Header list of 1um7.pdb file
Complete list - r 2 2 Bytes
HEADER PROTEIN BINDING 24-SEP-03 1UM7
TITLE SOLUTION STRUCTURE OF THE THIRD PDZ DOMAIN OF SYNAPSE-ASSOCIATED
TITLE 2 PROTEIN 102
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: SYNAPSE-ASSOCIATED PROTEIN 102;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: PDZ DOMAIN;
COMPND 5 SYNONYM: KIAA1232 PROTEIN;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: KAZUSA CDNA KIAA1232;
SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P021030-42;
SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS
KEYWDS PDZ, DISCS LARGE HOMOLOG 3, DLG3-HUMAN PRESYNAPTIC PROTEIN, RIKEN
KEYWDS 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, STRUCTURAL
KEYWDS 3 GENOMICS, PROTEIN BINDING
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR X.-R.QIN,T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL
AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 3 02-MAR-22 1UM7 1 REMARK SEQADV
REVDAT 2 24-FEB-09 1UM7 1 VERSN
REVDAT 1 24-MAR-04 1UM7 0
JRNL AUTH X.-R.QIN,T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA
JRNL TITL SOLUTION STRUCTURE OF THE THIRD PDZ DOMAIN OF
JRNL TITL 2 SYNAPSE-ASSOCIATED PROTEIN 102
JRNL REF TO BE PUBLISHED
JRNL REFN
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : VNMR 6.1C, CYANA 1.0.7
REMARK 3 AUTHORS : VARIAN (VNMR), GUENTERT, P. (CYANA)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 1UM7 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-SEP-03.
REMARK 100 THE DEPOSITION ID IS D_1000005981.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 298
REMARK 210 PH : 6.0
REMARK 210 IONIC STRENGTH : 120MM
REMARK 210 PRESSURE : AMBIENT
REMARK 210 SAMPLE CONTENTS : 1.05MM 13C, 15N-LABELED PROTEIN;
REMARK 210 20MM PHOSPHATE BUFFER; 100MM
REMARK 210 NACL; 1MM D10-DTT; 0.02% NAN3
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N
REMARK 210 -SEPARATED_NOESY
REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ
REMARK 210 SPECTROMETER MODEL : INOVA
REMARK 210 SPECTROMETER MANUFACTURER : VARIAN
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NMRPIPE 20020425, NMRVIEW 5.0.4,
REMARK 210 KUJIRA 0.854
REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 100
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20
REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST
REMARK 210 RESTRAINT VIOLATIONS, TARGET
REMARK 210 FUNCTION
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 H ASN A 68 O THR A 92 1.50
REMARK 500 O GLU A 78 H ALA A 82 1.56
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 ASP A 12 83.24 40.32
REMARK 500 1 ALA A 13 59.66 -94.98
REMARK 500 1 GLU A 15 173.85 -55.45
REMARK 500 1 SER A 25 -64.28 177.18
REMARK 500 1 GLU A 57 -65.70 -130.09
REMARK 500 1 ASN A 68 -56.01 79.47
REMARK 500 1 ALA A 87 -142.37 -65.84
REMARK 500 1 TYR A 97 95.15 -52.13
REMARK 500 1 SER A 108 137.85 63.48
REMARK 500 1 SER A 111 79.01 -179.04
REMARK 500 2 SER A 2 98.14 -179.55
REMARK 500 2 SER A 5 -60.36 -142.50
REMARK 500 2 SER A 6 97.55 54.49
