Header list of 1qu5.pdb file
Complete list - r 2 2 Bytes
HEADER TRANSFERASE 06-JUL-99 1QU5
TITLE NMR STRUCTURE OF A NEW PHOSPHOTYROSINE BINDING DOMAIN CONTAINING THE
TITLE 2 FHA2 DOMAIN OF RAD 53
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: PROTEIN KINASE SPK1;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: PHOSPHOTYROSINE-BINDING FHA2 DOMAIN;
COMPND 5 EC: 2.7.1.-;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE;
SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST;
SOURCE 4 ORGANISM_TAXID: 4932;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);
SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-4T
KEYWDS FHA, RAD53, TRANSFERASE
EXPDTA SOLUTION NMR
NUMMDL 16
MDLTYP MINIMIZED AVERAGE
AUTHOR I.-J.L.BYEON,H.LIAO,M.-D.TSAI
REVDAT 6 02-MAR-22 1QU5 1 REMARK
REVDAT 5 24-FEB-09 1QU5 1 VERSN
REVDAT 4 01-APR-03 1QU5 1 JRNL
REVDAT 3 17-JAN-01 1QU5 1 JRNL
REVDAT 2 13-DEC-00 1QU5 1 AUTHOR JRNL SOURCE
REVDAT 1 17-DEC-99 1QU5 0
JRNL AUTH H.LIAO,I.J.BYEON,M.D.TSAI
JRNL TITL STRUCTURE AND FUNCTION OF A NEW PHOSPHOPEPTIDE-BINDING
JRNL TITL 2 DOMAIN CONTAINING THE FHA2 OF RAD53.
JRNL REF J.MOL.BIOL. V. 294 1041 1999
JRNL REFN ISSN 0022-2836
JRNL PMID 10588905
JRNL DOI 10.1006/JMBI.1999.3313
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : X-PLOR 3.1
REMARK 3 AUTHORS : BRUNGER, A. T.
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS:
REMARK 3 IN THE FIRST STAGE, THE SIMULATED ANNEALING STRUCTURES WERE
REMARK 3 DETERMINED BASED
REMARK 3 ON THE EXPERIMENTAL INTER PROTON DISTANCE RESTRAINTS (2651 IN
REMARK 3 TOTAL). THE
REMARK 3 RESULTING STRUCTURES WERE THEN USED AS INITIAL STRCUTURES FOR THE
REMARK 3 SECOND STAGE
REMARK 3 OF SIMULATED ANNEALING CALCULATIONS WHERE, IN ADDITION TO THE
REMARK 3 DISTANCE
REMARK 3 RESTRAINTS, THE STRUCTURES WERE REFINED AGAINST SECONDARY
REMARK 3 13C(ALPHA)/13C(BETA)
REMARK 3 CHEMICAL SHIFT RESTRAINTS.
REMARK 4
REMARK 4 1QU5 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUL-99.
REMARK 100 THE DEPOSITION ID IS D_1000009296.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 293
REMARK 210 PH : 6.5
REMARK 210 IONIC STRENGTH : 0.2
REMARK 210 PRESSURE : AMBIENT
REMARK 210 SAMPLE CONTENTS : 0.2~0.5 MM FHA2, U-15N, 13C; 100
REMARK 210 MM SODIUM PHOSPHATE, 1MM DTT,
REMARK 210 1MM EDTA; 0.2~0.5 MM FHA2, U-15N,
REMARK 210 13C, 2H (~70%) TRIPLE LABELED;
REMARK 210 100 MM PHOSPHATE, 1MM DTT, 1MM
REMARK 210 EDTA
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N
REMARK 210 -SEPARATED_NOESY; 4D_13C-
REMARK 210 SEPARATED_NOESY; HCCH-TOCSY; 15N-
REMARK 210 1H-TROSY-HN(CO)CACB; 15N-1H-
REMARK 210 TROSY-HNCACB
REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ
REMARK 210 SPECTROMETER MODEL : DRX; DMX
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : XWINNMR 2.1, FELIX 98
REMARK 210 METHOD USED : SIMULATED ANNEALING, MOLECULAR
REMARK 210 DYNAMICS
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 32
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 16
REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST
REMARK 210 ENERGY
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK:
REMARK 210 THE STRUCTURAL DETERMINATION WAS BENEFITED BY THE TROSY TYPE
REMARK 210 EXPERIMENTS ON
REMARK 210 THE TRIPLE-LABLED (13C, 15N, 2H) SAMPLE.
