Header list of 1t2m.pdb file
Complete list - r 2 2 Bytes
HEADER PROTEIN BINDING 22-APR-04 1T2M
TITLE SOLUTION STRUCTURE OF THE PDZ DOMAIN OF AF-6
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: AF-6 PROTEIN;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: PDZ DOMAIN;
COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 TISSUE: BRAIN;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-22B(+)
KEYWDS CHROMOSOMAL TRANSLOCATION, PROTO-ONCOGENE, PROTEIN BINDING
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR H.ZHOU,J.H.WU,Y.Q.XU,A.D.HUANG,Y.Y.SHI
REVDAT 4 02-MAR-22 1T2M 1 REMARK SEQADV
REVDAT 3 24-FEB-09 1T2M 1 VERSN
REVDAT 2 19-APR-05 1T2M 1 JRNL
REVDAT 1 08-FEB-05 1T2M 0
JRNL AUTH H.ZHOU,Y.XU,Y.YANG,A.HUANG,J.WU,Y.SHI
JRNL TITL SOLUTION STRUCTURE OF AF-6 PDZ DOMAIN AND ITS INTERACTION
JRNL TITL 2 WITH THE C-TERMINAL PEPTIDES FROM NEUREXIN AND BCR
JRNL REF J.BIOL.CHEM. V. 280 13841 2005
JRNL REFN ISSN 0021-9258
JRNL PMID 15684424
JRNL DOI 10.1074/JBC.M411065200
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : NMRPIPE 2.2, CNS 1.1
REMARK 3 AUTHORS : F. DELAGLIO (NMRPIPE),
REMARK 3 BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE,JIANG,KUSZEWSKI,
REMARK 3 NILGES, PANNU,READ,RICE,SIMONSON,WARREN (CNS)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE WAS ALSO REFINED WITH CSI
REMARK 3 VERSION 1.0 (AUTHORS: DAVID S. WISHART)
REMARK 4
REMARK 4 1T2M COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-APR-04.
REMARK 100 THE DEPOSITION ID IS D_1000022233.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 298
REMARK 210 PH : 5.9
REMARK 210 IONIC STRENGTH : 50MM PHOSPHATE, 1MM EDTA
REMARK 210 PRESSURE : 1 ATM
REMARK 210 SAMPLE CONTENTS : 50MM PHOSPHATE BUFFER NA; 1MM
REMARK 210 EDTA; 90% H2O, 10% D2O
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N
REMARK 210 -SEPARATED_NOESY
REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ
REMARK 210 SPECTROMETER MODEL : DMX
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : CNS 1.1, MOLMOL 2K.2, SPARKY 3
REMARK 210 METHOD USED : SIMULATED ANNEALING, MOLECULAR
REMARK 210 DYNAMICS
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 200
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20
REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST
REMARK 210 ENERGY
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR
REMARK 210 SPECTROSCOPY
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465 MODELS 1-20
REMARK 465 RES C SSSEQI
REMARK 465 LEU A 94
REMARK 465 GLU A 95
REMARK 465 HIS A 96
REMARK 465 HIS A 97
REMARK 465 HIS A 98
REMARK 465 HIS A 99
REMARK 465 HIS A 100
REMARK 465 HIS A 101
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 ASN A 15 47.08 -163.40
REMARK 500 1 LYS A 31 -158.81 -122.10
REMARK 500 1 ARG A 50 -67.82 -106.26
REMARK 500 1 LEU A 58 -62.71 -109.07
REMARK 500 1 LEU A 65 51.19 -96.86
REMARK 500 2 PRO A 4 -166.20 -69.86
REMARK 500 2 ASN A 15 32.26 -152.87
REMARK 500 2 LYS A 31 -147.44 -123.66
REMARK 500 2 LEU A 58 -63.12 -108.25
REMARK 500 2 ARG A 79 56.81 -95.35
REMARK 500 2 GLN A 91 -165.78 -101.28