REMARK 500 2 ALA A 13 76.69 69.75
REMARK 500 2 SER A 25 -60.46 -173.19
REMARK 500 2 ASP A 37 27.10 45.94
REMARK 500 2 GLU A 57 -75.25 -97.00
REMARK 500 2 ASP A 62 166.68 -47.63
REMARK 500 2 ALA A 87 -142.31 -65.79
REMARK 500 2 TYR A 97 96.84 -58.42
REMARK 500 2 SER A 107 -60.95 -95.79
REMARK 500 2 SER A 108 151.02 67.66
REMARK 500 2 SER A 111 82.02 -169.12
REMARK 500 2 SER A 112 132.67 63.31
REMARK 500 3 LYS A 23 111.90 -39.98
REMARK 500 3 SER A 25 -38.82 -175.81
REMARK 500 3 PHE A 45 165.33 178.77
REMARK 500 3 ASP A 62 153.24 -42.53
REMARK 500 3 ASN A 68 19.43 52.28
REMARK 500 3 ALA A 87 -141.10 -69.05
REMARK 500 3 TYR A 97 97.08 -56.53
REMARK 500 3 SER A 111 165.81 178.14
REMARK 500 4 SER A 5 160.74 -40.63
REMARK 500 4 ARG A 14 -44.42 -131.10
REMARK 500 4 LYS A 23 118.56 -39.73
REMARK 500 4 SER A 25 -59.49 -176.66
REMARK 500 4 GLU A 57 -74.36 -75.51
REMARK 500 4 ASP A 62 173.96 -48.19
REMARK 500 4 ASN A 68 29.15 39.63
REMARK 500 4 ALA A 87 -142.27 -66.05
REMARK 500 4 TYR A 97 93.78 -60.78
REMARK 500 4 SER A 111 84.84 64.79
REMARK 500 5 SER A 2 157.32 60.65
REMARK 500 5 SER A 5 171.83 67.91
REMARK 500 5 ALA A 13 85.60 61.18
REMARK 500 5 ARG A 14 -44.83 -134.43
REMARK 500 5 LYS A 23 101.54 -38.27
REMARK 500 5 THR A 26 23.21 47.51
REMARK 500 5 PHE A 30 148.24 -170.23
REMARK 500 5 PHE A 45 166.56 177.93
REMARK 500
REMARK 500 THIS ENTRY HAS 236 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: HSK002001206.1 RELATED DB: TARGETDB
DBREF 1UM7 A 8 107 UNP Q92796 DLG3_HUMAN 47 146
SEQADV 1UM7 GLY A 1 UNP Q92796 CLONING ARTIFACT
SEQADV 1UM7 SER A 2 UNP Q92796 CLONING ARTIFACT
SEQADV 1UM7 SER A 3 UNP Q92796 CLONING ARTIFACT
SEQADV 1UM7 GLY A 4 UNP Q92796 CLONING ARTIFACT
SEQADV 1UM7 SER A 5 UNP Q92796 CLONING ARTIFACT
SEQADV 1UM7 SER A 6 UNP Q92796 CLONING ARTIFACT
SEQADV 1UM7 GLY A 7 UNP Q92796 CLONING ARTIFACT
SEQADV 1UM7 SER A 108 UNP Q92796 CLONING ARTIFACT
SEQADV 1UM7 GLY A 109 UNP Q92796 CLONING ARTIFACT
SEQADV 1UM7 PRO A 110 UNP Q92796 CLONING ARTIFACT
SEQADV 1UM7 SER A 111 UNP Q92796 CLONING ARTIFACT
SEQADV 1UM7 SER A 112 UNP Q92796 CLONING ARTIFACT
SEQADV 1UM7 GLY A 113 UNP Q92796 CLONING ARTIFACT
SEQRES 1 A 113 GLY SER SER GLY SER SER GLY ARG PRO GLY GLY ASP ALA
SEQRES 2 A 113 ARG GLU PRO ARG LYS ILE ILE LEU HIS LYS GLY SER THR
SEQRES 3 A 113 GLY LEU GLY PHE ASN ILE VAL GLY GLY GLU ASP GLY GLU
SEQRES 4 A 113 GLY ILE PHE VAL SER PHE ILE LEU ALA GLY GLY PRO ALA
SEQRES 5 A 113 ASP LEU SER GLY GLU LEU ARG ARG GLY ASP ARG ILE LEU
SEQRES 6 A 113 SER VAL ASN GLY VAL ASN LEU ARG ASN ALA THR HIS GLU
SEQRES 7 A 113 GLN ALA ALA ALA ALA LEU LYS ARG ALA GLY GLN SER VAL
SEQRES 8 A 113 THR ILE VAL ALA GLN TYR ARG PRO GLU GLU TYR SER ARG
SEQRES 9 A 113 PHE GLU SER SER GLY PRO SER SER GLY
HELIX 1 1 GLY A 50 SER A 55 1 6
HELIX 2 2 THR A 76 ARG A 86 1 11
HELIX 3 3 ARG A 98 SER A 108 1 11
SHEET 1 A 3 PRO A 16 HIS A 22 0
SHEET 2 A 3 SER A 90 GLN A 96 -1 O ALA A 95 N ARG A 17
SHEET 3 A 3 ARG A 63 VAL A 67 -1 N SER A 66 O VAL A 94
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - r 2 2 Bytes