Header list of 1uc6.pdb file
Complete list - r 2 2 Bytes
HEADER PROTEIN BINDING 08-APR-03 1UC6
TITLE SOLUTION STRUCTURE OF THE CARBOXYL TERMINAL DOMAIN OF THE CILIARY
TITLE 2 NEUROTROPHIC FACTOR RECEPTOR
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: CILIARY NEUROTROPHIC FACTOR RECEPTOR ALPHA;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: CARBOXYL TERMINAL DOMAIN;
COMPND 5 SYNONYM: CNTF RECEPTOR;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21;
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693;
SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21;
SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-6P1
KEYWDS CYTOKINE, CILIARY NEUROTROPHIC FACTOR, LEUKEMIA INHIBITORY FACTOR,
KEYWDS 2 CYTOKINE RECEPTOR, FIBRONECTIN TYPE III DOMAIN-LIKE TOPOLOGY, SEVEN
KEYWDS 3 BETA-STRANDS, TWO ANTI-PARALLEL BETA-SHEETS, PROTEIN BINDING
EXPDTA SOLUTION NMR
NUMMDL 21
MDLTYP MINIMIZED AVERAGE
AUTHOR D.MAN,W.HE,K.H.SZE,G.KE,D.K.SMITH,N.Y.IP,G.ZHU
REVDAT 3 02-MAR-22 1UC6 1 REMARK SEQADV
REVDAT 2 24-FEB-09 1UC6 1 VERSN
REVDAT 1 10-AUG-04 1UC6 0
JRNL AUTH D.MAN,W.HE,K.H.SZE,K.GONG,D.K.SMITH,G.ZHU,N.Y.IP
JRNL TITL SOLUTION STRUCTURE OF THE C-TERMINAL DOMAIN OF THE CILIARY
JRNL TITL 2 NEUROTROPHIC FACTOR (CNTF) RECEPTOR AND LIGAND FREE
JRNL TITL 3 ASSOCIATIONS AMONG COMPONENTS OF THE CNTF RECEPTOR COMPLEX
JRNL REF J.BIOL.CHEM. V. 278 23285 2003
JRNL REFN ISSN 0021-9258
JRNL PMID 12707266
JRNL DOI 10.1074/JBC.M301976200
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : VNMR 6.1C, CNS 1.1
REMARK 3 AUTHORS : VARIAN (VNMR),
REMARK 3 BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE,JIANG,KUSZEWSKI,
REMARK 3 NILGES, PANNU,READ,RICE,SIMONSON,WARREN (CNS)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: FOLLOWING IDENTIFICATION OF THE GLOBAL
REMARK 3 FOLD FROM MANUAL INSPECTION OF THE NUCLEAR OVERHAUSER EFFECT
REMARK 3 SPECTROSCOPY DATA, AMBIGUOUS NOE RESTRAINTS WERE RESOLVED USING
REMARK 3 THE ITERATIVE ARIA METHOD (NILGES ET AL., 1997) AND THE
REMARK 3 STRUCTURE WAS DETERMINED BY SIMULATED ANNEALING USING THE CNS
REMARK 3 PACKAGE.
REMARK 4
REMARK 4 1UC6 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-APR-03.
REMARK 100 THE DEPOSITION ID IS D_1000005666.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 298
REMARK 210 PH : 6.5
REMARK 210 IONIC STRENGTH : 100MM NACL, 10MM SODIUM
REMARK 210 PHOSPHATE, 0.1MM EDTA
REMARK 210 PRESSURE : AMBIENT
REMARK 210 SAMPLE CONTENTS : 2MM CNTFR-BC U-15N; 100MM NACL,
REMARK 210 10MM SODIUM PHOSPHATE, 0.1MM
REMARK 210 EDTA; 1.3MM CNTFR-BC U-15N,13C;
REMARK 210 100MM NACL, 10MM SODIUM
REMARK 210 PHOSPHATE, 0.1MM EDTA
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C
REMARK 210 -SEPARATED_NOESY; HNHA; NJ-HMQC
REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 500 MHZ
REMARK 210 SPECTROMETER MODEL : INOVA
REMARK 210 SPECTROMETER MANUFACTURER : VARIAN
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NMRPIPE 2.0, PIPP 1.0, SPARKY
REMARK 210 1.06, ARIA 1.1, CNS 1.1
REMARK 210 METHOD USED : SIMULATED ANNEALING
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 100
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 21
REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST
REMARK 210 ENERGY
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: FOR DETERMINATION OF HYDROGEN BONDS, AMIDE PROTONS
REMARK 210 EXCHANGING SLOWLY WITH DEUTERONS WERE IDENTIFIED BY TIME COURSE
REMARK 210 1H-15N HSQC EXPERIMENTS ON A FREEZE-DRIED 15N-LABELLED SAMPLE OF
REMARK 210 BC DISSOLVED IN D2O BUFFER.
