Header list of 1sb0.pdb file
Complete list - r 2 2 Bytes
HEADER TRANSCRIPTION 09-FEB-04 1SB0
TITLE SOLUTION STRUCTURE OF THE KIX DOMAIN OF CBP BOUND TO THE
TITLE 2 TRANSACTIVATION DOMAIN OF C-MYB
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: PROTEIN CBP;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: KIX DOMAIN;
COMPND 5 SYNONYM: CREB-BINDING PROTEIN;
COMPND 6 ENGINEERED: YES;
COMPND 7 MOL_ID: 2;
COMPND 8 MOLECULE: PROTEIN C-MYB;
COMPND 9 CHAIN: B;
COMPND 10 FRAGMENT: TRANSCRIPTIONAL ACTIVATION DOMAIN;
COMPND 11 SYNONYM: MYB PROTO-ONCOGENE PROTEIN;
COMPND 12 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS;
SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE;
SOURCE 4 ORGANISM_TAXID: 10090;
SOURCE 5 GENE: CBP;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) DNAY;
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET;
SOURCE 11 MOL_ID: 2;
SOURCE 12 ORGANISM_SCIENTIFIC: MUS MUSCULUS;
SOURCE 13 ORGANISM_COMMON: HOUSE MOUSE;
SOURCE 14 ORGANISM_TAXID: 10090;
SOURCE 15 GENE: C-MYB;
SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) DNAY;
SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: UBIQUITIN EXPRESSION VECTOR
KEYWDS CREB-BINDING PROTEIN; TRANSCRIPTIONAL ACTIVATION; CONSTITUTIVE
KEYWDS 2 ACTIVATION; LXXLL MOTIF; MYB; KIX, TRANSCRIPTION
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR T.ZOR,R.N.DE GUZMAN,H.J.DYSON,P.E.WRIGHT
REVDAT 3 02-MAR-22 1SB0 1 REMARK
REVDAT 2 24-FEB-09 1SB0 1 VERSN
REVDAT 1 13-APR-04 1SB0 0
JRNL AUTH T.ZOR,R.N.DE GUZMAN,H.J.DYSON,P.E.WRIGHT
JRNL TITL SOLUTION STRUCTURE OF THE KIX DOMAIN OF CBP BOUND TO THE
JRNL TITL 2 TRANSACTIVATION DOMAIN OF C-MYB
JRNL REF J.MOL.BIOL. V. 337 521 2004
JRNL REFN ISSN 0022-2836
JRNL PMID 15019774
JRNL DOI 10.1016/J.JMB.2004.01.038
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : DYANA 1.5, AMBER 7
REMARK 3 AUTHORS : PETER GUNTERT (DYANA), DAVID CASE ET AL. (AMBER)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 1SB0 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-FEB-04.
REMARK 100 THE DEPOSITION ID IS D_1000021568.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 27
REMARK 210 PH : 5.5
REMARK 210 IONIC STRENGTH : 50 MM
REMARK 210 PRESSURE : AMBIENT
REMARK 210 SAMPLE CONTENTS : 20 MM TRIS D11 ACETATE D4; 50 MM
REMARK 210 NACL; 2 MM NAN3; PH 5.5
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 2D TOCSY; 3D_13C
REMARK 210 -SEPARATED_NOESY; 3D_15N-
REMARK 210 SEPARATED_NOESY
REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ
REMARK 210 SPECTROMETER MODEL : AVANCE
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NMRPIPE, NMRVIEW 4.3.1
REMARK 210 METHOD USED : INITIAL STRUCTURES FROM DYANA
REMARK 210 AND REFINED IN AMBER