REMARK 500 3 LYS A 2 96.58 64.00
REMARK 500 3 GLU A 3 78.82 59.11
REMARK 500 3 GLN A 14 56.80 -92.82
REMARK 500 3 MET A 17 -68.34 -138.71
REMARK 500 3 LYS A 31 -155.43 -121.47
REMARK 500 3 ARG A 79 44.30 -92.71
REMARK 500 3 LYS A 90 87.95 -66.45
REMARK 500 3 GLN A 91 -168.16 -110.55
REMARK 500 4 LYS A 2 75.42 64.27
REMARK 500 4 GLU A 3 146.29 68.45
REMARK 500 4 GLN A 14 68.69 -101.04
REMARK 500 4 ARG A 79 65.10 -101.72
REMARK 500 4 LYS A 90 83.57 -66.83
REMARK 500 4 GLN A 91 -168.49 -108.02
REMARK 500 5 GLU A 3 98.05 61.94
REMARK 500 5 PRO A 4 -178.19 -59.93
REMARK 500 5 MET A 17 -59.11 -127.32
REMARK 500 5 LYS A 31 -151.54 -124.01
REMARK 500 5 LYS A 90 83.97 -66.20
REMARK 500 6 GLN A 14 73.16 -115.06
REMARK 500 6 MET A 17 -65.21 -100.72
REMARK 500 6 LEU A 58 -54.76 -145.18
REMARK 500 6 LYS A 90 91.56 -66.28
REMARK 500 6 GLN A 91 -165.87 -113.07
REMARK 500 7 ASN A 15 42.54 -160.32
REMARK 500 7 ASP A 30 37.26 -95.22
REMARK 500 7 LYS A 31 -148.50 -140.21
REMARK 500 7 LYS A 41 109.01 -59.58
REMARK 500 7 ARG A 50 -51.39 -144.10
REMARK 500 7 LEU A 58 -63.63 -95.18
REMARK 500 7 ARG A 79 58.02 -91.21
REMARK 500 8 ASN A 15 38.57 -164.91
REMARK 500 8 MET A 17 -66.47 -129.60
REMARK 500 8 LYS A 31 -154.38 -120.99
REMARK 500 8 ARG A 50 -51.03 -120.57
REMARK 500 8 VAL A 66 87.07 -67.58
REMARK 500 8 ARG A 79 49.18 -89.17
REMARK 500 8 GLN A 91 -169.90 -161.30
REMARK 500 9 ASN A 15 42.54 -166.21
REMARK 500
REMARK 500 THIS ENTRY HAS 132 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
DBREF 1T2M A 2 93 UNP P55196 AFAD_HUMAN 987 1077
SEQADV 1T2M MET A 1 UNP P55196 INITIATING METHIONINE
SEQADV 1T2M LEU A 94 UNP P55196 EXPRESSION TAG
SEQADV 1T2M GLU A 95 UNP P55196 EXPRESSION TAG
SEQADV 1T2M HIS A 96 UNP P55196 EXPRESSION TAG
SEQADV 1T2M HIS A 97 UNP P55196 EXPRESSION TAG
SEQADV 1T2M HIS A 98 UNP P55196 EXPRESSION TAG
SEQADV 1T2M HIS A 99 UNP P55196 EXPRESSION TAG
SEQADV 1T2M HIS A 100 UNP P55196 EXPRESSION TAG
SEQADV 1T2M HIS A 101 UNP P55196 EXPRESSION TAG
SEQRES 1 A 101 MET LYS GLU PRO GLU ILE ILE THR VAL THR LEU LYS LYS
SEQRES 2 A 101 GLN ASN GLY MET GLY LEU SER ILE VAL ALA ALA LYS GLY
SEQRES 3 A 101 ALA GLY GLN ASP LYS LEU GLY ILE TYR VAL LYS SER VAL
SEQRES 4 A 101 VAL LYS GLY GLY ALA ALA ASP VAL ASP GLY ARG LEU ALA
SEQRES 5 A 101 ALA GLY ASP GLN LEU LEU SER VAL ASP GLY ARG SER LEU
SEQRES 6 A 101 VAL GLY LEU SER GLN GLU ARG ALA ALA GLU LEU MET THR
SEQRES 7 A 101 ARG THR SER SER VAL VAL THR LEU GLU VAL ALA LYS GLN
SEQRES 8 A 101 GLY ALA LEU GLU HIS HIS HIS HIS HIS HIS
HELIX 1 1 GLY A 43 GLY A 49 1 7
HELIX 2 2 SER A 69 ARG A 79 1 11
SHEET 1 A 5 GLU A 5 LYS A 12 0
SHEET 2 A 5 VAL A 83 LYS A 90 -1 O VAL A 84 N LEU A 11
SHEET 3 A 5 ASP A 55 VAL A 60 -1 N GLN A 56 O ALA A 89
SHEET 4 A 5 GLY A 33 VAL A 39 -1 N VAL A 36 O ASP A 55
SHEET 5 A 5 LEU A 19 ALA A 24 -1 N VAL A 22 O TYR A 35
SHEET 1 B 4 GLU A 5 LYS A 12 0
SHEET 2 B 4 VAL A 83 LYS A 90 -1 O VAL A 84 N LEU A 11
SHEET 3 B 4 ASP A 55 VAL A 60 -1 N GLN A 56 O ALA A 89
SHEET 4 B 4 ARG A 63 SER A 64 -1 O ARG A 63 N VAL A 60
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - r 2 2 Bytes