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 LEU A 3 82.70 51.40
REMARK 500 1 SER A 5 33.85 -79.25
REMARK 500 1 PRO A 23 32.84 -78.44
REMARK 500 1 ARG A 24 -4.03 -160.52
REMARK 500 1 PRO A 37 -95.98 -76.30
REMARK 500 1 PRO A 43 100.08 -57.17
REMARK 500 1 ASN A 65 36.80 -158.41
REMARK 500 1 GLU A 90 -78.40 -69.48
REMARK 500 1 THR A 93 65.75 -114.72
REMARK 500 1 SER A 98 -90.58 -110.53
REMARK 500 1 TRP A 106 109.30 -46.37
REMARK 500 2 LYS A 7 114.79 130.25
REMARK 500 2 PRO A 37 -105.88 -76.41
REMARK 500 2 LEU A 55 -40.43 -138.34
REMARK 500 2 ASN A 65 71.63 -157.59
REMARK 500 2 TRP A 97 101.48 -51.98
REMARK 500 2 SER A 98 -78.61 -91.21
REMARK 500 2 PRO A 105 -164.58 -68.33
REMARK 500 3 PRO A 11 139.78 -38.78
REMARK 500 3 PRO A 23 49.33 -76.37
REMARK 500 3 ARG A 24 -19.48 -170.92
REMARK 500 3 PRO A 37 -151.47 -73.00
REMARK 500 3 PRO A 39 44.45 -74.89
REMARK 500 3 LEU A 44 100.39 53.03
REMARK 500 3 SER A 98 -104.50 -90.64
REMARK 500 4 PRO A 2 39.19 -89.41
REMARK 500 4 LEU A 53 48.98 -76.24
REMARK 500 4 ILE A 54 -25.92 -148.69
REMARK 500 4 ASN A 65 103.26 -163.14
REMARK 500 4 LYS A 87 148.52 -173.40
REMARK 500 4 SER A 98 -87.59 -90.43
REMARK 500 4 PRO A 105 -145.64 -67.52
REMARK 500 5 PRO A 2 48.66 -83.86
REMARK 500 5 ARG A 24 0.64 -151.31
REMARK 500 5 PRO A 37 -85.85 -54.90
REMARK 500 5 GLU A 40 -50.49 -124.22
REMARK 500 5 SER A 41 32.71 -96.04
REMARK 500 5 LEU A 55 -51.32 -133.40
REMARK 500 5 SER A 98 -81.71 -90.49
REMARK 500 6 LYS A 7 83.89 49.08
REMARK 500 6 PRO A 10 -74.61 -48.62
REMARK 500 6 PRO A 37 -81.66 -77.12
REMARK 500 6 PRO A 43 99.35 -65.30
REMARK 500 6 ASN A 65 51.56 -148.44
REMARK 500 6 ILE A 91 34.98 -144.50
REMARK 500 6 TRP A 97 103.95 -59.62
REMARK 500 6 SER A 98 -86.50 -91.13
REMARK 500 7 PRO A 37 -102.13 -68.24
REMARK 500 7 ILE A 54 -28.54 -153.52
REMARK 500 7 ASN A 65 62.32 -165.80
REMARK 500
REMARK 500 THIS ENTRY HAS 167 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
DBREF 1UC6 A 6 109 UNP P26992 CNTFR_HUMAN 202 305
SEQADV 1UC6 GLY A 1 UNP P26992 EXPRESSION TAG
SEQADV 1UC6 PRO A 2 UNP P26992 EXPRESSION TAG
SEQADV 1UC6 LEU A 3 UNP P26992 EXPRESSION TAG
SEQADV 1UC6 GLY A 4 UNP P26992 EXPRESSION TAG
SEQADV 1UC6 SER A 5 UNP P26992 EXPRESSION TAG
SEQADV 1UC6 ASN A 65 UNP P26992 ASP 261 CONFLICT
SEQRES 1 A 109 GLY PRO LEU GLY SER VAL LYS PRO ASP PRO PRO GLU ASN
SEQRES 2 A 109 VAL VAL ALA ARG PRO VAL PRO SER ASN PRO ARG ARG LEU
SEQRES 3 A 109 GLU VAL THR TRP GLN THR PRO SER THR TRP PRO ASP PRO
SEQRES 4 A 109 GLU SER PHE PRO LEU LYS PHE PHE LEU ARG TYR ARG PRO
SEQRES 5 A 109 LEU ILE LEU ASP GLN TRP GLN HIS VAL GLU LEU SER ASN
SEQRES 6 A 109 GLY THR ALA HIS THR ILE THR ASP ALA TYR ALA GLY LYS
SEQRES 7 A 109 GLU TYR ILE ILE GLN VAL ALA ALA LYS ASP ASN GLU ILE
SEQRES 8 A 109 GLY THR TRP SER ASP TRP SER VAL ALA ALA HIS ALA THR
SEQRES 9 A 109 PRO TRP THR GLU GLU
SHEET 1 A 3 GLU A 12 PRO A 18 0
SHEET 2 A 3 LEU A 26 GLN A 31 -1 O THR A 29 N VAL A 15
SHEET 3 A 3 ALA A 68 ILE A 71 -1 O HIS A 69 N VAL A 28
SHEET 1 B 4 VAL A 61 LEU A 63 0
SHEET 2 B 4 PHE A 46 PRO A 52 -1 N PHE A 46 O LEU A 63
SHEET 3 B 4 TYR A 80 ALA A 85 -1 O GLN A 83 N ARG A 49
SHEET 4 B 4 VAL A 99 ALA A 103 -1 O ALA A 103 N TYR A 80
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - r 2 2 Bytes