Header list of 1ufm.pdb file
Complete list - n 20 2 Bytes
HEADER SIGNALING PROTEIN 02-JUN-03 1UFM
TITLE SOLUTION STRUCTURE OF THE PCI DOMAIN
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: COP9 COMPLEX SUBUNIT 4;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: PCI DOMAIN;
COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS;
SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE;
SOURCE 4 ORGANISM_TAXID: 10090;
SOURCE 5 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 6 EXPRESSION_SYSTEM_PLASMID: P020826-24;
SOURCE 7 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS HELIX-TURN-HELIX, STRUCTURAL GENOMICS, RIKEN STRUCTURAL
KEYWDS 2 GENOMICS/PROTEOMICS INITIATIVE, RSGI, SIGNALING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR S.SUZUKI,H.HATANAKA,T.KIGAWA,M.SHIROUZU,Y.HAYASHIZAKI,THE RIKEN
AUTHOR 2 GENOME EXPLORATION RESEARCH GROUP PHASE I & II TEAMS,S.YOKOYAMA,
AUTHOR 3 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 3 20-JUN-18 1UFM 1 JRNL REMARK
REVDAT 2 24-FEB-09 1UFM 1 VERSN
REVDAT 1 29-JUN-04 1UFM 0
JRNL AUTH S.SUZUKI,H.HATANAKA,T.KIGAWA,M.SHIROUZU,Y.HAYASHIZAKI,
JRNL AUTH 2 THE RIKEN GENOME EXPLORATION RESEARCH GROUP PHASE I &
JRNL AUTH 3 II TEAMS,S.YOKOYAMA
JRNL TITL SOLUTION STRUCTURE OF THE PCI DOMAIN
JRNL REF TO BE PUBLISHED
JRNL REFN
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : VNMR 6.1B, CYANA 1.0.7
REMARK 3 AUTHORS : VARIAN (VNMR), GUENTERT, P. (CYANA)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 1UFM COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-JUN-03.
REMARK 100 THE DEPOSITION ID IS D_1000005773.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 298
REMARK 210 PH : 6.0
REMARK 210 IONIC STRENGTH : 0.12
REMARK 210 PRESSURE : AMBIENT
REMARK 210 SAMPLE CONTENTS : 6.1MM 13C/15N-PCI DOMAIN, 20MM
REMARK 210 PHOSPHATE BUFFER NA, 100MM NACL,
REMARK 210 1MM D-DTT
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C
REMARK 210 -SEPARATED_NOESY
REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ
REMARK 210 SPECTROMETER MODEL : INOVA
REMARK 210 SPECTROMETER MANUFACTURER : VARIAN
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NMRPIPE 20020425, NMRVIEW 5.0.4,
REMARK 210 KUJIRA 0.771, OLIVIA 1.9.5,
REMARK 210 CYANA 1.0.7
REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 100
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20
REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O VAL A 304 H ASN A 308 1.51
REMARK 500 O THR A 320 H LEU A 324 1.57
REMARK 500 O LYS A 337 H GLN A 341 1.57
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 SER A 293 84.44 60.37
REMARK 500 1 SER A 297 -53.49 -156.88
REMARK 500 1 LEU A 300 169.06 -45.52
REMARK 500 1 ASP A 301 107.49 -58.76
REMARK 500 1 LEU A 315 -82.19 -101.56
REMARK 500 1 GLU A 365 77.21 60.15
REMARK 500 1 SER A 367 -59.64 -142.12
REMARK 500 2 SER A 290 -58.15 -152.16
REMARK 500 2 SER A 293 165.68 56.59
REMARK 500 2 SER A 297 -57.46 -174.42
REMARK 500 2 LEU A 300 96.50 -57.77
REMARK 500 2 LEU A 315 -87.85 -93.34
