Header list of 1r21.pdb file
Complete list - r 2 2 Bytes
HEADER CELL CYCLE 25-SEP-03 1R21
TITLE SOLUTION STRUCTURE OF HUMAN KI67 FHA DOMAIN
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: ANTIGEN KI-67;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: FHA DOMAIN;
COMPND 5 SYNONYM: CELL PROLIFERATION ANTIGEN KI-67, LONG FORM; ANTIGEN
COMPND 6 IDENTIFIED BY MONOCLONAL ANTIBODY KI-67; PROLIFERATION-RELATED KI-67
COMPND 7 ANTIGEN;
COMPND 8 ENGINEERED: YES;
COMPND 9 MUTATION: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 CELLULAR_LOCATION: NUCLEUS;
SOURCE 6 GENE: MKI67;
SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3);
SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PEG
KEYWDS BETA SANDWICH, CELL CYCLE
EXPDTA SOLUTION NMR
NUMMDL 23
MDLTYP MINIMIZED AVERAGE
AUTHOR I.J.BYEON,H.LI,M.D.TSAI
REVDAT 3 02-MAR-22 1R21 1 REMARK SEQADV
REVDAT 2 24-FEB-09 1R21 1 VERSN
REVDAT 1 30-DEC-03 1R21 0
JRNL AUTH H.LI,I.J.BYEON,Y.JU,M.D.TSAI
JRNL TITL STRUCTURE OF HUMAN KI67 FHA DOMAIN AND ITS BINDING TO A
JRNL TITL 2 PHOSPHOPROTEIN FRAGMENT FROM HNIFK REVEAL UNIQUE RECOGNITION
JRNL TITL 3 SITES AND NEW VIEWS TO THE STRUCTURAL BASIS OF FHA DOMAIN
JRNL TITL 4 FUNCTIONS
JRNL REF J.MOL.BIOL. V. 335 371 2004
JRNL REFN ISSN 0022-2836
JRNL PMID 14659764
JRNL DOI 10.1016/J.JMB.2003.10.032
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : XWINNMR 2.6, X-PLOR NIH VERSION
REMARK 3 AUTHORS : BRUKER (XWINNMR), BRUNGER,SCHWIETERS, KUSZEWSKI,
REMARK 3 TJANDRA, CLORE (X-PLOR)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS:
REMARK 3 THE STRUCTURES ARE BASED ON A TOTAL OF 1921 CONSTRAINTS: 1694 FROM
REMARK 3 NOE,
REMARK 3 62 FROM H-BONDING, 165 FROM DIHEDRAL ANGLE CONSTRAINTS
REMARK 4
REMARK 4 1R21 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-OCT-03.
REMARK 100 THE DEPOSITION ID IS D_1000020341.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 290; 290
REMARK 210 PH : 8.4; 7.5
REMARK 210 IONIC STRENGTH : 0; 150 MM NACL
REMARK 210 PRESSURE : AMBIENT; AMBIENT
REMARK 210 SAMPLE CONTENTS : 0.5 MM U-13C,15N-PROTEIN; 10 MM
REMARK 210 TRISHCL BUFFER (PH 8.4); 2MM DTT;
REMARK 210 1 MM EDTA; 0.5 MM U-13C,15N-
REMARK 210 PROTEIN; 5 MM HEPES BUFFER (PH
REMARK 210 7.5); 2MM DTT; 1 MM EDTA; 150 MM
REMARK 210 NACL; 0.5 MM UNLABELED-PROTEIN;
REMARK 210 10 MM TRISHCL BUFFER (PH 8.4);
REMARK 210 2MM DTT; 1 MM EDTA; 0.5 MM
REMARK 210 UNLABELED-PROTEIN; 10 MM TRISHCL
REMARK 210 BUFFER (PH 8.4); 2MM DTT; 1 MM
REMARK 210 EDTA
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N
REMARK 210 -SEPARATED_NOESY; 2D NOESY
REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ
REMARK 210 SPECTROMETER MODEL : DRX; DMX
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : XWINNMR 2.6, X-PLOR NIH VERSION
REMARK 210 METHOD USED : SIMULATED ANNEALING
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 100
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 23
REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST
REMARK 210 ENERGY,TARGET FUNCTION
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR
REMARK 210 SPECTROSCOPY
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465 MODELS 1-23
REMARK 465 RES C SSSEQI
REMARK 465 GLY A -7
REMARK 465 SER A -6
REMARK 465 PRO A -5
REMARK 465 GLU A -4
REMARK 465 PHE A -3
REMARK 465 PRO A -2
REMARK 465 GLY A -1
REMARK 465 GLY A 0
REMARK 465 SER A 101
REMARK 465 LEU A 102
REMARK 465 GLN A 103
REMARK 465 ASN A 104
REMARK 465 GLY A 105
REMARK 465 ARG A 106
REMARK 465 LYS A 107
REMARK 465 SER A 108
REMARK 465 THR A 109
REMARK 465 GLU A 110
REMARK 465 PHE A 111
REMARK 465 PRO A 112
REMARK 465 ARG A 113
REMARK 465 LYS A 114
REMARK 465 ILE A 115
REMARK 465 ARG A 116
REMARK 465 GLU A 117
REMARK 465 GLN A 118
REMARK 465 GLU A 119
REMARK 465 PRO A 120
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 HD1 HIS A 84 H ASN A 99 1.32
REMARK 500 H LYS A 83 OD2 ASP A 86 1.40
REMARK 500 H GLU A 52 O ILE A 59 1.47
REMARK 500 H HIS A 54 O GLU A 57 1.54
REMARK 500 O ILE A 88 H PHE A 95 1.55
REMARK 500 O GLN A 70 H THR A 89 1.55
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 TRP A 2 77.68 -119.46
REMARK 500 1 THR A 4 93.22 37.62
REMARK 500 1 GLN A 56 13.27 -145.97
REMARK 500 1 ASN A 72 29.67 46.52
REMARK 500 1 ILE A 90 -146.55 -97.56
REMARK 500 1 ASP A 92 10.17 -142.65
REMARK 500 2 TRP A 2 70.49 -154.93
REMARK 500 2 SER A 13 36.28 35.19
REMARK 500 2 SER A 23 -43.00 -130.40
REMARK 500 2 ASN A 72 26.00 49.51
REMARK 500 2 ILE A 90 -150.46 -97.79
REMARK 500 2 ASP A 92 18.20 -143.47
REMARK 500 3 SER A 13 -127.52 44.39
REMARK 500 3 GLU A 34 -11.01 -48.00
REMARK 500 3 GLN A 56 21.73 -146.07
REMARK 500 3 ASN A 67 78.88 -119.62
REMARK 500 3 ILE A 90 -145.48 -94.34
REMARK 500 3 ASP A 92 17.91 -148.16
REMARK 500 4 TRP A 2 66.47 -167.97
REMARK 500 4 ARG A 12 -98.91 37.21
REMARK 500 4 GLU A 55 -68.27 -21.09
REMARK 500 4 GLN A 56 28.05 -146.17
REMARK 500 4 ASN A 67 79.78 -119.48
REMARK 500 4 ILE A 90 -147.34 -84.56
REMARK 500 4 ASP A 92 14.46 -142.73
REMARK 500 5 ARG A 12 25.04 33.62
REMARK 500 5 SER A 13 9.36 58.55
REMARK 500 5 GLU A 55 -19.09 -42.18
REMARK 500 5 SER A 65 -53.94 -129.76
