Header list of 1v5o.pdb file
Complete list - r 2 2 Bytes
HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 25-NOV-03 1V5O
TITLE SOLUTION STRUCTURE OF THE UBIQUITIN-LIKE DOMAIN FROM MOUSE
TITLE 2 HYPOTHETICAL 1700011N24RIK PROTEIN
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: 1700011N24RIK PROTEIN;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: UBIQUITIN-LIKE DOMAIN;
COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS;
SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE;
SOURCE 4 ORGANISM_TAXID: 10090;
SOURCE 5 GENE: RIKEN CDNA 1700011N24;
SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P030414-59;
SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS HYPOTHETICAL PROTEIN, UBIQUITIN-LIKE FOLD, STRUCTURAL GENOMICS, RIKEN
KEYWDS 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, UNKNOWN FUNCTION
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR C.ZHAO,T.KIGAWA,T.TOMIZAWA,S.KOSHIBA,M.INOUE,S.YOKOYAMA,RIKEN
AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 3 02-MAR-22 1V5O 1 REMARK SEQADV
REVDAT 2 24-FEB-09 1V5O 1 VERSN
REVDAT 1 25-MAY-04 1V5O 0
JRNL AUTH C.ZHAO,T.KIGAWA,T.TOMIZAWA,S.KOSHIBA,M.INOUE,S.YOKOYAMA
JRNL TITL SOLUTION STRUCTURE OF THE UBIQUITIN-LIKE DOMAIN FROM MOUSE
JRNL TITL 2 HYPOTHETICAL 1700011N24RIK PROTEIN
JRNL REF TO BE PUBLISHED
JRNL REFN
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : XWINNMR 2.6, CYANA 1.0.7
REMARK 3 AUTHORS : BRUKER (XWINNMR), GUENTERT, P. (CYANA)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 1V5O COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-NOV-03.
REMARK 100 THE DEPOSITION ID IS D_1000006237.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 298.0
REMARK 210 PH : 6.0
REMARK 210 IONIC STRENGTH : 120MM
REMARK 210 PRESSURE : AMBIENT
REMARK 210 SAMPLE CONTENTS : 1.17MM PROTEIN U-15N, 13C; 20MM
REMARK 210 PHOSPHATE NA (PH6.0); 100MM NACL;
REMARK 210 1MM D-DTT; 0.02% NAN3; 90% H2O;
REMARK 210 10% D2O
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N
REMARK 210 -SEPARATED_NOESY
REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ
REMARK 210 SPECTROMETER MODEL : AVANCE
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NMRPIPE 20020425, NMRVIEW 5.0.4,
REMARK 210 KUJIRA 0.860, CYANA 1.0.7
REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 100
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20
REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST
REMARK 210 RESTRAINT VIOLATIONS, TARGET
REMARK 210 FUNCTION
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 HH TYR A 56 O GLY A 72 1.53
REMARK 500 O TYR A 13 H LEU A 81 1.54
REMARK 500 H LYS A 74 OD2 ASP A 77 1.56
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 SER A 5 -56.39 -173.31
REMARK 500 1 VAL A 15 -98.21 -121.43
REMARK 500 1 ARG A 16 -90.53 -37.70
REMARK 500 1 ASP A 18 39.61 71.44
REMARK 500 1 LEU A 19 84.85 78.04
REMARK 500 1 THR A 20 -63.05 -165.64
REMARK 500 1 GLU A 21 114.25 58.26
REMARK 500 1 GLU A 33 150.80 -48.51
REMARK 500 1 GLU A 58 -13.91 87.83
REMARK 500 1 THR A 62 56.64 -114.14
REMARK 500 1 ASP A 63 113.26 -160.24
REMARK 500 1 ASN A 86 22.52 -148.73