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 200
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20
REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST
REMARK 210 ENERGY
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 1 TYR A 73 CB - CG - CD1 ANGL. DEV. = -4.1 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 VAL A 2 -73.52 -81.05
REMARK 500 1 PRO A 28 81.43 -67.50
REMARK 500 1 GLU A 80 85.22 8.95
REMARK 500 1 LYS A 82 -75.05 -17.07
REMARK 500 1 SER A 85 -71.16 0.10
REMARK 500 1 THR B 102 -69.50 -24.54
REMARK 500 1 ALA B 111 -61.04 -135.21
REMARK 500 3 VAL A 2 47.81 -77.51
REMARK 500 3 PHE A 27 94.42 -165.81
REMARK 500 3 PRO A 28 105.50 -57.48
REMARK 500 3 GLU A 80 -86.62 23.13
REMARK 500 3 SER A 85 -77.66 -158.70
REMARK 500 4 ASN A 59 37.26 -77.73
REMARK 500 4 ARG A 83 -73.90 -96.37
REMARK 500 4 GLN B 110 34.96 -97.93
REMARK 500 5 ARG A 83 -158.05 -74.65
REMARK 500 5 ARG A 84 70.30 -66.06
REMARK 500 5 LYS B 107 -72.89 -37.14
REMARK 500 6 PHE A 27 88.79 -150.78
REMARK 500 6 SER A 85 -94.08 20.75
REMARK 500 7 ARG A 3 73.26 -162.55
REMARK 500 7 LYS A 4 28.95 -145.30
REMARK 500 7 ARG A 83 -106.00 -134.33
REMARK 500 7 GLN B 110 56.05 9.86
REMARK 500 8 GLU A 80 84.78 11.87
REMARK 500 8 ARG A 84 -60.14 -105.28
REMARK 500 8 GLU B 89 -71.30 -12.84
REMARK 500 8 THR B 102 -63.23 -19.74
REMARK 500 9 SER A 85 45.57 -75.56
REMARK 500 9 GLU B 89 -79.01 0.17
REMARK 500 10 VAL A 2 105.13 -44.19
REMARK 500 10 ARG A 3 -36.64 -158.78
REMARK 500 10 GLU A 8 -39.66 -35.66
REMARK 500 10 PHE A 27 95.15 -162.19
REMARK 500 10 PRO A 28 96.57 -51.91
REMARK 500 10 LYS A 36 49.37 -78.40
REMARK 500 10 GLU A 80 108.73 -38.56
REMARK 500 10 GLN B 109 52.62 29.82
REMARK 500 11 LYS A 4 17.64 -151.58
REMARK 500 11 GLU A 8 -46.28 -29.93
REMARK 500 11 PRO A 28 85.01 -66.72
REMARK 500 11 ASN A 59 47.73 -79.44
REMARK 500 11 SER A 60 145.85 173.34
REMARK 500 11 GLU B 89 -71.78 -10.09
REMARK 500 12 GLU A 80 77.79 -109.37
REMARK 500 12 GLU A 81 108.59 -19.60
REMARK 500 12 LYS A 82 -18.69 -30.59
REMARK 500 12 SER A 85 -111.80 46.60
REMARK 500 13 ARG A 3 -61.15 -28.77
REMARK 500 14 ARG A 3 -100.41 0.66
REMARK 500
REMARK 500 THIS ENTRY HAS 71 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: PLANAR GROUPS
REMARK 500
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS
REMARK 500 AN RMSD GREATER THAN THIS VALUE
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 M RES CSSEQI RMS TYPE
REMARK 500 1 TYR A 64 0.09 SIDE CHAIN
REMARK 500 1 TYR A 73 0.30 SIDE CHAIN
REMARK 500 1 ARG B 91 0.11 SIDE CHAIN
REMARK 500 2 TYR A 64 0.07 SIDE CHAIN
REMARK 500 2 TYR A 65 0.08 SIDE CHAIN
REMARK 500 2 TYR A 73 0.15 SIDE CHAIN
REMARK 500 3 TYR A 73 0.14 SIDE CHAIN
