Header list of 1v5p.pdb file
Complete list - r 2 2 Bytes
HEADER SIGNALING PROTEIN 25-NOV-03 1V5P
TITLE SOLUTION STRUCTURE OF THE N-TERMINAL PLECKSTRIN HOMOLOGY DOMAIN OF
TITLE 2 TAPP2 FROM MOUSE
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING, FAMILY A;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: THE PLECKSTRIN HOMOLOGY DOMAIN;
COMPND 5 SYNONYM: TANDEM PH DOMAIN CONTAINING PROTEIN-2, TAPP2;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS;
SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE;
SOURCE 4 ORGANISM_TAXID: 10090;
SOURCE 5 GENE: RIKEN CDNA 6430512N22;
SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P030212-66;
SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS TAPP2, THE PLECKSTRIN HOMOLOGY DOMAIN, STRUCTURAL GENOMICS, RIKEN
KEYWDS 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, SIGNALING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR H.LI,F.HAYASHI,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN STRUCTURAL
AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 3 02-MAR-22 1V5P 1 REMARK SEQADV
REVDAT 2 24-FEB-09 1V5P 1 VERSN
REVDAT 1 25-MAY-04 1V5P 0
JRNL AUTH H.LI,F.HAYASHI,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA
JRNL TITL SOLUTION STRUCTURE OF THE N-TERMINAL PLECKSTRIN HOMOLOGY
JRNL TITL 2 DOMAIN OF TAPP2 FROM MOUSE
JRNL REF TO BE PUBLISHED
JRNL REFN
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : VNMR 6.1C, CYANA 1.0.7
REMARK 3 AUTHORS : VARIAN (VNMR), GUENTERT, P. (CYANA)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 1V5P COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-NOV-03.
REMARK 100 THE DEPOSITION ID IS D_1000006238.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 298
REMARK 210 PH : 6.0
REMARK 210 IONIC STRENGTH : 120MM
REMARK 210 PRESSURE : AMBIENT
REMARK 210 SAMPLE CONTENTS : 1.08MM PLECKSTRIN HOMOLOGY
REMARK 210 DOMAIN U-13C, 15N; 20MM PINA(6.0)
REMARK 210 ; 100MM NACL; 1MM D-DTT; 0.02%
REMARK 210 NAN3; 90% H2O, 10% D2O
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N
REMARK 210 -SEPARATED_NOESY
REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ
REMARK 210 SPECTROMETER MODEL : INOVA
REMARK 210 SPECTROMETER MANUFACTURER : VARIAN
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NMRPIPE 20020425, NMRVIEW 5.0.4,
REMARK 210 KUJIRA 0.854, CYANA 1.0.7
REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 100
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20
REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST
REMARK 210 RESTRAINT VIOLATIONS, TARGET
REMARK 210 FUNCTION
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 H SER A 72 O ASN A 92 1.50
REMARK 500 O TRP A 111 H LEU A 115 1.51
REMARK 500 H TYR A 36 O TYR A 49 1.51
REMARK 500 O ASP A 110 H ALA A 114 1.52
REMARK 500 O VAL A 74 HD22 ASN A 116 1.57
REMARK 500 H LEU A 46 O LEU A 66 1.60
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 SER A 2 112.90 58.61
REMARK 500 1 VAL A 11 152.44 66.88
REMARK 500 1 ASN A 15 128.91 64.73
REMARK 500 1 GLU A 27 47.24 -107.65
REMARK 500 1 ASN A 28 129.63 168.91
REMARK 500 1 SER A 29 79.37 -101.95
REMARK 500 1 LEU A 56 -171.45 -69.47
REMARK 500 1 ALA A 77 -175.45 -52.54
REMARK 500 1 LYS A 82 81.09 -152.21
REMARK 500 1 ALA A 93 -143.92 -123.17
REMARK 500 1 SER A 95 31.92 -160.18
REMARK 500 1 SER A 121 33.13 39.23
