Header list of 1uvf.pdb file
Complete list - r 25 2 Bytes
HEADER SERINE PROTEINASE INHIBITOR 20-JAN-04 1UVF
TITLE SOLUTION STRUCTURE OF THE STRUCTURED PART OF THE 15TH
TITLE 2 DOMAIN OF LEKTI
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: SERINE PROTEINASE INHIBITOR KAZAL TYPE 5;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: SHORT LEKTI-DOMAIN15, RESIDUES 989-1047;
COMPND 5 SYNONYM: LYMPHO-EPITHELIAL, KAZAL-TYPE RELATED INHIBITOR,
COMPND 6 LEKTI;
COMPND 7 ENGINEERED: YES;
COMPND 8 OTHER_DETAILS: DISULPHIDE BONDS BETWEEN CYS5 AND CYS40,
COMPND 9 BETWEEN CYS18 AND CYS37 AND BETWEEN CYS26 AND CYS58
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 TISSUE: VAGINAL EPITHELIUM;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ORIGAMI;
SOURCE 9 EXPRESSION_SYSTEM_VARIANT: DE3;
SOURCE 10 EXPRESSION_SYSTEM_VECTOR: T7-EXPRESSIONSVECTOR;
SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET32-A
KEYWDS SERINE PROTEINASE INHIBITOR, TRYPSIN INHIBITOR, KAZAL,
KEYWDS 2 PROTEASE
EXPDTA SOLUTION NMR
NUMMDL 31
AUTHOR K.VITZITHUM,P.ROESCH,U.C.MARX
REVDAT 3 24-FEB-09 1UVF 1 VERSN
REVDAT 2 13-JUN-05 1UVF 1 AUTHOR JRNL
REVDAT 1 14-APR-05 1UVF 0
JRNL AUTH H.TIDOW,T.LAUBER,K.VITZITHUM,C.SOMMERHOFF,P.ROESCH,
JRNL AUTH 2 U.C.MARX
JRNL TITL THE SOLUTION STRUCTURE OF A CHIMERIC LEKTI DOMAIN
JRNL TITL 2 REVEALS A CHAMELEON SEQUENCE
JRNL REF BIOCHEMISTRY V. 43 11238 2004
JRNL REFN ISSN 0006-2960
JRNL PMID 15366933
JRNL DOI 10.1021/BI0492399
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : X-PLOR 3.8.51
REMARK 3 AUTHORS : BRUNGER
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: SIMULATED ANNEALING
REMARK 4
REMARK 4 1UVF COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-JAN-04.
REMARK 100 THE PDBE ID CODE IS EBI-14413.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 298
REMARK 210 PH : 6.5
REMARK 210 IONIC STRENGTH : 20 MM
REMARK 210 PRESSURE : 1 ATM
REMARK 210 SAMPLE CONTENTS : 90% H20/10% D2O
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D-TOCSY; 2D-COSY;
REMARK 210 2D-NOESY; 1H,15N-HSQC;
REMARK 210 HNHA; 3D-1H,1H,
REMARK 210 15N-TOCSY-HSQC;3D-1H,1H,
REMARK 210 15N-NOESY-HSQC; 3D-1H,15N,
REMARK 210 15N-HMQC-NOESY-HSQC
REMARK 210 SPECTROMETER FIELD STRENGTH : 600
REMARK 210 SPECTROMETER MODEL : DRX600
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NDEE, NMRVIEW 5.0.4
REMARK 210 METHOD USED : SIMULATED ANNEALING
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 200
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 31
REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY; LEAST
REMARK 210 RESTRAINT VIOLATION
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD
REMARK 210 NMR-TECHNIQUES ON 15N-LABELED AND UNLABELED PROTEIN
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 400
REMARK 400 COMPOUND
REMARK 400 FUNCTION: SERINE PROTEASE INHIBITOR, PROBABLY IMPORTANT FOR THE
REMARK 400 ANTI-INFLAMMATORY AND/OR ANTIMICROBIAL PROTECTION OF MUCOUS
REMARK 400 EPITHELIA.
