Header list of 1ufn.pdb file
Complete list - r 2 2 Bytes
HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 02-JUN-03 1UFN
TITLE SOLUTION STRUCTURE OF THE SAND DOMAIN OF THE PUTATIVE NUCLEAR PROTEIN
TITLE 2 HOMOLOG (5830484A20RIK)
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: PUTATIVE NUCLEAR PROTEIN HOMOLOG 5830484A20RIK;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: SAND DOMAIN;
COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS;
SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE;
SOURCE 4 ORGANISM_TAXID: 10090;
SOURCE 5 GENE: RIKEN CDNA 5830484A20;
SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P021030-59;
SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS SAND DOMAIN, KDWK MOTIF, NUCLEAR PROTEIN, STRUCTURAL GENOMICS, RIKEN
KEYWDS 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, UNKNOWN FUNCTION
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR N.TOCHIO,N.KOBAYASHI,S.KOSHIBA,T.KIGAWA,M.INOUE,M.SHIROUZU,T.TERADA,
AUTHOR 2 T.YABUKI,M.AOKI,E.SEKI,T.MATSUDA,H.HIROTA,M.YOSHIDA,A.TANAKA,
AUTHOR 3 T.OSANAI,Y.MATSUO,T.ARAKAWA,P.CARNINCI,J.KAWAI,Y.HAYASHIZAKI,
AUTHOR 4 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 3 02-MAR-22 1UFN 1 REMARK SEQADV
REVDAT 2 24-FEB-09 1UFN 1 VERSN
REVDAT 1 22-JUN-04 1UFN 0
JRNL AUTH N.TOCHIO,N.KOBAYASHI,S.KOSHIBA,T.KIGAWA,M.INOUE,M.SHIROUZU,
JRNL AUTH 2 T.TERADA,T.YABUKI,M.AOKI,E.SEKI,T.MATSUDA,H.HIROTA,
JRNL AUTH 3 M.YOSHIDA,A.TANAKA,T.OSANAI,Y.MATSUO,T.ARAKAWA,P.CARNINCI,
JRNL AUTH 4 J.KAWAI,Y.HAYASHIZAKI,S.YOKOYAMA
JRNL TITL SOLUTION STRUCTURE OF THE SAND DOMAIN OF THE PUTATIVE
JRNL TITL 2 NUCLEAR PROTEIN HOMOLOG (5830484A20RIK)
JRNL REF TO BE PUBLISHED
JRNL REFN
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : XWINNMR 2.6, CYANA 2.0.14
REMARK 3 AUTHORS : BRUKER (XWINNMR), GUENTERT, P. (CYANA)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 1UFN COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-JUN-03.
REMARK 100 THE DEPOSITION ID IS D_1000005774.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 298
REMARK 210 PH : 6.0
REMARK 210 IONIC STRENGTH : 120MM
REMARK 210 PRESSURE : AMBIENT
REMARK 210 SAMPLE CONTENTS : 1.3MM SAND DOMAIN U-15N, 13C;
REMARK 210 20MM PHOSPHATE BUFFER NA; 100MM
REMARK 210 NACL; 0.02% NAN3; 10% D2O
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N
REMARK 210 -SEPARATED_NOESY
REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ
REMARK 210 SPECTROMETER MODEL : AVANCE
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NMRPIPE 20020425, NMRVIEW 5.0.4,
REMARK 210 KUJIRA 0.816, CYANA 2.0.14
REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 100
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20
REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST
REMARK 210 RESTRAINT VIOLATIONS, TARGET
REMARK 210 FUNCTION
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 PRO A 15 2.49 -69.75
REMARK 500 1 LYS A 40 102.87 -57.74
REMARK 500 1 VAL A 52 -32.43 -35.21
REMARK 500 1 PRO A 91 98.60 -69.73
REMARK 500 2 PRO A 15 3.65 -69.71
REMARK 500 2 VAL A 52 -34.94 -33.88
REMARK 500 3 ALA A 10 175.25 -59.81
REMARK 500 3 PRO A 15 3.58 -69.73
REMARK 500 3 VAL A 52 -37.39 -33.76
REMARK 500 4 PRO A 15 2.79 -69.75