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O LEU A 580 H LEU A 592 1.50
REMARK 500 O SER A 560 H THR A 563 1.53
REMARK 500 O ASN A 562 H ASN A 565 1.58
REMARK 500 O LYS A 634 HG SER A 635 1.60
REMARK 500 H LYS A 669 O LEU A 717 1.60
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 ALA A 550 -37.62 -169.74
REMARK 500 1 ARG A 553 108.78 109.84
REMARK 500 1 GLU A 554 97.65 65.46
REMARK 500 1 GLN A 555 -78.06 -170.47
REMARK 500 1 LEU A 557 -72.42 -121.13
REMARK 500 1 LEU A 558 172.85 171.52
REMARK 500 1 HIS A 559 170.98 46.62
REMARK 500 1 SER A 560 144.28 -14.62
REMARK 500 1 ASN A 561 -112.14 2.31
REMARK 500 1 THR A 563 25.82 41.21
REMARK 500 1 GLU A 564 24.90 46.33
REMARK 500 1 ASN A 565 64.84 39.02
REMARK 500 1 SER A 568 110.49 72.07
REMARK 500 1 LYS A 571 -78.39 -163.58
REMARK 500 1 LYS A 572 109.12 44.78
REMARK 500 1 PHE A 577 -39.60 -133.91
REMARK 500 1 GLN A 589 108.30 -165.13
REMARK 500 1 GLU A 590 -121.60 159.67
REMARK 500 1 GLN A 596 47.97 23.45
REMARK 500 1 VAL A 598 -35.48 -35.24
REMARK 500 1 ASN A 599 89.22 46.26
REMARK 500 1 CYS A 611 -138.96 -140.75
REMARK 500 1 LYS A 612 117.51 -176.75
REMARK 500 1 GLU A 614 71.14 10.14
REMARK 500 1 SER A 619 37.88 -92.65
REMARK 500 1 ARG A 620 117.56 66.55
REMARK 500 1 ALA A 631 93.53 60.04
REMARK 500 1 VAL A 632 161.46 -42.25
REMARK 500 1 SER A 635 163.74 105.91
REMARK 500 1 MET A 636 -111.43 44.72
REMARK 500 1 TYR A 637 165.79 49.95
REMARK 500 1 GLU A 638 -61.56 -129.94
REMARK 500 1 PRO A 640 -152.51 -66.26
REMARK 500 1 ALA A 641 50.03 -152.62
REMARK 500 1 LEU A 644 -174.18 54.07
REMARK 500 1 ASN A 655 -141.16 -102.74
REMARK 500 1 ASN A 660 -62.51 66.85
REMARK 500 1 GLN A 666 154.43 55.69
REMARK 500 1 TRP A 682 96.67 -162.52
REMARK 500 1 LYS A 687 75.38 47.96
REMARK 500 1 PHE A 688 88.05 -153.48
REMARK 500 1 ILE A 690 63.19 -109.69
REMARK 500 1 ASP A 698 -71.98 -87.00
REMARK 500 1 THR A 699 18.77 58.52
REMARK 500 1 THR A 700 -75.75 -49.42
REMARK 500 1 ASN A 704 11.44 57.89
REMARK 500 1 GLU A 705 26.51 47.06
REMARK 500 1 LEU A 707 28.47 -169.87
REMARK 500 1 MET A 709 63.08 -69.98
REMARK 500 1 GLU A 712 79.08 -175.43
REMARK 500
REMARK 500 THIS ENTRY HAS 799 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: PLANAR GROUPS