REMARK 500 5 ILE A 90 -147.46 -87.83
REMARK 500 5 ASP A 92 19.92 -147.80
REMARK 500 6 ARG A 12 91.26 34.18
REMARK 500 6 SER A 13 105.48 -7.11
REMARK 500 6 GLU A 55 -61.04 -29.21
REMARK 500 6 GLN A 56 27.00 -145.09
REMARK 500 6 ASN A 72 18.83 50.68
REMARK 500 6 ILE A 90 -144.66 -91.67
REMARK 500 6 ASP A 92 14.19 -147.58
REMARK 500 7 ARG A 12 -139.65 -143.58
REMARK 500 7 GLN A 47 58.81 -117.16
REMARK 500 7 GLN A 56 22.83 -146.21
REMARK 500 7 ASN A 72 29.07 45.60
REMARK 500 7 GLU A 78 169.10 176.41
REMARK 500 7 ILE A 90 -146.64 -77.57
REMARK 500 7 ASP A 92 13.56 -142.80
REMARK 500 8 TRP A 2 148.54 56.79
REMARK 500 8 ARG A 12 -87.93 -143.93
REMARK 500 8 ASN A 72 14.96 46.14
REMARK 500 8 ILE A 90 -147.06 -80.86
REMARK 500 8 ASP A 92 20.50 -141.65
REMARK 500
REMARK 500 THIS ENTRY HAS 147 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
DBREF 1R21 A 1 120 UNP P46013 KI67_HUMAN 1 120
SEQADV 1R21 GLY A -7 UNP P46013 CLONING ARTIFACT
SEQADV 1R21 SER A -6 UNP P46013 CLONING ARTIFACT
SEQADV 1R21 PRO A -5 UNP P46013 CLONING ARTIFACT
SEQADV 1R21 GLU A -4 UNP P46013 CLONING ARTIFACT
SEQADV 1R21 PHE A -3 UNP P46013 CLONING ARTIFACT
SEQADV 1R21 PRO A -2 UNP P46013 CLONING ARTIFACT
SEQADV 1R21 GLY A -1 UNP P46013 CLONING ARTIFACT
SEQADV 1R21 GLY A 0 UNP P46013 CLONING ARTIFACT
SEQRES 1 A 128 GLY SER PRO GLU PHE PRO GLY GLY MET TRP PRO THR ARG
SEQRES 2 A 128 ARG LEU VAL THR ILE LYS ARG SER GLY VAL ASP GLY PRO
SEQRES 3 A 128 HIS PHE PRO LEU SER LEU SER THR CYS LEU PHE GLY ARG
SEQRES 4 A 128 GLY ILE GLU CYS ASP ILE ARG ILE GLN LEU PRO VAL VAL
SEQRES 5 A 128 SER LYS GLN HIS CYS LYS ILE GLU ILE HIS GLU GLN GLU
SEQRES 6 A 128 ALA ILE LEU HIS ASN PHE SER SER THR ASN PRO THR GLN
SEQRES 7 A 128 VAL ASN GLY SER VAL ILE ASP GLU PRO VAL ARG LEU LYS
SEQRES 8 A 128 HIS GLY ASP VAL ILE THR ILE ILE ASP ARG SER PHE ARG
SEQRES 9 A 128 TYR GLU ASN GLU SER LEU GLN ASN GLY ARG LYS SER THR
SEQRES 10 A 128 GLU PHE PRO ARG LYS ILE ARG GLU GLN GLU PRO
SHEET 1 A 6 VAL A 15 PRO A 21 0
SHEET 2 A 6 ARG A 5 ARG A 12 -1 N LEU A 7 O PHE A 20
SHEET 3 A 6 SER A 94 ASN A 99 -1 O ARG A 96 N VAL A 8
SHEET 4 A 6 ASP A 86 THR A 89 -1 N ILE A 88 O PHE A 95
SHEET 5 A 6 GLN A 70 VAL A 71 -1 N GLN A 70 O THR A 89
SHEET 6 A 6 SER A 74 VAL A 75 -1 O SER A 74 N VAL A 71
SHEET 1 B 5 ILE A 37 ARG A 38 0
SHEET 2 B 5 THR A 26 GLY A 30 1 N GLY A 30 O ILE A 37
SHEET 3 B 5 CYS A 49 ILE A 53 -1 O CYS A 49 N PHE A 29
SHEET 4 B 5 ALA A 58 LEU A 60 -1 O ILE A 59 N GLU A 52
SHEET 5 B 5 VAL A 80 ARG A 81 -1 O VAL A 80 N LEU A 60
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - r 2 2 Bytes