REMARK 500 2 SER A 6 -54.44 -124.16
REMARK 500 2 VAL A 11 90.36 40.90
REMARK 500 2 ASN A 15 -8.58 83.64
REMARK 500 2 ARG A 16 145.16 160.37
REMARK 500 2 SER A 29 88.22 40.06
REMARK 500 2 MET A 50 -33.67 -36.80
REMARK 500 2 LEU A 56 -169.99 -67.19
REMARK 500 2 ALA A 77 177.85 -57.25
REMARK 500 2 PRO A 86 -71.87 -74.95
REMARK 500 2 ALA A 93 -151.26 -124.51
REMARK 500 2 LEU A 94 -70.88 -39.70
REMARK 500 2 SER A 95 39.89 -153.76
REMARK 500 2 ASP A 104 -161.75 -118.14
REMARK 500 2 LEU A 108 -71.06 -63.43
REMARK 500 2 LYS A 120 82.19 38.50
REMARK 500 3 SER A 2 -78.17 64.08
REMARK 500 3 SER A 6 135.52 -177.00
REMARK 500 3 MET A 8 63.93 -174.19
REMARK 500 3 TYR A 10 -145.82 -130.58
REMARK 500 3 VAL A 11 113.75 -38.41
REMARK 500 3 GLN A 14 -36.02 -36.61
REMARK 500 3 ASN A 15 127.45 63.44
REMARK 500 3 SER A 29 87.85 41.39
REMARK 500 3 LEU A 56 -169.59 -67.27
REMARK 500 3 ALA A 60 157.18 -40.67
REMARK 500 3 PHE A 87 77.27 -101.78
REMARK 500 3 ALA A 93 -146.05 -125.60
REMARK 500 3 LEU A 94 -70.84 -39.24
REMARK 500 3 SER A 95 24.86 -153.92
REMARK 500 3 ASP A 104 -164.19 -123.05
REMARK 500 3 GLN A 117 -60.93 -96.79
REMARK 500 3 SER A 124 -57.31 -158.98
REMARK 500 3 SER A 125 86.94 43.01
REMARK 500 4 SER A 2 -57.83 -123.57
REMARK 500 4 SER A 3 132.28 65.11
REMARK 500 4 SER A 6 -73.67 -41.65
REMARK 500 4 VAL A 11 162.94 60.81
REMARK 500 4 GLN A 14 33.79 -93.79
REMARK 500
REMARK 500 THIS ENTRY HAS 326 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: MMT007020221.1 RELATED DB: TARGETDB
DBREF 1V5P A 8 120 GB 13752587 NP_112547 1 113
SEQADV 1V5P GLY A 1 GB 13752587 CLONING ARTIFACT
SEQADV 1V5P SER A 2 GB 13752587 CLONING ARTIFACT
SEQADV 1V5P SER A 3 GB 13752587 CLONING ARTIFACT
SEQADV 1V5P GLY A 4 GB 13752587 CLONING ARTIFACT
SEQADV 1V5P SER A 5 GB 13752587 CLONING ARTIFACT
SEQADV 1V5P SER A 6 GB 13752587 CLONING ARTIFACT
SEQADV 1V5P GLY A 7 GB 13752587 CLONING ARTIFACT
SEQADV 1V5P SER A 121 GB 13752587 CLONING ARTIFACT
SEQADV 1V5P GLY A 122 GB 13752587 CLONING ARTIFACT
SEQADV 1V5P PRO A 123 GB 13752587 CLONING ARTIFACT
SEQADV 1V5P SER A 124 GB 13752587 CLONING ARTIFACT
SEQADV 1V5P SER A 125 GB 13752587 CLONING ARTIFACT
SEQADV 1V5P GLY A 126 GB 13752587 CLONING ARTIFACT
SEQRES 1 A 126 GLY SER SER GLY SER SER GLY MET PRO TYR VAL ASP ARG
SEQRES 2 A 126 GLN ASN ARG ILE CYS GLY PHE LEU ASP ILE GLU ASP ASN
SEQRES 3 A 126 GLU ASN SER GLY LYS PHE LEU ARG ARG TYR PHE ILE LEU
SEQRES 4 A 126 ASP THR GLN ALA ASN CYS LEU LEU TRP TYR MET ASP ASN
SEQRES 5 A 126 PRO GLN ASN LEU ALA VAL GLY ALA GLY ALA VAL GLY SER
SEQRES 6 A 126 LEU GLN LEU THR TYR ILE SER LYS VAL SER ILE ALA THR
SEQRES 7 A 126 PRO LYS GLN LYS PRO LYS THR PRO PHE CYS PHE VAL ILE
SEQRES 8 A 126 ASN ALA LEU SER GLN ARG TYR PHE LEU GLN ALA ASN ASP
SEQRES 9 A 126 GLN LYS ASP LEU LYS ASP TRP VAL GLU ALA LEU ASN GLN
SEQRES 10 A 126 ALA SER LYS SER GLY PRO SER SER GLY
HELIX 1 1 GLN A 105 ALA A 118 1 14
SHEET 1 A 7 ILE A 17 GLU A 24 0
SHEET 2 A 7 PHE A 32 ASP A 40 -1 O LEU A 39 N ILE A 17
SHEET 3 A 7 CYS A 45 TYR A 49 -1 O TYR A 49 N TYR A 36
SHEET 4 A 7 GLY A 64 GLN A 67 -1 O LEU A 66 N LEU A 46
SHEET 5 A 7 LYS A 73 ILE A 76 0
SHEET 6 A 7 CYS A 88 ASN A 92 -1 O ASN A 92 N LYS A 73
SHEET 7 A 7 ARG A 97 GLN A 101 -1 O TYR A 98 N ILE A 91
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - r 2 2 Bytes