REMARK 500
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS
REMARK 500 AN RMSD GREATER THAN THIS VALUE
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 M RES CSSEQI RMS TYPE
REMARK 500 1 ARG A 553 0.28 SIDE CHAIN
REMARK 500 1 ARG A 576 0.31 SIDE CHAIN
REMARK 500 1 ARG A 605 0.26 SIDE CHAIN
REMARK 500 1 ARG A 617 0.30 SIDE CHAIN
REMARK 500 1 ARG A 620 0.32 SIDE CHAIN
REMARK 500 1 ARG A 629 0.17 SIDE CHAIN
REMARK 500 1 ARG A 663 0.32 SIDE CHAIN
REMARK 500 1 ARG A 714 0.27 SIDE CHAIN
REMARK 500 2 ARG A 553 0.10 SIDE CHAIN
REMARK 500 2 ARG A 576 0.26 SIDE CHAIN
REMARK 500 2 ARG A 605 0.28 SIDE CHAIN
REMARK 500 2 ARG A 617 0.28 SIDE CHAIN
REMARK 500 2 ARG A 629 0.31 SIDE CHAIN
REMARK 500 2 ARG A 663 0.16 SIDE CHAIN
REMARK 500 2 ARG A 714 0.32 SIDE CHAIN
REMARK 500 3 ARG A 553 0.31 SIDE CHAIN
REMARK 500 3 ARG A 576 0.31 SIDE CHAIN
REMARK 500 3 ARG A 605 0.30 SIDE CHAIN
REMARK 500 3 ARG A 617 0.29 SIDE CHAIN
REMARK 500 3 ARG A 620 0.21 SIDE CHAIN
REMARK 500 3 ARG A 629 0.20 SIDE CHAIN
REMARK 500 3 ARG A 663 0.29 SIDE CHAIN
REMARK 500 3 ARG A 714 0.30 SIDE CHAIN
REMARK 500 4 ARG A 553 0.31 SIDE CHAIN
REMARK 500 4 ARG A 576 0.32 SIDE CHAIN
REMARK 500 4 ARG A 605 0.23 SIDE CHAIN
REMARK 500 4 ARG A 617 0.13 SIDE CHAIN
REMARK 500 4 ARG A 620 0.31 SIDE CHAIN
REMARK 500 4 ARG A 663 0.20 SIDE CHAIN
REMARK 500 4 ARG A 714 0.31 SIDE CHAIN
REMARK 500 5 ARG A 553 0.24 SIDE CHAIN
REMARK 500 5 ARG A 576 0.31 SIDE CHAIN
REMARK 500 5 ARG A 605 0.21 SIDE CHAIN
REMARK 500 5 ARG A 617 0.32 SIDE CHAIN
REMARK 500 5 ARG A 620 0.32 SIDE CHAIN
REMARK 500 5 ARG A 629 0.24 SIDE CHAIN
REMARK 500 5 ARG A 663 0.32 SIDE CHAIN
REMARK 500 5 ARG A 714 0.26 SIDE CHAIN
REMARK 500 6 ARG A 553 0.28 SIDE CHAIN
REMARK 500 6 ARG A 576 0.30 SIDE CHAIN
REMARK 500 6 ARG A 617 0.31 SIDE CHAIN
REMARK 500 6 ARG A 620 0.31 SIDE CHAIN
REMARK 500 6 ARG A 629 0.19 SIDE CHAIN
REMARK 500 6 ARG A 663 0.24 SIDE CHAIN
REMARK 500 6 ARG A 714 0.31 SIDE CHAIN
REMARK 500 7 ARG A 553 0.27 SIDE CHAIN
REMARK 500 7 ARG A 576 0.27 SIDE CHAIN
REMARK 500 7 ARG A 605 0.16 SIDE CHAIN
REMARK 500 7 ARG A 617 0.26 SIDE CHAIN
REMARK 500 7 ARG A 620 0.18 SIDE CHAIN
REMARK 500
REMARK 500 THIS ENTRY HAS 118 PLANE DEVIATIONS.
