Header list of 1tlr.pdb file
Complete list - r 2 2 Bytes
HEADER RNA 11-SEP-97 1TLR
TITLE SOLUTION STRUCTURE OF TETRALOOP RECEPTOR RNA, NMR, 20 STRUCTURES
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: RNA TETRALOOP RECEPTOR (5'-R(GGCCUAAGACUUCGGUUAUGGCC)-3');
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: TLR;
COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 SYNTHETIC: YES
KEYWDS RIBONUCLEIC ACID, TETRALOOP RECEPTOR, GROUP I INTRON, GROUP II
KEYWDS 2 INTRON, RNA
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR S.E.BUTCHER,T.DIECKMANN,J.FEIGON
REVDAT 3 02-MAR-22 1TLR 1 REMARK
REVDAT 2 24-FEB-09 1TLR 1 VERSN
REVDAT 1 12-NOV-97 1TLR 0
JRNL AUTH S.E.BUTCHER,T.DIECKMANN,J.FEIGON
JRNL TITL SOLUTION STRUCTURE OF A GAAA TETRALOOP RECEPTOR RNA.
JRNL REF EMBO J. V. 16 7490 1997
JRNL REFN ISSN 0261-4189
JRNL PMID 9405377
JRNL DOI 10.1093/EMBOJ/16.24.7490
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : X-PLOR 3.1
REMARK 3 AUTHORS : BRUNGER
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN THE
REMARK 3 JRNL CITATION ABOVE.
REMARK 4
REMARK 4 1TLR COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 100 THE DEPOSITION ID IS D_1000176725.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 293
REMARK 210 PH : 6.0
REMARK 210 IONIC STRENGTH : NULL
REMARK 210 PRESSURE : NULL
REMARK 210 SAMPLE CONTENTS : NULL
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL
REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ
REMARK 210 SPECTROMETER MODEL : DRX
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : X-PLOR 3.0
REMARK 210 METHOD USED : DISTANCE GEOMETRY
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 100
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20
REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY STRUCTURES
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 HO2' A A 18 O5' U A 19 1.24
REMARK 500 O2' A A 18 H6 U A 19 1.33
REMARK 500 HO2' C A 13 O4' G A 14 1.35
REMARK 500 HO2' U A 12 O5' C A 13 1.36
REMARK 500 HO2' C A 4 O4' U A 5 1.47
REMARK 500 HO2' G A 8 O4' A A 9 1.51
REMARK 500 HO2' A A 6 O4' A A 7 1.53
REMARK 500 O2' G A 14 H5' G A 15 1.54
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION
REMARK 500 1 A A 9 O5' A A 9 C5' 0.115
REMARK 500 1 A A 9 C5' A A 9 C4' 0.076
REMARK 500 1 A A 9 C4' A A 9 C3' -0.068
REMARK 500 2 A A 9 O5' A A 9 C5' 0.116
REMARK 500 2 A A 9 C5' A A 9 C4' 0.081
REMARK 500 2 A A 9 C4' A A 9 C3' -0.066
REMARK 500 3 A A 9 O5' A A 9 C5' 0.115
REMARK 500 3 A A 9 C5' A A 9 C4' 0.078
REMARK 500 3 A A 9 C4' A A 9 C3' -0.068
REMARK 500 4 A A 9 O5' A A 9 C5' 0.115
REMARK 500 4 A A 9 C5' A A 9 C4' 0.080
REMARK 500 4 A A 9 C4' A A 9 C3' -0.066
REMARK 500 5 A A 9 O5' A A 9 C5' 0.116
REMARK 500 5 A A 9 C5' A A 9 C4' 0.075
REMARK 500 5 A A 9 C4' A A 9 C3' -0.069
REMARK 500 6 A A 9 O5' A A 9 C5' 0.117
