Header list of 1qq3.pdb file
Complete list - 3 20 Bytes
HEADER ELECTRON TRANSPORT 10-JUN-99 1QQ3
TITLE THE SOLUTION STRUCTURE OF THE HEME BINDING VARIANT ARG98CYS OF
TITLE 2 OXIDIZED ESCHERICHIA COLI CYTOCHROME B562
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: CYTOCHROME B562;
COMPND 3 CHAIN: A;
COMPND 4 ENGINEERED: YES;
COMPND 5 MUTATION: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI;
SOURCE 3 ORGANISM_TAXID: 562;
SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PCEB562
KEYWDS FOUR HELIX BUNDLE, HEMOPROTEIN, ELECTRON TRANSPORT
EXPDTA SOLUTION NMR
MDLTYP MINIMIZED AVERAGE
AUTHOR F.ARNESANO,L.BANCI,I.BERTINI,S.CIOFI-BAFFONI,P.D.BARKER,T.WOODYEAR
REVDAT 4 03-NOV-21 1QQ3 1 REMARK SEQADV LINK
REVDAT 3 24-FEB-09 1QQ3 1 VERSN
REVDAT 2 01-APR-03 1QQ3 1 JRNL
REVDAT 1 24-MAY-00 1QQ3 0
JRNL AUTH F.ARNESANO,L.BANCI,I.BERTINI,S.CIOFI-BAFFONI,T.L.WOODYEAR,
JRNL AUTH 2 C.M.JOHNSON,P.D.BARKER
JRNL TITL STRUCTURAL CONSEQUENCES OF B- TO C-TYPE HEME CONVERSION IN
JRNL TITL 2 OXIDIZED ESCHERICHIA COLI CYTOCHROME B562.
JRNL REF BIOCHEMISTRY V. 39 1499 2000
JRNL REFN ISSN 0006-2960
JRNL PMID 10684632
JRNL DOI 10.1021/BI991831O
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : XWINNMR, AMBER 5.0
REMARK 3 AUTHORS : PEARLMAN, D.A., CASE, D.A., CALDWELL, J.W., ROSS,
REMARK 3 W.S., CHEATHAM, T.E., FERGUSON, D.M., SEIBEL, G.L.,
REMARK 3 SINGH, U.C., WEINER, P.K., & KOLLMAN, P.A. (AMBER)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: A TOTAL OF 4325 NOESY CROSS-PEAKS WAS
REMARK 3 ASSIGNED, INTEGRATED AND TRANSFORMED IN UPPER DISTANCE LIMITS;
REMARK 3 23 DISTANCE CONSTRAINTS WERE DERIVED FROM 1D NOE EXPERIMENTS
REMARK 3 INVOLVING FAST RELAXING PARAMAGNETIC SHIFTED SIGNALS. TOTALLY,
REMARK 3 THEY CORRESPONDED TO 2595 UPPER DISTANCE LIMITS, OF WHICH 2145
REMARK 3 WERE FOUND TO BE MEANINGFUL. IN ADDITION, 45 3JHNHA COUPLINGS
REMARK 3 OBTAINED FROM THE HNHA 3D SPECTRUM AND 397 PCS WERE USED FOR THE
REMARK 3 STRUCTURE CALCULATIONS.
REMARK 4
REMARK 4 1QQ3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JUN-99.
