASN A 40 29.13 -148.16
REMARK 500 4 PRO A 63 108.75 -53.67
REMARK 500
REMARK 500 THIS ENTRY HAS 310 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: HSK002101691.1 RELATED DB: TARGETDB
DBREF 1V62 A 8 111 UNP Q9C0E4 GRIP2_HUMAN 245 348
SEQADV 1V62 GLY A 1 UNP Q9C0E4 CLONING ARTIFACT
SEQADV 1V62 SER A 2 UNP Q9C0E4 CLONING ARTIFACT
SEQADV 1V62 SER A 3 UNP Q9C0E4 CLONING ARTIFACT
SEQADV 1V62 GLY A 4 UNP Q9C0E4 CLONING ARTIFACT
SEQADV 1V62 SER A 5 UNP Q9C0E4 CLONING ARTIFACT
SEQADV 1V62 SER A 6 UNP Q9C0E4 CLONING ARTIFACT
SEQADV 1V62 GLY A 7 UNP Q9C0E4 CLONING ARTIFACT
SEQADV 1V62 SER A 112 UNP Q9C0E4 CLONING ARTIFACT
SEQADV 1V62 GLY A 113 UNP Q9C0E4 CLONING ARTIFACT
SEQADV 1V62 PRO A 114 UNP Q9C0E4 CLONING ARTIFACT
SEQADV 1V62 SER A 115 UNP Q9C0E4 CLONING ARTIFACT
SEQADV 1V62 SER A 116 UNP Q9C0E4 CLONING ARTIFACT
SEQADV 1V62 GLY A 117 UNP Q9C0E4 CLONING ARTIFACT
SEQRES 1 A 117 GLY SER SER GLY SER SER GLY ASP THR VAL ALA ASN ALA
SEQRES 2 A 117 SER GLY PRO LEU MET VAL GLU ILE VAL LYS THR PRO GLY
SEQRES 3 A 117 SER ALA LEU GLY ILE SER LEU THR THR THR SER LEU ARG
SEQRES 4 A 117 ASN LYS SER VAL ILE THR ILE ASP ARG ILE LYS PRO ALA
SEQRES 5 A 117 SER VAL VAL ASP ARG SER GLY ALA LEU HIS PRO GLY ASP
SEQRES 6 A 117 HIS ILE LEU SER ILE ASP GLY THR SER MET GLU HIS CYS
SEQRES 7 A 117 SER LEU LEU GLU ALA THR LYS LEU LEU ALA SER ILE SER
SEQRES 8 A 117 GLU LYS VAL ARG LEU GLU ILE LEU PRO VAL PRO GLN SER
SEQRES 9 A 117 GLN ARG PRO LEU ARG PRO SER SER GLY PRO SER SER GLY
HELIX 1 1 SER A 53 GLY A 59 1 7
HELIX 2 2 SER A 79 SER A 89 1 11
SHEET 1 A 4 LEU A 17 VAL A 22 0
SHEET 2 A 4 LYS A 93 ILE A 98 -1 O LEU A 96 N VAL A 19
SHEET 3 A 4 ILE A 67 ILE A 70 -1 N SER A 69 O GLU A 97
SHEET 4 A 4 THR A 73 SER A 74 -1 O THR A 73 N ILE A 70
SHEET 1 B 2 SER A 32 THR A 36 0
SHEET 2 B 2 VAL A 43 ARG A 48 -1 O THR A 45 N THR A 34
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - r 2 2 Bytes