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLY A -2
REMARK 465 PRO A -1
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O CYS A 26 - H ARG A 53 1.58
REMARK 500 H GLY A 27 - O GLN A 31 1.56
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 ASN A 34 -78.22 -46.71
REMARK 500 2 TYR A 16 153.58 -43.84
REMARK 500 2 ASN A 34 -77.84 -49.79
REMARK 500 3 ASN A 34 -75.98 -53.07
REMARK 500 4 ASN A 34 -77.35 -41.74
REMARK 500 4 ASN A 49 51.81 -112.03
REMARK 500 5 ASN A 34 -79.44 -48.66
REMARK 500 5 ASN A 49 56.52 -103.16
REMARK 500 6 ASN A 34 -82.40 -44.61
REMARK 500 6 ASN A 49 64.45 -101.57
REMARK 500 7 ASP A 7 63.51 -150.69
REMARK 500 7 ASN A 34 -78.43 -52.77
REMARK 500 8 ASN A 34 -78.48 -50.96
REMARK 500 9 ASN A 34 -79.26 -48.18
REMARK 500 10 ASN A 34 -76.40 -53.57
REMARK 500 11 ASN A 34 -78.47 -50.44
REMARK 500 11 ASN A 49 59.99 -95.68
REMARK 500 12 ASN A 34 -79.27 -51.14
REMARK 500 12 ASN A 49 65.21 -103.37
REMARK 500 13 ASN A 34 -77.63 -49.36
REMARK 500 13 ASN A 49 56.73 -103.98
REMARK 500 14 ASP A 7 19.33 -145.02
REMARK 500 14 ASN A 34 -82.07 -46.89
REMARK 500 15 ASN A 34 -80.61 -41.97
REMARK 500 16 TYR A 16 152.00 -41.88
REMARK 500 16 ASN A 34 -80.19 -45.99
REMARK 500 17 ASN A 34 -78.56 -54.68
REMARK 500 17 ASN A 49 57.37 -96.77
REMARK 500 18 ASN A 34 -79.28 -51.55
REMARK 500 19 ASN A 34 -78.15 -54.52
REMARK 500 20 ASN A 34 -80.19 -50.60
REMARK 500 21 ASN A 34 -81.46 -49.41
REMARK 500 22 ASN A 34 -78.51 -53.77
REMARK 500 22 ASN A 49 63.29 -103.56
REMARK 500 23 ASP A 7 57.55 -148.93
REMARK 500 23 ASN A 34 -76.02 -61.03
REMARK 500 23 ASN A 49 57.83 -94.30
REMARK 500 23 HIS A 51 -169.22 -115.79
REMARK 500 24 ASP A 7 64.51 -151.31
REMARK 500 24 ASN A 34 -75.53 -67.98
REMARK 500 25 TYR A 16 152.61 -42.27
REMARK 500 25 ASN A 34 -75.23 -58.54
REMARK 500 25 ASN A 49 58.87 -94.75
REMARK 500 26 ASN A 34 -78.88 -45.55
REMARK 500 26 LYS A 57 159.40 -49.59
REMARK 500 27 ASN A 34 -78.97 -52.66
REMARK 500 28 ASP A 7 65.77 -151.56
REMARK 500 28 ASN A 34 -78.17 -43.60
REMARK 500 28 ASN A 49 64.78 -107.59
REMARK 500 29 ASN A 34 -76.07 -53.80
REMARK 500 29 ASN A 49 61.37 -100.13
REMARK 500 30 ASN A 34 -75.49 -43.09
REMARK 500 31 ASN A 34 -76.95 -55.41
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: PLANAR GROUPS
REMARK 500
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS
REMARK 500 AN RMSD GREATER THAN THIS VALUE
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 M RES CSSEQI RMS TYPE
REMARK 500 1 ARG A 9 0.23 SIDE CHAIN
REMARK 500 1 ARG A 13 0.25 SIDE CHAIN
REMARK 500 1 ARG A 46 0.11 SIDE CHAIN
REMARK 500 1 ARG A 53 0.23 SIDE CHAIN
REMARK 500 2 ARG A 9 0.30 SIDE CHAIN
REMARK 500 2 ARG A 13 0.32 SIDE CHAIN
REMARK 500 2 ARG A 46 0.22 SIDE CHAIN
REMARK 500 2 ARG A 53 0.32 SIDE CHAIN
