Header list of 1v2y.pdb file
Complete list - r 2 2 Bytes
HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 17-OCT-03 1V2Y
TITLE SOLUTION STRUCTURE OF MOUSE HYPOTHETICAL GENE (RIKEN CDNA 3300001G02)
TITLE 2 PRODUCT HOMOLOGOUS TO UBIQUITIN FOLD
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: 3300001G02RIK PROTEIN;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: UBIQUITIN-LIKE FOLD;
COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS;
SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE;
SOURCE 4 ORGANISM_TAXID: 10090;
SOURCE 5 GENE: RIKEN CDNA 3300001G02;
SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P030224-02;
SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS HYPOTHETICAL PROTEIN, UBIQUITIN-LIKE FOLD, STRUCTURAL GENOMICS, RIKEN
KEYWDS 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, UNKNOWN FUNCTION
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR C.ZHAO,T.KIGAWA,T.TOMIZAWA,S.KOSHIBA,S.YOKOYAMA,RIKEN STRUCTURAL
AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 3 02-MAR-22 1V2Y 1 REMARK SEQADV
REVDAT 2 24-FEB-09 1V2Y 1 VERSN
REVDAT 1 17-APR-04 1V2Y 0
JRNL AUTH C.ZHAO,T.KIGAWA,T.TOMIZAWA,S.KOSHIBA,S.YOKOYAMA
JRNL TITL SOLUTION STRUCTURE OF MOUSE HYPOTHETICAL GENE (RIKEN CDNA
JRNL TITL 2 3300001G02) PRODUCT HOMOLOGOUS TO UBIQUITIN FOLD
JRNL REF TO BE PUBLISHED
JRNL REFN
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : XWINNMR 2.6, CYANA 1.0.7
REMARK 3 AUTHORS : BRUKER (XWINNMR), GUENTERT, P. (CYANA)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 1V2Y COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-OCT-03.
REMARK 100 THE DEPOSITION ID IS D_1000006140.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 298.0
REMARK 210 PH : 6.0
REMARK 210 IONIC STRENGTH : 120MM
REMARK 210 PRESSURE : AMBIENT
REMARK 210 SAMPLE CONTENTS : 0.55MM PROTEIN U-15N, 13C; 20MM
REMARK 210 PHOSPHATE BUFFER NA (PH6.0);
REMARK 210 100MM NACL; 1MM D-DTT; 0.02%
REMARK 210 NAN3; 90% H2O; 10% D2O
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C
REMARK 210 -SEPARATED_NOESY
REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ
REMARK 210 SPECTROMETER MODEL : AVANCE
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NMRPIPE 20020425, NMRVIEW 5.0.4,
REMARK 210 KUJIRA 0.860, CYANA 1.0.7
REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS,
REMARK 210 RESTRAINED MOLECULAR DYNAMICS
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 100
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20
REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST
REMARK 210 RESTRAINT VIOLATIONS,TARGET
REMARK 210 FUNCTION
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 H THR A 66 O SER A 91 1.52
REMARK 500 O ASP A 32 H ALA A 36 1.54
REMARK 500 H CYS A 13 O VAL A 90 1.55
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 CYS A 13 81.03 -68.55
REMARK 500 1 LYS A 14 153.89 -40.23
REMARK 500 1 HIS A 53 31.01 -152.80
REMARK 500 1 ARG A 61 39.99 -89.65
REMARK 500 1 THR A 62 -45.69 -155.35
REMARK 500 1 SER A 67 -62.52 -133.17
REMARK 500 1 ALA A 68 69.86 -161.26
REMARK 500 1 LYS A 95 166.02 -46.22
REMARK 500 1 LEU A 96 103.84 -51.60
REMARK 500 1 GLN A 98 -60.05 -142.01
REMARK 500 1 SER A 103 -58.55 -135.39
REMARK 500 2 SER A 5 92.55 -162.48