REMARK 100 THE DEPOSITION ID IS D_1000009166.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 298; 298
REMARK 210 PH : 4.8; 4.8
REMARK 210 IONIC STRENGTH : 500MM PHOSPHATE; 500MM PHOSPHATE
REMARK 210 PRESSURE : AMBIENT; AMBIENT
REMARK 210 SAMPLE CONTENTS : 3MM R98C CYTOCHROME B562; 500MM
REMARK 210 PHOSPHATE BUFFER; 90% H2O, 10%
REMARK 210 D2O; 2.5MM R98C CYTOCHROME B562;
REMARK 210 500MM PHOSPHATE BUFFER; 90% H2O,
REMARK 210 10% D2O
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 3D_15N
REMARK 210 -SEPARATED_NOESY; HNHA; 1D NOE
REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ
REMARK 210 SPECTROMETER MODEL : AVANCE
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : DYANA 1.5, XEASY, PSEUDODYANA
REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS FOLLOWED
REMARK 210 BY ENERGY MINIMIZATION
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1
REMARK 210 CONFORMERS, SELECTION CRITERIA : ENERGY MINIMIZED AVERAGE
REMARK 210 STRUCTURE
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 HB1 ALA A 1 OD2 ASP A 39 1.57
REMARK 500 CB ALA A 1 OD2 ASP A 39 1.99
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION
REMARK 500 ALA A 1 CA ALA A 1 CB -0.436
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASP A 21 -39.58 -132.59
REMARK 500 PRO A 56 20.71 -75.18
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 HEB A 107 FE
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 MET A 7 SD
REMARK 620 2 HEB A 107 NA 84.0
REMARK 620 3 HEB A 107 NB 98.6 90.1
REMARK 620 4 HEB A 107 NC 95.4 177.6 92.3
REMARK 620 5 HEB A 107 ND 81.2 90.6 179.2 87.0
REMARK 620 6 HIS A 102 NE2 171.3 87.5 82.9 93.1 97.4
REMARK 620 N 1 2 3 4 5
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEB A 107
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 1QPU RELATED DB: PDB
REMARK 900 1QPU CONTAINS THE SOLUTION STRUCTURE OF WILD-TYPE OXIDIZED
REMARK 900 ESCHERICHIA COLI CYTOCHROME B562
DBREF 1QQ3 A 1 106 UNP P0ABE7 C562_ECOLI 23 128
SEQADV 1QQ3 CYS A 98 UNP P0ABE7 ARG 120 ENGINEERED MUTATION
SEQRES 1 A 106 ALA ASP LEU GLU ASP ASN MET GLU THR LEU ASN ASP ASN
SEQRES 2 A 106 LEU LYS VAL ILE GLU LYS ALA ASP ASN ALA ALA GLN VAL
SEQRES 3 A 106 LYS ASP ALA LEU THR LYS MET ARG ALA ALA ALA LEU ASP
SEQRES 4 A 106 ALA GLN LYS ALA THR PRO PRO LYS LEU GLU ASP LYS SER
SEQRES 5 A 106 PRO ASP SER PRO GLU MET LYS ASP PHE ARG HIS GLY PHE
SEQRES 6 A 106 ASP ILE LEU VAL GLY GLN ILE ASP ASP ALA LEU LYS LEU
SEQRES 7 A 106 ALA ASN GLU GLY LYS VAL LYS GLU ALA GLN ALA ALA ALA
SEQRES 8 A 106 GLU GLN LEU LYS THR THR CYS ASN ALA TYR HIS GLN LYS
SEQRES 9 A 106 TYR ARG
HET HEB A 107 74
HETNAM HEB HEME B/C
HETSYN HEB HYBRID BETWEEN B AND C TYPE HEMES (PROTOPORPHYRIN IX
HETSYN 2 HEB CONTAINING FE)
FORMUL 2 HEB C34 H34 FE N4 O4
HELIX 1 1 ASP A 2 LYS A 19 1 18
HELIX 2 2 ASN A 22 GLN A 41 1 20
HELIX 3 3 PRO A 45 GLU A 49 5 5
HELIX 4 4 GLU A 57 GLU A 81 1 25
HELIX 5 5 LYS A 83 GLN A 103 1 21
LINK SG CYS A 98 CAB HEB A 107 1555 1555 1.78
LINK SD MET A 7 FE HEB A 107 1555 1555 2.32
LINK NE2 HIS A 102 FE HEB A 107 1555 1555 2.00
SITE 1 AC1 12 MET A 7 LEU A 14 PRO A 45 PRO A 46
SITE 2 AC1 12 PHE A 61 GLY A 64 PHE A 65 LEU A 68
SITE 3 AC1 12 CYS A 98 HIS A 102 TYR A 105 ARG A 106
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
Complete list - 3 20 Bytes