Header list of 1ugj.pdb file
Complete list - r 2 2 Bytes
HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 16-JUN-03 1UGJ
TITLE SOLUTION STRUCTURE OF A MURINE HYPOTHETICAL PROTEIN FROM RIKEN CDNA
TITLE 2 2310057J16
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: RIKEN CDNA 2310057J16 PROTEIN;
COMPND 3 CHAIN: A;
COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS;
SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE;
SOURCE 4 ORGANISM_TAXID: 10090;
SOURCE 5 GENE: RIKEN CDNA 2310057J16;
SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P020520-18;
SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS STRUCTURAL GENOMICS, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE,
KEYWDS 2 RSGI, UNKNOWN FUNCTION
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR T.NAGASHIMA,F.HAYASHI,M.SHIROUZU,T.TERADA,T.KIGAWA,M.INOUE,T.YABUKI,
AUTHOR 2 M.AOKI,E.SEKI,T.MATSUDA,H.HIROTA,M.YOSHIDA,A.TANAKA,T.OSANAI,
AUTHOR 3 T.ARAKAWA,P.CARNINCI,J.KAWAI,Y.HAYASHIZAKI,S.YOKOYAMA,RIKEN
AUTHOR 4 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 3 02-MAR-22 1UGJ 1 REMARK SEQADV
REVDAT 2 24-FEB-09 1UGJ 1 VERSN
REVDAT 1 03-AUG-04 1UGJ 0
JRNL AUTH T.NAGASHIMA,F.HAYASHI,M.SHIROUZU,T.TERADA,T.KIGAWA,M.INOUE,
JRNL AUTH 2 T.YABUKI,M.AOKI,E.SEKI,T.MATSUDA,H.HIROTA,M.YOSHIDA,
JRNL AUTH 3 A.TANAKA,T.OSANAI,T.ARAKAWA,P.CARNINCI,J.KAWAI,
JRNL AUTH 4 Y.HAYASHIZAKI,S.YOKOYAMA
JRNL TITL SOLUTION STRUCTURE OF A MURINE HYPOTHETICAL PROTEIN FROM
JRNL TITL 2 RIKEN CDNA 2310057J16
JRNL REF TO BE PUBLISHED
JRNL REFN
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : VNMR 6.1C, CYANA 1.0.7
REMARK 3 AUTHORS : VARIAN (VNMR), GUENTERT, P. (CYANA)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 1UGJ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-JUN-03.
REMARK 100 THE DEPOSITION ID IS D_1000005797.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 298
REMARK 210 PH : 6.0
REMARK 210 IONIC STRENGTH : 120MM
REMARK 210 PRESSURE : AMBIENT
REMARK 210 SAMPLE CONTENTS : 1.2MM 13C, 15N-LABELED PROTEIN;
REMARK 210 20MM PHOSPHATE BUFFER; 100MM
REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 10%
REMARK 210 D2O
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N
REMARK 210 -SEPARATED_NOESY
REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ
REMARK 210 SPECTROMETER MODEL : INOVA
REMARK 210 SPECTROMETER MANUFACTURER : VARIAN
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NMRPIPE 20020425, NMRVIEW 5.0.4,
REMARK 210 KUJIRA 0.822, CYANA 1.0.7
REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 100
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20
REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST
REMARK 210 RESTRAINT VIOLATIONS, TARGET
REMARK 210 FUNCTION
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O GLU A 46 H LYS A 50 1.55
REMARK 500 O GLU A 38 HD21 ASN A 42 1.58
REMARK 500 O TYR A 100 H ASP A 122 1.58
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 ARG A 9 -166.99 -129.40
REMARK 500 1 LEU A 10 -147.28 -72.41
REMARK 500 1 TYR A 11 91.00 -161.09
REMARK 500 1 GLU A 13 152.34 -40.38
REMARK 500 1 ALA A 16 99.63 -67.95
REMARK 500 1 CYS A 30 -39.16 -178.41
REMARK 500 1 LEU A 32 47.33 -144.81
REMARK 500 1 ASP A 62 106.40 169.85
REMARK 500 1 SER A 63 84.06 68.53
REMARK 500 1 SER A 64 46.29 36.70
REMARK 500 1 GLN A 66 -179.81 48.83
REMARK 500 1 THR A 77 -144.97 -140.23
REMARK 500 1 TYR A 86 112.16 -164.84