REMARK 500 2 SER A 6 94.30 -162.99
REMARK 500 2 ASN A 27 49.88 -109.39
REMARK 500 2 LEU A 33 -71.40 -39.03
REMARK 500 2 ILE A 37 -32.03 -39.87
REMARK 500 2 HIS A 53 170.58 -58.06
REMARK 500 2 ARG A 61 36.18 -90.69
REMARK 500 2 THR A 62 -44.81 -157.94
REMARK 500 2 SER A 67 150.00 166.04
REMARK 500 2 LYS A 95 169.89 -48.96
REMARK 500 2 LYS A 99 80.79 83.91
REMARK 500 2 SER A 103 -62.19 -93.62
REMARK 500 2 SER A 104 112.19 63.95
REMARK 500 3 SER A 3 170.10 59.48
REMARK 500 3 SER A 5 79.06 -107.98
REMARK 500 3 LYS A 14 153.35 -39.16
REMARK 500 3 ASP A 16 51.18 -141.76
REMARK 500 3 ILE A 37 -35.77 -39.43
REMARK 500 3 LYS A 44 -71.70 -49.68
REMARK 500 3 VAL A 51 -178.79 -171.96
REMARK 500 3 ARG A 61 36.82 -90.30
REMARK 500 3 THR A 62 -44.66 -161.47
REMARK 500 3 SER A 67 -87.91 -135.90
REMARK 500 3 ALA A 68 -85.60 -93.33
REMARK 500 3 LEU A 72 86.89 -68.33
REMARK 500 3 LYS A 95 -179.12 -63.77
REMARK 500 3 GLN A 98 -60.73 -133.94
REMARK 500 3 LYS A 99 108.49 -171.45
REMARK 500 3 SER A 103 164.74 57.70
REMARK 500 3 SER A 104 90.17 -175.44
REMARK 500 4 SER A 2 105.51 -42.20
REMARK 500 4 SER A 3 103.50 56.97
REMARK 500 4 SER A 5 -59.76 -139.02
REMARK 500 4 LYS A 14 156.18 -40.56
REMARK 500 4 GLN A 42 -70.77 -42.90
REMARK 500 4 HIS A 53 45.94 -167.52
REMARK 500 4 ARG A 61 41.55 -88.65
REMARK 500 4 THR A 62 -45.21 -158.36
REMARK 500 4 SER A 67 132.74 -179.23
REMARK 500
REMARK 500 THIS ENTRY HAS 288 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 650
REMARK 650 HELIX
REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: MMT007018190.1 RELATED DB: TARGETDB
DBREF 1V2Y A 8 99 UNP Q8VIK1 CP033_MOUSE 32 123
SEQADV 1V2Y GLY A 1 UNP Q8VIK1 CLONING ARTIFACT
SEQADV 1V2Y SER A 2 UNP Q8VIK1 CLONING ARTIFACT
SEQADV 1V2Y SER A 3 UNP Q8VIK1 CLONING ARTIFACT
SEQADV 1V2Y GLY A 4 UNP Q8VIK1 CLONING ARTIFACT
SEQADV 1V2Y SER A 5 UNP Q8VIK1 CLONING ARTIFACT
SEQADV 1V2Y SER A 6 UNP Q8VIK1 CLONING ARTIFACT
SEQADV 1V2Y GLY A 7 UNP Q8VIK1 CLONING ARTIFACT
SEQADV 1V2Y SER A 100 UNP Q8VIK1 CLONING ARTIFACT
SEQADV 1V2Y GLY A 101 UNP Q8VIK1 CLONING ARTIFACT
SEQADV 1V2Y PRO A 102 UNP Q8VIK1 CLONING ARTIFACT
SEQADV 1V2Y SER A 103 UNP Q8VIK1 CLONING ARTIFACT
SEQADV 1V2Y SER A 104 UNP Q8VIK1 CLONING ARTIFACT
SEQADV 1V2Y GLY A 105 UNP Q8VIK1 CLONING ARTIFACT
SEQRES 1 A 105 GLY SER SER GLY SER SER GLY MET THR VAL ARG VAL CYS
SEQRES 2 A 105 LYS MET ASP GLY GLU VAL MET PRO VAL VAL VAL VAL GLN
SEQRES 3 A 105 ASN ALA THR VAL LEU ASP LEU LYS LYS ALA ILE GLN ARG
SEQRES 4 A 105 TYR VAL GLN LEU LYS GLN GLU ARG GLU GLY GLY VAL GLN
SEQRES 5 A 105 HIS ILE SER TRP SER TYR VAL TRP ARG THR TYR HIS LEU
SEQRES 6 A 105 THR SER ALA GLY GLU LYS LEU THR GLU ASP ARG LYS LYS
SEQRES 7 A 105 LEU ARG ASP TYR GLY ILE ARG ASN ARG ASP GLU VAL SER
SEQRES 8 A 105 PHE ILE LYS LYS LEU GLY GLN LYS SER GLY PRO SER SER
SEQRES 9 A 105 GLY
HELIX 1 1 VAL A 30 GLU A 48 1 19
HELIX 2 2 TRP A 56 ARG A 61 1 6
HELIX 3 3 LEU A 79 TYR A 82 5 4
SHEET 1 A 5 VAL A 19 VAL A 24 0
SHEET 2 A 5 MET A 8 CYS A 13 -1 N VAL A 10 O VAL A 22
SHEET 3 A 5 ASP A 88 LYS A 94 1 O VAL A 90 N CYS A 13
SHEET 4 A 5 TYR A 63 THR A 66 -1 N THR A 66 O SER A 91
SHEET 5 A 5 LYS A 71 LEU A 72 -1 O LEU A 72 N LEU A 65
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - r 2 2 Bytes