REMARK 500 6 A A 9 C5' A A 9 C4' 0.080
REMARK 500 6 A A 9 C4' A A 9 C3' -0.068
REMARK 500 7 A A 9 O5' A A 9 C5' 0.114
REMARK 500 7 A A 9 C5' A A 9 C4' 0.080
REMARK 500 7 A A 9 C4' A A 9 C3' -0.067
REMARK 500 8 A A 9 O5' A A 9 C5' 0.115
REMARK 500 8 A A 9 C5' A A 9 C4' 0.077
REMARK 500 8 A A 9 C4' A A 9 C3' -0.068
REMARK 500 9 A A 9 O5' A A 9 C5' 0.114
REMARK 500 9 A A 9 C5' A A 9 C4' 0.077
REMARK 500 9 A A 9 C4' A A 9 C3' -0.069
REMARK 500 10 A A 9 O5' A A 9 C5' 0.114
REMARK 500 10 A A 9 C5' A A 9 C4' 0.076
REMARK 500 10 A A 9 C4' A A 9 C3' -0.067
REMARK 500 11 A A 9 O5' A A 9 C5' 0.115
REMARK 500 11 A A 9 C5' A A 9 C4' 0.081
REMARK 500 11 A A 9 C4' A A 9 C3' -0.068
REMARK 500 12 A A 9 O5' A A 9 C5' 0.115
REMARK 500 12 A A 9 C5' A A 9 C4' 0.081
REMARK 500 12 A A 9 C4' A A 9 C3' -0.068
REMARK 500 13 A A 9 O5' A A 9 C5' 0.115
REMARK 500 13 A A 9 C5' A A 9 C4' 0.081
REMARK 500 13 A A 9 C4' A A 9 C3' -0.069
REMARK 500 14 A A 9 O5' A A 9 C5' 0.116
REMARK 500 14 A A 9 C5' A A 9 C4' 0.079
REMARK 500 14 A A 9 C4' A A 9 C3' -0.071
REMARK 500 15 A A 9 O5' A A 9 C5' 0.115
REMARK 500 15 A A 9 C5' A A 9 C4' 0.078
REMARK 500 15 A A 9 C4' A A 9 C3' -0.068
REMARK 500 16 A A 9 O5' A A 9 C5' 0.115
REMARK 500 16 A A 9 C5' A A 9 C4' 0.077
REMARK 500 16 A A 9 C4' A A 9 C3' -0.070
REMARK 500 17 A A 9 O5' A A 9 C5' 0.114
REMARK 500 17 A A 9 C5' A A 9 C4' 0.077
REMARK 500
REMARK 500 THIS ENTRY HAS 60 BOND DEVIATIONS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 1 G A 1 C5 - N7 - C8 ANGL. DEV. = -3.9 DEGREES
REMARK 500 1 G A 1 N7 - C8 - N9 ANGL. DEV. = 6.9 DEGREES
REMARK 500 1 G A 1 C8 - N9 - C4 ANGL. DEV. = -3.8 DEGREES
REMARK 500 1 G A 2 C5 - N7 - C8 ANGL. DEV. = -4.0 DEGREES
REMARK 500 1 G A 2 N7 - C8 - N9 ANGL. DEV. = 6.9 DEGREES
REMARK 500 1 G A 2 C8 - N9 - C4 ANGL. DEV. = -3.8 DEGREES
REMARK 500 1 A A 6 C5 - N7 - C8 ANGL. DEV. = -3.9 DEGREES
REMARK 500 1 A A 6 N7 - C8 - N9 ANGL. DEV. = 6.4 DEGREES
REMARK 500 1 A A 6 C8 - N9 - C4 ANGL. DEV. = -3.3 DEGREES
REMARK 500 1 A A 7 C5 - N7 - C8 ANGL. DEV. = -3.9 DEGREES
REMARK 500 1 A A 7 N7 - C8 - N9 ANGL. DEV. = 6.3 DEGREES
REMARK 500 1 A A 7 C8 - N9 - C4 ANGL. DEV. = -3.1 DEGREES
REMARK 500 1 G A 8 O4' - C1' - N9 ANGL. DEV. = 6.1 DEGREES
REMARK 500 1 G A 8 C5 - N7 - C8 ANGL. DEV. = -4.1 DEGREES
REMARK 500 1 G A 8 N7 - C8 - N9 ANGL. DEV. = 6.3 DEGREES
REMARK 500 1 G A 8 C8 - N9 - C4 ANGL. DEV. = -3.5 DEGREES
REMARK 500 1 A A 9 O5' - C5' - C4' ANGL. DEV. = 16.8 DEGREES
REMARK 500 1 A A 9 P - O5' - C5' ANGL. DEV. = -23.9 DEGREES
REMARK 500 1 A A 9 C4' - C3' - O3' ANGL. DEV. = 20.8 DEGREES
REMARK 500 1 A A 9 C5 - N7 - C8 ANGL. DEV. = -3.5 DEGREES
REMARK 500 1 A A 9 N7 - C8 - N9 ANGL. DEV. = 6.4 DEGREES
REMARK 500 1 A A 9 C8 - N9 - C4 ANGL. DEV. = -4.0 DEGREES
REMARK 500 1 G A 14 O4' - C1' - N9 ANGL. DEV. = 4.6 DEGREES
REMARK 500 1 G A 14 C5 - N7 - C8 ANGL. DEV. = -4.0 DEGREES