REMARK 500
REMARK 500 REMARK: NULL
DBREF 1QU5 A 549 730 UNP P22216 RAD53_YEAST 549 730
SEQRES 1 A 182 GLU ALA GLU THR ARG GLU GLN LYS LEU LEU HIS SER ASN
SEQRES 2 A 182 ASN THR GLU ASN VAL LYS SER SER LYS LYS LYS GLY ASN
SEQRES 3 A 182 GLY ARG PHE LEU THR LEU LYS PRO LEU PRO ASP SER ILE
SEQRES 4 A 182 ILE GLN GLU SER LEU GLU ILE GLN GLN GLY VAL ASN PRO
SEQRES 5 A 182 PHE PHE ILE GLY ARG SER GLU ASP CYS ASN CYS LYS ILE
SEQRES 6 A 182 GLU ASP ASN ARG LEU SER ARG VAL HIS CYS PHE ILE PHE
SEQRES 7 A 182 LYS LYS ARG HIS ALA VAL GLY LYS SER MET TYR GLU SER
SEQRES 8 A 182 PRO ALA GLN GLY LEU ASP ASP ILE TRP TYR CYS HIS THR
SEQRES 9 A 182 GLY THR ASN VAL SER TYR LEU ASN ASN ASN ARG MET ILE
SEQRES 10 A 182 GLN GLY THR LYS PHE LEU LEU GLN ASP GLY ASP GLU ILE
SEQRES 11 A 182 LYS ILE ILE TRP ASP LYS ASN ASN LYS PHE VAL ILE GLY
SEQRES 12 A 182 PHE LYS VAL GLU ILE ASN ASP THR THR GLY LEU PHE ASN
SEQRES 13 A 182 GLU GLY LEU GLY MET LEU GLN GLU GLN ARG VAL VAL LEU
SEQRES 14 A 182 LYS GLN THR ALA GLU GLU LYS ASP LEU VAL LYS LYS LEU
HELIX 1 1 ASN A 562 VAL A 566 5 5
HELIX 2 2 LYS A 684 LYS A 687 5 4
HELIX 3 3 LEU A 702 GLY A 706 5 5
HELIX 4 4 THR A 720 VAL A 727 1 8
HELIX 5 5 LYS A 728 LEU A 730 5 3
SHEET 1 A 2 LEU A 578 LEU A 580 0
SHEET 2 A 2 VAL A 694 ILE A 696 -1 O GLU A 695 N THR A 579
SHEET 1 B 5 PHE A 601 ILE A 603 0
SHEET 2 B 5 CYS A 623 LYS A 628 -1 N CYS A 623 O ILE A 603
SHEET 3 B 5 ASP A 646 TYR A 649 -1 O ASP A 646 N LYS A 628
SHEET 4 B 5 THR A 668 LEU A 671 -1 N PHE A 670 O TYR A 649
SHEET 5 B 5 LEU A 717 LYS A 718 -1 O LEU A 717 N LYS A 669
SHEET 1 C 2 TYR A 658 LEU A 659 0
SHEET 2 C 2 ASN A 662 ARG A 663 -1 O ASN A 662 N LEU A 659
SHEET 1 D 2 LYS A 679 ASP A 683 0
SHEET 2 D 2 PHE A 688 GLY A 691 -1 O PHE A 688 N ASP A 683
CISPEP 1 ASN A 599 PRO A 600 1 -1.63
CISPEP 2 ASN A 599 PRO A 600 2 -1.52
CISPEP 3 ASN A 599 PRO A 600 3 -1.64
CISPEP 4 ASN A 599 PRO A 600 4 -2.50
CISPEP 5 ASN A 599 PRO A 600 5 -1.96
CISPEP 6 ASN A 599 PRO A 600 6 -0.46
CISPEP 7 ASN A 599 PRO A 600 7 -1.31
CISPEP 8 ASN A 599 PRO A 600 8 -2.27
CISPEP 9 ASN A 599 PRO A 600 9 -1.37
CISPEP 10 ASN A 599 PRO A 600 10 -1.88
CISPEP 11 ASN A 599 PRO A 600 11 -1.84
CISPEP 12 ASN A 599 PRO A 600 12 -2.38
CISPEP 13 ASN A 599 PRO A 600 13 -2.48
CISPEP 14 ASN A 599 PRO A 600 14 -2.34
CISPEP 15 ASN A 599 PRO A 600 15 -1.47
CISPEP 16 ASN A 599 PRO A 600 16 -1.86
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - r 2 2 Bytes