Header list of 1sbu.pdb file
Complete list - 24 20 Bytes
HEADER TOXIN 11-FEB-04 1SBU
TITLE NMR STRUCTURE OF A PEPTIDE CONTAINING A DIMETYLTHIAZOLIDINE : AN
TITLE 2 ANALOG OF DELTA CONOTOXIN EVIA LOOP 2
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: DELTA-CONOTOXIN EVIA;
COMPND 3 CHAIN: A;
COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 SYNTHETIC: YES;
SOURCE 3 ORGANISM_SCIENTIFIC: CONUS ERMINEUS;
SOURCE 4 ORGANISM_COMMON: ATLANTIC FISH-HUNTING CONE;
SOURCE 5 ORGANISM_TAXID: 55423;
SOURCE 6 OTHER_DETAILS: THE SOLID PHASE SYNTHESIS OF THE PEPTIDE WAS CARRIED
SOURCE 7 OUT USING THE FMOC CHEMISTRY
KEYWDS CIS LEU-(DMT)THIAZOLIDINE AMIDE BOND, DIMETHYL-THIAZOLIDINE, VI BETA
KEYWDS 2 TURN, NMR SPECTROSCOPY, MOLECULAR DYNAMICS SIMULATIONS, TOXIN
EXPDTA SOLUTION NMR
NUMMDL 10
AUTHOR M.FIGUET,S.CHIERICI,M.JOURDAN,P.DUMY
REVDAT 5 24-JUN-20 1SBU 1 COMPND SOURCE REMARK DBREF
REVDAT 5 2 1 LINK
REVDAT 4 24-FEB-09 1SBU 1 VERSN
REVDAT 3 07-SEP-04 1SBU 1 JRNL
REVDAT 2 06-APR-04 1SBU 1 TITLE
REVDAT 1 24-FEB-04 1SBU 0
JRNL AUTH S.CHIERICI,M.JOURDAN,M.FIGUET,P.DUMY
JRNL TITL A CASE STUDY OF 2,2-DIMETHYLTHIAZOLIDINE AS LOCKED CIS
JRNL TITL 2 PROLINE AMIDE BOND: SYNTHESIS, NMR AND MOLECULAR MODELING
JRNL TITL 3 STUDIES OF A [SMALL DELTA]-CONOTOXIN EVIA PEPTIDE ANALOG.
JRNL REF ORG.BIOMOL.CHEM. V. 2 2437 2004
JRNL REFN ISSN 1477-0520
JRNL PMID 15326523
JRNL DOI 10.1039/B408325C
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : XWINNMR 2.6, IRMA 200
REMARK 3 AUTHORS : BOELENS R, KONING TMG, KAPTEIN R (IRMA)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: IRMA WAS USED TO REFINE THE STRUCTURE
REMARK 4
REMARK 4 1SBU COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-FEB-04.
REMARK 100 THE DEPOSITION ID IS D_1000021584.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 283
REMARK 210 PH : 3
REMARK 210 IONIC STRENGTH : NULL
REMARK 210 PRESSURE : 1 ATM
REMARK 210 SAMPLE CONTENTS : PEPTIDE CONCENTRATION : 2MM
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 2D TOCSY
REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ
REMARK 210 SPECTROMETER MODEL : AVANCE; UNITYPLUS
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : VNMR 2000 (6.1), FELIX 2000,
REMARK 210 DISCOVER 2.98
REMARK 210 METHOD USED : THE PEPTIDE WAS SUBJECTED TO
REMARK 210 SIMULATED ANNEALING RESTRAINTS
REMARK 210 MOLECULAR DYNAMICS USING THE
REMARK 210 CVFF FORCEFIELD
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 50
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10
REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST
REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES
REMARK 210 WITH THE LOWEST ENERGY
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION
REMARK 500 1 GLY A 11 C GLY A 11 OXT 0.143
REMARK 500 2 GLY A 11 C GLY A 11 OXT 0.143
REMARK 500 3 GLY A 11 C GLY A 11 OXT 0.143
REMARK 500 4 GLY A 11 C GLY A 11 OXT 0.142
REMARK 500 5 GLY A 11 C GLY A 11 OXT 0.143
REMARK 500 6 GLY A 11 C GLY A 11 OXT 0.143
REMARK 500 7 GLY A 11 C GLY A 11 OXT 0.143
REMARK 500 8 GLY A 11 C GLY A 11 OXT 0.143
REMARK 500 9 GLY A 11 C GLY A 11 OXT 0.143
REMARK 500 10 GLY A 11 C GLY A 11 OXT 0.144
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 2 LEU A 8 CB - CG - CD1 ANGL. DEV. = 10.5 DEGREES
REMARK 500 4 LEU A 8 CB - CG - CD1 ANGL. DEV. = 10.5 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 PHE A 2 88.93 -152.86
REMARK 500 2 PHE A 2 89.28 -157.57
REMARK 500 3 PHE A 2 87.89 -153.13
REMARK 500 4 PHE A 2 89.06 -156.74
REMARK 500 4 SER A 4 117.20 -161.98
REMARK 500 5 PHE A 2 86.71 -152.43
REMARK 500 6 PHE A 2 86.93 -152.13
REMARK 500 7 PHE A 2 89.03 -164.39
REMARK 500 7 SER A 4 137.59 -173.43
REMARK 500 7 LEU A 8 77.37 -105.38
REMARK 500 8 PHE A 2 86.88 -152.61
REMARK 500 9 PHE A 2 87.77 -153.74
REMARK 500 10 PHE A 2 87.46 -154.65
REMARK 500 10 SER A 4 121.82 -171.07
REMARK 500
REMARK 500 REMARK: NULL
DBREF 1SBU A 1 11 PDB 1SBU 1SBU 1 11
SEQRES 1 A 11 GLY PHE ALA SER LEU 2MT ILE LEU LYS ASN GLY
MODRES 1SBU 2MT A 6 PRO
HET 2MT A 6 18
HETNAM 2MT (4R)-2,2-DIMETHYL-1,3-THIAZOLIDINE-4-CARBOXYLIC ACID
HETSYN 2MT 2,2-DIMETHYLTHIAZOLIDINE-4-CARBOXYLIC ACID;(DMT)
HETSYN 2 2MT THIAZOLIDINE
FORMUL 1 2MT C6 H11 N O2 S
LINK C LEU A 5 N 2MT A 6 1555 1555 1.39
LINK C 2MT A 6 N ILE A 7 1555 1555 1.37
CISPEP 1 LEU A 5 2MT A 6 1 6.43
CISPEP 2 LEU A 5 2MT A 6 2 5.38
CISPEP 3 LEU A 5 2MT A 6 3 7.93
CISPEP 4 LEU A 5 2MT A 6 4 5.96
CISPEP 5 LEU A 5 2MT A 6 5 6.20
CISPEP 6 LEU A 5 2MT A 6 6 7.69
CISPEP 7 LEU A 5 2MT A 6 7 7.51
CISPEP 8 LEU A 5 2MT A 6 8 8.68
CISPEP 9 LEU A 5 2MT A 6 9 6.17
CISPEP 10 LEU A 5 2MT A 6 10 8.09
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - 24 20 Bytes