REMARK 500 1 G A 14 N7 - C8 - N9 ANGL. DEV. = 7.1 DEGREES
REMARK 500 1 G A 14 C8 - N9 - C4 ANGL. DEV. = -3.9 DEGREES
REMARK 500 1 G A 15 C5 - N7 - C8 ANGL. DEV. = -4.0 DEGREES
REMARK 500 1 G A 15 N7 - C8 - N9 ANGL. DEV. = 7.0 DEGREES
REMARK 500 1 G A 15 C8 - N9 - C4 ANGL. DEV. = -3.7 DEGREES
REMARK 500 1 A A 18 C3' - C2' - C1' ANGL. DEV. = 5.1 DEGREES
REMARK 500 1 A A 18 C5 - N7 - C8 ANGL. DEV. = -3.7 DEGREES
REMARK 500 1 A A 18 N7 - C8 - N9 ANGL. DEV. = 6.2 DEGREES
REMARK 500 1 A A 18 C8 - N9 - C4 ANGL. DEV. = -3.3 DEGREES
REMARK 500 1 G A 20 C5 - N7 - C8 ANGL. DEV. = -3.9 DEGREES
REMARK 500 1 G A 20 N7 - C8 - N9 ANGL. DEV. = 6.9 DEGREES
REMARK 500 1 G A 20 C8 - N9 - C4 ANGL. DEV. = -3.8 DEGREES
REMARK 500 1 G A 21 C5 - N7 - C8 ANGL. DEV. = -3.9 DEGREES
REMARK 500 1 G A 21 N7 - C8 - N9 ANGL. DEV. = 6.8 DEGREES
REMARK 500 1 G A 21 C8 - N9 - C4 ANGL. DEV. = -3.8 DEGREES
REMARK 500 2 G A 1 C5 - N7 - C8 ANGL. DEV. = -4.0 DEGREES
REMARK 500 2 G A 1 N7 - C8 - N9 ANGL. DEV. = 7.0 DEGREES
REMARK 500 2 G A 1 C8 - N9 - C4 ANGL. DEV. = -3.8 DEGREES
REMARK 500 2 G A 2 C5 - N7 - C8 ANGL. DEV. = -3.9 DEGREES
REMARK 500 2 G A 2 N7 - C8 - N9 ANGL. DEV. = 6.8 DEGREES
REMARK 500 2 G A 2 C8 - N9 - C4 ANGL. DEV. = -3.8 DEGREES
REMARK 500 2 A A 6 C5 - N7 - C8 ANGL. DEV. = -3.8 DEGREES
REMARK 500 2 A A 6 N7 - C8 - N9 ANGL. DEV. = 6.3 DEGREES
REMARK 500 2 A A 6 C8 - N9 - C4 ANGL. DEV. = -3.4 DEGREES
REMARK 500 2 A A 7 C5 - N7 - C8 ANGL. DEV. = -3.9 DEGREES
REMARK 500 2 A A 7 N7 - C8 - N9 ANGL. DEV. = 6.3 DEGREES
REMARK 500
REMARK 500 THIS ENTRY HAS 781 ANGLE DEVIATIONS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: PLANAR GROUPS
REMARK 500
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS
REMARK 500 AN RMSD GREATER THAN THIS VALUE
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 M RES CSSEQI RMS TYPE
REMARK 500 1 A A 9 0.06 SIDE CHAIN
REMARK 500 2 A A 9 0.06 SIDE CHAIN
REMARK 500 3 G A 8 0.05 SIDE CHAIN
REMARK 500 3 A A 9 0.06 SIDE CHAIN
REMARK 500 4 A A 9 0.06 SIDE CHAIN
REMARK 500 5 A A 9 0.06 SIDE CHAIN
REMARK 500 5 C A 13 0.06 SIDE CHAIN
REMARK 500 6 A A 9 0.06 SIDE CHAIN
REMARK 500 7 A A 9 0.06 SIDE CHAIN
REMARK 500 8 A A 9 0.06 SIDE CHAIN
REMARK 500 9 A A 9 0.05 SIDE CHAIN
REMARK 500 10 A A 9 0.06 SIDE CHAIN
REMARK 500 11 A A 9 0.06 SIDE CHAIN
REMARK 500 12 A A 9 0.06 SIDE CHAIN
REMARK 500 13 A A 9 0.06 SIDE CHAIN
REMARK 500 14 A A 9 0.06 SIDE CHAIN
REMARK 500 15 A A 9 0.05 SIDE CHAIN
REMARK 500 16 A A 9 0.06 SIDE CHAIN
REMARK 500 17 A A 9 0.06 SIDE CHAIN
REMARK 500 18 A A 9 0.05 SIDE CHAIN
REMARK 500 18 G A 15 0.08 SIDE CHAIN
REMARK 500 19 A A 9 0.06 SIDE CHAIN
REMARK 500
REMARK 500 REMARK: NULL
DBREF 1TLR A 1 23 PDB 1TLR 1TLR 1 23
SEQRES 1 A 23 G G C C U A A G A C U U C
SEQRES 2 A 23 G G U U A U G G C C
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - r 2 2 Bytes