REMARK 500 3 ARG A 9 0.25 SIDE CHAIN
REMARK 500 3 ARG A 13 0.28 SIDE CHAIN
REMARK 500 3 ARG A 46 0.31 SIDE CHAIN
REMARK 500 3 ARG A 53 0.30 SIDE CHAIN
REMARK 500 4 ARG A 9 0.21 SIDE CHAIN
REMARK 500 4 ARG A 13 0.26 SIDE CHAIN
REMARK 500 4 ARG A 46 0.31 SIDE CHAIN
REMARK 500 4 ARG A 53 0.15 SIDE CHAIN
REMARK 500 5 ARG A 9 0.24 SIDE CHAIN
REMARK 500 5 ARG A 13 0.26 SIDE CHAIN
REMARK 500 5 ARG A 46 0.28 SIDE CHAIN
REMARK 500 5 ARG A 53 0.32 SIDE CHAIN
REMARK 500 6 ARG A 9 0.24 SIDE CHAIN
REMARK 500 6 ARG A 13 0.27 SIDE CHAIN
REMARK 500 6 ARG A 46 0.31 SIDE CHAIN
REMARK 500 6 ARG A 53 0.26 SIDE CHAIN
REMARK 500 7 ARG A 9 0.27 SIDE CHAIN
REMARK 500 7 ARG A 13 0.11 SIDE CHAIN
REMARK 500 7 ARG A 46 0.32 SIDE CHAIN
REMARK 500 7 ARG A 53 0.19 SIDE CHAIN
REMARK 500 8 ARG A 9 0.23 SIDE CHAIN
REMARK 500 8 ARG A 13 0.30 SIDE CHAIN
REMARK 500 8 ARG A 46 0.16 SIDE CHAIN
REMARK 500 8 ARG A 53 0.31 SIDE CHAIN
REMARK 500 9 ARG A 9 0.24 SIDE CHAIN
REMARK 500 9 ARG A 13 0.31 SIDE CHAIN
REMARK 500 9 ARG A 46 0.30 SIDE CHAIN
REMARK 500 9 ARG A 53 0.32 SIDE CHAIN
REMARK 500 10 ARG A 9 0.32 SIDE CHAIN
REMARK 500 10 ARG A 13 0.19 SIDE CHAIN
REMARK 500 10 ARG A 46 0.26 SIDE CHAIN
REMARK 500 10 ARG A 53 0.32 SIDE CHAIN
REMARK 500 11 ARG A 9 0.32 SIDE CHAIN
REMARK 500 11 ARG A 13 0.14 SIDE CHAIN
REMARK 500 11 ARG A 46 0.22 SIDE CHAIN
REMARK 500 11 ARG A 53 0.24 SIDE CHAIN
REMARK 500 12 ARG A 9 0.18 SIDE CHAIN
REMARK 500 12 ARG A 13 0.30 SIDE CHAIN
REMARK 500 12 ARG A 46 0.19 SIDE CHAIN
REMARK 500 13 ARG A 9 0.32 SIDE CHAIN
REMARK 500 13 ARG A 13 0.22 SIDE CHAIN
REMARK 500 13 ARG A 46 0.14 SIDE CHAIN
REMARK 500 13 ARG A 53 0.28 SIDE CHAIN
REMARK 500 14 ARG A 9 0.32 SIDE CHAIN
REMARK 500 14 ARG A 13 0.30 SIDE CHAIN
REMARK 500 14 ARG A 46 0.20 SIDE CHAIN
REMARK 500 14 ARG A 53 0.21 SIDE CHAIN
REMARK 500 15 ARG A 9 0.19 SIDE CHAIN
REMARK 500 15 ARG A 13 0.31 SIDE CHAIN
REMARK 500 15 ARG A 46 0.27 SIDE CHAIN
REMARK 500 15 ARG A 53 0.31 SIDE CHAIN
REMARK 500 16 ARG A 9 0.27 SIDE CHAIN
REMARK 500 16 ARG A 13 0.27 SIDE CHAIN
REMARK 500 16 ARG A 46 0.27 SIDE CHAIN
REMARK 500 16 ARG A 53 0.30 SIDE CHAIN
REMARK 500 17 ARG A 9 0.31 SIDE CHAIN
REMARK 500 17 ARG A 13 0.15 SIDE CHAIN
REMARK 500 17 ARG A 46 0.11 SIDE CHAIN
REMARK 500 17 ARG A 53 0.19 SIDE CHAIN
REMARK 500 18 ARG A 9 0.31 SIDE CHAIN
REMARK 500 18 ARG A 13 0.14 SIDE CHAIN
REMARK 500 18 ARG A 46 0.26 SIDE CHAIN
REMARK 500 18 ARG A 53 0.32 SIDE CHAIN
REMARK 500 19 ARG A 9 0.16 SIDE CHAIN
REMARK 500 19 ARG A 13 0.31 SIDE CHAIN
REMARK 500 19 ARG A 46 0.31 SIDE CHAIN
REMARK 500 19 ARG A 53 0.21 SIDE CHAIN
REMARK 500 20 ARG A 9 0.32 SIDE CHAIN
REMARK 500 20 ARG A 13 0.32 SIDE CHAIN
REMARK 500 20 ARG A 46 0.30 SIDE CHAIN
REMARK 500 20 ARG A 53 0.11 SIDE CHAIN
REMARK 500 21 ARG A 9 0.15 SIDE CHAIN