REMARK 500 2 GLU A 365 95.15 55.27
REMARK 500 2 SER A 367 84.05 41.84
REMARK 500 2 SER A 371 -58.36 -149.68
REMARK 500 3 SER A 290 81.39 -172.72
REMARK 500 3 SER A 291 -57.99 -144.38
REMARK 500 3 SER A 293 161.76 64.68
REMARK 500 3 SER A 294 154.87 61.31
REMARK 500 3 SER A 297 114.98 -165.60
REMARK 500 3 LEU A 300 77.55 37.44
REMARK 500 3 LEU A 315 -69.42 -137.29
REMARK 500 3 ALA A 366 -62.10 -107.61
REMARK 500 3 SER A 371 88.87 -162.08
REMARK 500 4 SER A 293 101.80 -170.09
REMARK 500 4 SER A 294 -60.51 -105.95
REMARK 500 4 SER A 297 -65.31 -103.63
REMARK 500 4 LEU A 300 156.77 -40.57
REMARK 500 4 ASP A 301 107.39 -59.50
REMARK 500 4 LEU A 315 -63.17 -139.65
REMARK 500 4 SER A 367 -62.57 75.08
REMARK 500 4 SER A 371 89.22 46.43
REMARK 500 5 SER A 290 -58.41 -125.01
REMARK 500 5 SER A 291 -58.32 -169.97
REMARK 500 5 SER A 297 86.51 46.31
REMARK 500 5 LEU A 300 107.01 -42.73
REMARK 500 5 LEU A 315 -79.47 -102.11
REMARK 500 5 GLU A 365 154.15 59.85
REMARK 500 5 ALA A 366 89.78 41.55
REMARK 500 5 SER A 367 110.35 -162.82
REMARK 500 6 SER A 293 80.39 -175.33
REMARK 500 6 SER A 294 114.82 179.18
REMARK 500 6 SER A 297 101.49 -51.35
REMARK 500 6 ASP A 301 107.95 -58.99
REMARK 500 6 LEU A 315 -79.14 -101.57
REMARK 500 6 GLU A 329 17.13 56.64
REMARK 500 6 ALA A 366 151.88 67.52
REMARK 500 6 SER A 367 -63.38 -136.57
REMARK 500 7 SER A 294 85.65 -174.67
REMARK 500 7 SER A 298 98.36 -172.21
REMARK 500
REMARK 500 THIS ENTRY HAS 142 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: MMT007014683.1 RELATED DB: TARGETDB
DBREF 1UFM A 296 366 UNP O88544 CSN4_MOUSE 296 366
SEQADV 1UFM GLY A 289 UNP O88544 CLONING ARTIFACT
SEQADV 1UFM SER A 290 UNP O88544 CLONING ARTIFACT
SEQADV 1UFM SER A 291 UNP O88544 CLONING ARTIFACT
SEQADV 1UFM GLY A 292 UNP O88544 CLONING ARTIFACT
SEQADV 1UFM SER A 293 UNP O88544 CLONING ARTIFACT
SEQADV 1UFM SER A 294 UNP O88544 CLONING ARTIFACT
SEQADV 1UFM GLY A 295 UNP O88544 CLONING ARTIFACT
SEQADV 1UFM SER A 367 UNP O88544 CLONING ARTIFACT
SEQADV 1UFM GLY A 368 UNP O88544 CLONING ARTIFACT
SEQADV 1UFM PRO A 369 UNP O88544 CLONING ARTIFACT
SEQADV 1UFM SER A 370 UNP O88544 CLONING ARTIFACT
SEQADV 1UFM SER A 371 UNP O88544 CLONING ARTIFACT
SEQADV 1UFM GLY A 372 UNP O88544 CLONING ARTIFACT
SEQRES 1 A 84 GLY SER SER GLY SER SER GLY GLY SER SER ILE LEU ASP
SEQRES 2 A 84 ARG ALA VAL ILE GLU HIS ASN LEU LEU SER ALA SER LYS
SEQRES 3 A 84 LEU TYR ASN ASN ILE THR PHE GLU GLU LEU GLY ALA LEU
SEQRES 4 A 84 LEU GLU ILE PRO ALA ALA LYS ALA GLU LYS ILE ALA SER
SEQRES 5 A 84 GLN MET ILE THR GLU GLY ARG MET ASN GLY PHE ILE ASP
SEQRES 6 A 84 GLN ILE ASP GLY ILE VAL HIS PHE GLU THR ARG GLU ALA
SEQRES 7 A 84 SER GLY PRO SER SER GLY
HELIX 1 1 ASP A 301 LEU A 315 1 15
HELIX 2 2 PHE A 321 LEU A 328 1 8
HELIX 3 3 PRO A 331 GLU A 345 1 15
SHEET 1 A 3 ASN A 318 THR A 320 0
SHEET 2 A 3 ILE A 358 PHE A 361 -1 O VAL A 359 N ILE A 319
SHEET 3 A 3 GLY A 350 ASP A 353 -1 N ASP A 353 O ILE A 358
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - n 20 2 Bytes