REMARK 500 4 TYR A 55 0.07 SIDE CHAIN
REMARK 500 4 TYR A 64 0.10 SIDE CHAIN
REMARK 500 4 TYR A 73 0.15 SIDE CHAIN
REMARK 500 5 ARG A 3 0.08 SIDE CHAIN
REMARK 500 5 ARG A 15 0.08 SIDE CHAIN
REMARK 500 5 TYR A 55 0.07 SIDE CHAIN
REMARK 500 5 TYR A 65 0.07 SIDE CHAIN
REMARK 500 5 TYR A 73 0.14 SIDE CHAIN
REMARK 500 6 TYR A 64 0.07 SIDE CHAIN
REMARK 500 6 TYR A 73 0.14 SIDE CHAIN
REMARK 500 7 ARG A 3 0.12 SIDE CHAIN
REMARK 500 7 ARG A 39 0.10 SIDE CHAIN
REMARK 500 7 TYR A 64 0.07 SIDE CHAIN
REMARK 500 7 TYR A 73 0.16 SIDE CHAIN
REMARK 500 8 TYR A 55 0.20 SIDE CHAIN
REMARK 500 8 TYR A 64 0.06 SIDE CHAIN
REMARK 500 9 TYR A 55 0.17 SIDE CHAIN
REMARK 500 9 TYR A 64 0.08 SIDE CHAIN
REMARK 500 9 TYR A 73 0.13 SIDE CHAIN
REMARK 500 10 TYR A 64 0.09 SIDE CHAIN
REMARK 500 10 TYR A 73 0.16 SIDE CHAIN
REMARK 500 11 PHE A 27 0.10 SIDE CHAIN
REMARK 500 11 TYR A 46 0.06 SIDE CHAIN
REMARK 500 11 TYR A 55 0.10 SIDE CHAIN
REMARK 500 11 TYR A 64 0.11 SIDE CHAIN
REMARK 500 11 TYR A 73 0.13 SIDE CHAIN
REMARK 500 11 ARG A 83 0.07 SIDE CHAIN
REMARK 500 12 TYR A 64 0.07 SIDE CHAIN
REMARK 500 12 TYR A 65 0.09 SIDE CHAIN
REMARK 500 12 TYR A 73 0.15 SIDE CHAIN
REMARK 500 13 TYR A 64 0.11 SIDE CHAIN
REMARK 500 13 TYR A 73 0.16 SIDE CHAIN
REMARK 500 14 TYR A 64 0.10 SIDE CHAIN
REMARK 500 14 TYR A 65 0.08 SIDE CHAIN
REMARK 500 14 TYR A 73 0.15 SIDE CHAIN
REMARK 500 15 ARG A 38 0.09 SIDE CHAIN
REMARK 500 15 TYR A 55 0.18 SIDE CHAIN
REMARK 500 15 TYR A 65 0.10 SIDE CHAIN
REMARK 500 15 TYR A 73 0.18 SIDE CHAIN
REMARK 500 16 TYR A 73 0.08 SIDE CHAIN
REMARK 500 17 TYR A 64 0.07 SIDE CHAIN
REMARK 500 17 TYR A 73 0.14 SIDE CHAIN
REMARK 500 18 PHE A 27 0.09 SIDE CHAIN
REMARK 500
REMARK 500 THIS ENTRY HAS 57 PLANE DEVIATIONS.
REMARK 500
REMARK 500 REMARK: NULL
DBREF 1SB0 A 1 87 UNP P45481 CBP_MOUSE 580 666
DBREF 1SB0 B 88 112 UNP P06876 MYB_MOUSE 291 315
SEQRES 1 A 87 GLY VAL ARG LYS GLY TRP HIS GLU HIS VAL THR GLN ASP
SEQRES 2 A 87 LEU ARG SER HIS LEU VAL HIS LYS LEU VAL GLN ALA ILE
SEQRES 3 A 87 PHE PRO THR PRO ASP PRO ALA ALA LEU LYS ASP ARG ARG
SEQRES 4 A 87 MET GLU ASN LEU VAL ALA TYR ALA LYS LYS VAL GLU GLY
SEQRES 5 A 87 ASP MET TYR GLU SER ALA ASN SER ARG ASP GLU TYR TYR
SEQRES 6 A 87 HIS LEU LEU ALA GLU LYS ILE TYR LYS ILE GLN LYS GLU
SEQRES 7 A 87 LEU GLU GLU LYS ARG ARG SER ARG LEU
SEQRES 1 B 25 LYS GLU LYS ARG ILE LYS GLU LEU GLU LEU LEU LEU MET
SEQRES 2 B 25 SER THR GLU ASN GLU LEU LYS GLY GLN GLN ALA LEU
HELIX 1 1 TRP A 6 VAL A 10 5 5
HELIX 2 2 THR A 11 PHE A 27 1 17
HELIX 3 3 ASP A 31 LYS A 36 5 6
HELIX 4 4 ASP A 37 ALA A 58 1 22
HELIX 5 5 SER A 60 GLU A 80 1 21
HELIX 6 6 LYS B 88 GLN B 109 1 22
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - r 2 2 Bytes