REMARK 500 1 LEU A 89 69.14 -101.42
REMARK 500 1 THR A 91 143.82 63.20
REMARK 500 1 ARG A 94 97.97 -177.37
REMARK 500 1 SER A 101 110.92 60.08
REMARK 500 2 SER A 3 -55.88 -128.03
REMARK 500 2 SER A 5 -65.94 76.35
REMARK 500 2 VAL A 15 -124.05 -111.86
REMARK 500 2 ARG A 16 -72.94 -36.54
REMARK 500 2 ARG A 17 18.98 54.36
REMARK 500 2 ASP A 18 34.33 80.70
REMARK 500 2 LEU A 19 81.79 78.75
REMARK 500 2 THR A 20 -57.23 -164.01
REMARK 500 2 GLU A 21 78.71 45.46
REMARK 500 2 ALA A 49 -31.07 -39.89
REMARK 500 2 MET A 57 -55.49 75.03
REMARK 500 2 GLU A 58 -34.07 175.39
REMARK 500 2 VAL A 87 119.30 61.41
REMARK 500 2 SER A 97 161.98 67.72
REMARK 500 2 SER A 100 90.45 40.47
REMARK 500 3 SER A 2 121.91 62.27
REMARK 500 3 SER A 5 -56.50 -163.20
REMARK 500 3 VAL A 15 -117.58 -114.43
REMARK 500 3 ARG A 16 -75.61 -38.02
REMARK 500 3 ASP A 18 44.17 72.42
REMARK 500 3 LEU A 19 85.31 72.02
REMARK 500 3 THR A 20 -56.14 -165.00
REMARK 500 3 GLU A 33 150.16 -49.70
REMARK 500 3 MET A 57 -72.99 68.39
REMARK 500 3 GLU A 58 33.95 -171.94
REMARK 500 3 THR A 62 60.16 -109.58
REMARK 500 3 ASP A 85 159.64 58.20
REMARK 500 3 VAL A 87 -107.59 -130.15
REMARK 500 3 LEU A 89 90.58 53.66
REMARK 500 4 SER A 2 92.17 64.29
REMARK 500 4 SER A 3 -56.18 179.78
REMARK 500 4 SER A 6 164.69 57.39
REMARK 500 4 VAL A 15 -98.96 -124.84
REMARK 500 4 ARG A 16 -90.63 -37.03
REMARK 500
REMARK 500 THIS ENTRY HAS 303 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: MMK001003323.1 RELATED DB: TARGETDB
DBREF 1V5O A 8 96 GB 12838695 BAB24297 1 89
SEQADV 1V5O GLY A 1 GB 12838695 CLONING ARTIFACT
SEQADV 1V5O SER A 2 GB 12838695 CLONING ARTIFACT
SEQADV 1V5O SER A 3 GB 12838695 CLONING ARTIFACT
SEQADV 1V5O GLY A 4 GB 12838695 CLONING ARTIFACT
SEQADV 1V5O SER A 5 GB 12838695 CLONING ARTIFACT
SEQADV 1V5O SER A 6 GB 12838695 CLONING ARTIFACT
SEQADV 1V5O GLY A 7 GB 12838695 CLONING ARTIFACT
SEQADV 1V5O SER A 97 GB 12838695 CLONING ARTIFACT
SEQADV 1V5O GLY A 98 GB 12838695 CLONING ARTIFACT
SEQADV 1V5O PRO A 99 GB 12838695 CLONING ARTIFACT
SEQADV 1V5O SER A 100 GB 12838695 CLONING ARTIFACT
SEQADV 1V5O SER A 101 GB 12838695 CLONING ARTIFACT
SEQADV 1V5O GLY A 102 GB 12838695 CLONING ARTIFACT
SEQRES 1 A 102 GLY SER SER GLY SER SER GLY MET LEU ILE THR VAL TYR
SEQRES 2 A 102 CYS VAL ARG ARG ASP LEU THR GLU VAL THR PHE SER LEU
SEQRES 3 A 102 GLN VAL ASN PRO ASP PHE GLU LEU SER ASN PHE ARG VAL
SEQRES 4 A 102 LEU CYS GLU LEU GLU SER GLY VAL PRO ALA GLU GLU ALA
SEQRES 5 A 102 GLN ILE VAL TYR MET GLU GLN LEU LEU THR ASP ASP HIS
SEQRES 6 A 102 CYS SER LEU GLY SER TYR GLY LEU LYS ASP GLY ASP MET
SEQRES 7 A 102 VAL VAL LEU LEU GLN LYS ASP ASN VAL GLY LEU ARG THR
SEQRES 8 A 102 PRO GLY ARG THR PRO SER GLY PRO SER SER GLY
HELIX 1 1 LEU A 34 SER A 45 1 12
HELIX 2 2 PRO A 48 ALA A 52 5 5
HELIX 3 3 LEU A 68 GLY A 72 1 5
SHEET 1 A 3 THR A 23 VAL A 28 0
SHEET 2 A 3 MET A 8 CYS A 14 -1 N ILE A 10 O LEU A 26
SHEET 3 A 3 ASP A 77 LEU A 81 1 O LEU A 81 N TYR A 13
SHEET 1 B 2 ILE A 54 TYR A 56 0
SHEET 2 B 2 GLN A 59 LEU A 61 -1 O LEU A 61 N ILE A 54
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - r 2 2 Bytes