REMARK 500 1 ASP A 122 26.39 -156.81
REMARK 500 1 ALA A 123 141.38 175.57
REMARK 500 1 ILE A 126 176.83 -57.44
REMARK 500 1 GLN A 127 -179.11 -62.62
REMARK 500 1 LYS A 134 -64.72 -170.44
REMARK 500 1 SER A 140 -53.23 -159.60
REMARK 500 2 SER A 2 109.79 57.73
REMARK 500 2 SER A 5 132.47 61.96
REMARK 500 2 ARG A 9 105.51 -39.37
REMARK 500 2 SER A 15 77.50 -150.70
REMARK 500 2 ALA A 16 91.91 -168.90
REMARK 500 2 LYS A 17 38.60 -161.88
REMARK 500 2 SER A 18 142.74 -39.22
REMARK 500 2 CYS A 30 -38.96 -178.46
REMARK 500 2 LEU A 32 43.76 -141.40
REMARK 500 2 ASN A 37 34.69 -99.40
REMARK 500 2 LYS A 52 30.16 -98.00
REMARK 500 2 ASP A 62 -64.14 -137.62
REMARK 500 2 SER A 63 116.77 -177.50
REMARK 500 2 SER A 64 49.15 39.05
REMARK 500 2 CYS A 65 -73.86 -109.88
REMARK 500 2 THR A 77 -145.80 -138.67
REMARK 500 2 TYR A 86 129.65 174.99
REMARK 500 2 LYS A 107 33.59 75.74
REMARK 500 2 SER A 120 33.80 -91.44
REMARK 500 2 ASP A 122 20.67 -147.63
REMARK 500 2 GLN A 127 166.30 -46.15
REMARK 500 2 TRP A 131 -88.27 -63.74
REMARK 500 2 GLN A 132 105.53 -57.78
REMARK 500 2 SER A 133 140.09 69.86
REMARK 500 2 LYS A 135 88.06 42.27
REMARK 500 3 SER A 6 108.40 177.00
REMARK 500 3 LYS A 12 138.27 62.62
REMARK 500 3 GLU A 13 153.30 -44.39
REMARK 500 3 SER A 15 100.35 -48.31
REMARK 500 3 LYS A 17 105.20 -176.44
REMARK 500 3 CYS A 30 -38.85 -179.83
REMARK 500
REMARK 500 THIS ENTRY HAS 433 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: MMK001001534.1 RELATED DB: TARGETDB
DBREF 1UGJ A 8 135 UNP Q80VC9 K1543_MOUSE 1141 1268
SEQADV 1UGJ GLY A 1 UNP Q80VC9 CLONING ARTIFACT
SEQADV 1UGJ SER A 2 UNP Q80VC9 CLONING ARTIFACT
SEQADV 1UGJ SER A 3 UNP Q80VC9 CLONING ARTIFACT
SEQADV 1UGJ GLY A 4 UNP Q80VC9 CLONING ARTIFACT
SEQADV 1UGJ SER A 5 UNP Q80VC9 CLONING ARTIFACT
SEQADV 1UGJ SER A 6 UNP Q80VC9 CLONING ARTIFACT
SEQADV 1UGJ GLY A 7 UNP Q80VC9 CLONING ARTIFACT
SEQADV 1UGJ SER A 136 UNP Q80VC9 CLONING ARTIFACT
SEQADV 1UGJ GLY A 137 UNP Q80VC9 CLONING ARTIFACT
SEQADV 1UGJ PRO A 138 UNP Q80VC9 CLONING ARTIFACT
SEQADV 1UGJ SER A 139 UNP Q80VC9 CLONING ARTIFACT
SEQADV 1UGJ SER A 140 UNP Q80VC9 CLONING ARTIFACT
SEQADV 1UGJ GLY A 141 UNP Q80VC9 CLONING ARTIFACT
SEQRES 1 A 141 GLY SER SER GLY SER SER GLY PRO ARG LEU TYR LYS GLU
SEQRES 2 A 141 PRO SER ALA LYS SER ASN LYS PHE ILE ILE HIS ASN ALA
SEQRES 3 A 141 LEU SER HIS CYS CYS LEU ALA GLY LYS VAL ASN GLU PRO
SEQRES 4 A 141 GLN LYS ASN ARG ILE LEU GLU GLU ILE GLU LYS SER LYS
SEQRES 5 A 141 ALA ASN HIS PHE LEU ILE LEU PHE ARG ASP SER SER CYS
SEQRES 6 A 141 GLN PHE ARG ALA LEU TYR THR LEU SER GLY GLU THR GLU
SEQRES 7 A 141 GLU LEU SER ARG LEU ALA GLY TYR GLY PRO ARG THR VAL
SEQRES 8 A 141 THR PRO ALA MET VAL GLU GLY ILE TYR LYS TYR ASN SER
SEQRES 9 A 141 ASP ARG LYS ARG PHE THR GLN ILE PRO ALA LYS THR MET
SEQRES 10 A 141 SER MET SER VAL ASP ALA PHE THR ILE GLN GLY HIS LEU
SEQRES 11 A 141 TRP GLN SER LYS LYS SER GLY PRO SER SER GLY
HELIX 1 1 ASN A 19 CYS A 30 1 12
HELIX 2 2 ASN A 37 SER A 51 1 15
SHEET 1 A 4 PHE A 56 PHE A 60 0
SHEET 2 A 4 PHE A 67 LEU A 73 -1 O ARG A 68 N LEU A 59
SHEET 3 A 4 LEU A 80 ALA A 84 -1 O SER A 81 N THR A 72
SHEET 4 A 4 THR A 90 VAL A 91 -1 O VAL A 91 N LEU A 80
SHEET 1 B 3 ARG A 108 GLN A 111 0
SHEET 2 B 3 VAL A 96 ASN A 103 -1 N LYS A 101 O THR A 110
SHEET 3 B 3 ALA A 123 ILE A 126 -1 O ALA A 123 N TYR A 100
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - r 2 2 Bytes