REMARK 500 21 ARG A 13 0.21 SIDE CHAIN
REMARK 500 21 ARG A 46 0.20 SIDE CHAIN
REMARK 500 21 ARG A 53 0.26 SIDE CHAIN
REMARK 500 22 ARG A 9 0.27 SIDE CHAIN
REMARK 500 22 ARG A 13 0.24 SIDE CHAIN
REMARK 500 22 ARG A 46 0.32 SIDE CHAIN
REMARK 500 22 ARG A 53 0.29 SIDE CHAIN
REMARK 500 23 ARG A 9 0.32 SIDE CHAIN
REMARK 500 23 ARG A 13 0.28 SIDE CHAIN
REMARK 500 23 ARG A 46 0.27 SIDE CHAIN
REMARK 500 23 ARG A 53 0.21 SIDE CHAIN
REMARK 500 24 ARG A 9 0.28 SIDE CHAIN
REMARK 500 24 ARG A 13 0.21 SIDE CHAIN
REMARK 500 24 ARG A 46 0.25 SIDE CHAIN
REMARK 500 24 ARG A 53 0.26 SIDE CHAIN
REMARK 500 25 ARG A 9 0.31 SIDE CHAIN
REMARK 500 25 ARG A 13 0.22 SIDE CHAIN
REMARK 500 25 ARG A 46 0.21 SIDE CHAIN
REMARK 500 25 ARG A 53 0.27 SIDE CHAIN
REMARK 500 26 ARG A 9 0.31 SIDE CHAIN
REMARK 500 26 ARG A 13 0.24 SIDE CHAIN
REMARK 500 26 ARG A 46 0.12 SIDE CHAIN
REMARK 500 26 ARG A 53 0.31 SIDE CHAIN
REMARK 500 27 ARG A 9 0.31 SIDE CHAIN
REMARK 500 27 ARG A 13 0.11 SIDE CHAIN
REMARK 500 27 ARG A 46 0.16 SIDE CHAIN
REMARK 500 28 ARG A 9 0.20 SIDE CHAIN
REMARK 500 28 ARG A 53 0.31 SIDE CHAIN
REMARK 500 29 ARG A 9 0.24 SIDE CHAIN
REMARK 500 29 ARG A 13 0.31 SIDE CHAIN
REMARK 500 29 ARG A 46 0.12 SIDE CHAIN
REMARK 500 29 ARG A 53 0.11 SIDE CHAIN
REMARK 500 30 ARG A 9 0.32 SIDE CHAIN
REMARK 500 30 ARG A 13 0.27 SIDE CHAIN
REMARK 500 30 ARG A 46 0.25 SIDE CHAIN
REMARK 500 30 ARG A 53 0.16 SIDE CHAIN
REMARK 500 31 ARG A 9 0.28 SIDE CHAIN
REMARK 500 31 ARG A 13 0.13 SIDE CHAIN
REMARK 500 31 ARG A 46 0.12 SIDE CHAIN
REMARK 500 31 ARG A 53 0.30 SIDE CHAIN
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 1H0Z RELATED DB: PDB
REMARK 900 LEKTI DOMAIN SIX (HF7665)
REMARK 900 RELATED ID: 1HDL RELATED DB: PDB
REMARK 900 LEKTI DOMAIN ONE
REMARK 900 RELATED ID: 1UUC RELATED DB: PDB
REMARK 900 SOLUTION STRUCTURE OF A CHIMARIC LEKTI-DOMAIN
REMARK 900 RELATED ID: 1UVG RELATED DB: PDB
REMARK 900 SOLUTION STRUCTURE OF THE 15TH DOMAIN OF LEKTI
DBREF 1UVF A -2 -1 PDB 1UVF 1UVF -2 -1
DBREF 1UVF A 1 59 UNP Q9NQ38 ISK5_HUMAN 989 1047
SEQRES 1 A 61 GLY PRO ASP SER GLU MET CYS LYS ASP TYR ARG VAL LEU
SEQRES 2 A 61 PRO ARG ILE GLY TYR LEU CYS PRO LYS ASP LEU LYS PRO
SEQRES 3 A 61 VAL CYS GLY ASP ASP GLY GLN THR TYR ASN ASN PRO CYS
SEQRES 4 A 61 MET LEU CYS HIS GLU ASN LEU ILE ARG GLN THR ASN THR
SEQRES 5 A 61 HIS ILE ARG SER THR GLY LYS CYS GLU
HELIX 1 1 ASP A 1 LYS A 6 1 6
HELIX 2 2 PRO A 36 GLN A 47 1 12
SHEET 1 AA 3 GLN A 31 TYR A 33 0
SHEET 2 AA 3 VAL A 25 GLY A 27 -1 O VAL A 25 N TYR A 33
SHEET 3 AA 3 ILE A 52 THR A 55 -1 N ARG A 53 O CYS A 26
SSBOND 1 CYS A 5 CYS A 40 1555 1555 2.01
SSBOND 2 CYS A 18 CYS A 37 1555 1555 2.02
SSBOND 3 CYS A 26 CYS A 58 1555 1555 2.02
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - r 25 2 Bytes