REMARK 500 4 VAL A 52 -31.40 -38.44
REMARK 500 4 LEU A 78 -39.82 -38.75
REMARK 500 5 PRO A 15 2.72 -69.72
REMARK 500 5 VAL A 52 -32.99 -34.33
REMARK 500 6 PRO A 15 2.87 -69.77
REMARK 500 6 VAL A 52 -30.45 -35.72
REMARK 500 6 PRO A 91 2.01 -69.77
REMARK 500 6 SER A 92 105.52 -52.11
REMARK 500 7 PRO A 15 2.57 -69.80
REMARK 500 7 VAL A 52 -32.74 -33.75
REMARK 500 7 PRO A 91 -179.62 -69.81
REMARK 500 8 VAL A 52 -31.26 -34.83
REMARK 500 8 LEU A 78 -39.20 -39.69
REMARK 500 9 VAL A 52 -26.48 -38.32
REMARK 500 9 PRO A 91 -171.56 -69.71
REMARK 500 10 PRO A 15 5.02 -69.84
REMARK 500 10 VAL A 52 -28.60 -36.92
REMARK 500 10 SER A 92 103.62 -55.87
REMARK 500 11 PRO A 15 2.43 -69.81
REMARK 500 11 VAL A 52 -27.75 -37.40
REMARK 500 11 ASP A 66 107.36 -52.99
REMARK 500 12 PRO A 15 2.75 -69.71
REMARK 500 12 VAL A 52 -28.03 -37.00
REMARK 500 12 PRO A 91 -171.09 -69.79
REMARK 500 13 PRO A 15 2.70 -69.78
REMARK 500 13 VAL A 52 -25.86 -39.16
REMARK 500 14 PRO A 15 2.31 -69.80
REMARK 500 14 LYS A 40 103.58 -56.96
REMARK 500 14 VAL A 52 -26.61 -38.02
REMARK 500 14 LYS A 65 -61.12 -96.60
REMARK 500 15 PRO A 15 2.94 -69.76
REMARK 500 15 LYS A 40 105.20 -55.41
REMARK 500 15 VAL A 52 -26.50 -38.60
REMARK 500 16 VAL A 52 -24.82 -39.77
REMARK 500 17 VAL A 52 -33.06 -34.05
REMARK 500 18 PRO A 15 3.44 -69.70
REMARK 500 18 VAL A 52 -29.88 -34.67
REMARK 500 18 LYS A 65 -64.68 -95.56
REMARK 500 18 ASP A 66 109.08 -56.96
REMARK 500 19 PRO A 15 3.76 -69.76
REMARK 500
REMARK 500 THIS ENTRY HAS 58 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: MMK001007045.1 RELATED DB: TARGETDB
DBREF 1UFN A 8 88 UNP Q8BVK9 Q8BVK9_MOUSE 353 433
SEQADV 1UFN GLY A 1 UNP Q8BVK9 CLONING ARTIFACT
SEQADV 1UFN SER A 2 UNP Q8BVK9 CLONING ARTIFACT
SEQADV 1UFN SER A 3 UNP Q8BVK9 CLONING ARTIFACT
SEQADV 1UFN GLY A 4 UNP Q8BVK9 CLONING ARTIFACT
SEQADV 1UFN SER A 5 UNP Q8BVK9 CLONING ARTIFACT
SEQADV 1UFN SER A 6 UNP Q8BVK9 CLONING ARTIFACT
SEQADV 1UFN GLY A 7 UNP Q8BVK9 CLONING ARTIFACT
SEQADV 1UFN SER A 89 UNP Q8BVK9 CLONING ARTIFACT
SEQADV 1UFN GLY A 90 UNP Q8BVK9 CLONING ARTIFACT
SEQADV 1UFN PRO A 91 UNP Q8BVK9 CLONING ARTIFACT
SEQADV 1UFN SER A 92 UNP Q8BVK9 CLONING ARTIFACT
SEQADV 1UFN SER A 93 UNP Q8BVK9 CLONING ARTIFACT
SEQADV 1UFN GLY A 94 UNP Q8BVK9 CLONING ARTIFACT
SEQRES 1 A 94 GLY SER SER GLY SER SER GLY ASN ASP ALA VAL ASP PHE
SEQRES 2 A 94 SER PRO THR LEU PRO VAL THR CYS GLY LYS ALA LYS GLY
SEQRES 3 A 94 THR LEU PHE GLN GLU LYS LEU LYS GLN GLY ALA SER LYS
SEQRES 4 A 94 LYS CYS ILE GLN ASN GLU ALA GLY ASP TRP LEU THR VAL
SEQRES 5 A 94 LYS GLU PHE LEU ASN GLU GLY GLY ARG ALA THR SER LYS
SEQRES 6 A 94 ASP TRP LYS GLY VAL ILE ARG CYS ASN GLY GLU THR LEU
SEQRES 7 A 94 ARG HIS LEU GLU GLN LYS GLY LEU LEU PHE SER GLY PRO
SEQRES 8 A 94 SER SER GLY
HELIX 1 1 ASP A 9 SER A 14 5 6
HELIX 2 2 GLN A 30 GLN A 35 1 6
HELIX 3 3 THR A 51 GLY A 60 1 10
HELIX 4 4 ASP A 66 ILE A 71 1 6
HELIX 5 5 LEU A 78 LYS A 84 1 7
SHEET 1 A 2 THR A 16 CYS A 21 0
SHEET 2 A 2 ALA A 24 PHE A 29 -1 O LEU A 28 N LEU A 17
SHEET 1 B 2 ILE A 42 GLN A 43 0
SHEET 2 B 2 TRP A 49 LEU A 50 -1 O LEU A 50 N ILE A 42
SHEET 1 C 2 ARG A 72 CYS A 73 0
SHEET 2 C 2 GLU A 76 THR A 77 -1 O GLU A 76 N CYS A 73
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - r 2 2 Bytes