Header list of 1q2n.pdb file
Complete list - 27 20 Bytes
HEADER IMMUNE SYSTEM 25-JUL-03 1Q2N
TITLE REFINED SOLUTION NMR STRUCTURE OF THE Z DOMAIN OF STAPHYLOCOCCAL
TITLE 2 PROTEIN A
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: IMMUNOGLOBULIN G BINDING PROTEIN A;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: RESIDUES 212-269;
COMPND 5 SYNONYM: IGG BINDING PROTEIN A;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS;
SOURCE 3 ORGANISM_TAXID: 1280;
SOURCE 4 CELLULAR_LOCATION: CELL WALL;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 7 EXPRESSION_SYSTEM_STRAIN: RV308;
SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PDHZ
KEYWDS IMMUNOGLOBULIN-BINDING PROTEIN, THREE-HELICAL BUNDLE STRUCTURE,
KEYWDS 2 RESIDUAL DIPOLAR COUPLINGS, IMMUNE SYSTEM
EXPDTA SOLUTION NMR
NUMMDL 10
AUTHOR D.ZHENG,M.TASHIRO,J.M.ARAMINI,G.T.MONTELIONE
REVDAT 4 27-OCT-21 1Q2N 1 REMARK SEQADV
REVDAT 3 24-FEB-09 1Q2N 1 VERSN
REVDAT 2 02-MAR-04 1Q2N 1 JRNL
REVDAT 1 12-AUG-03 1Q2N 0
JRNL AUTH D.ZHENG,J.M.ARAMINI,G.T.MONTELIONE
JRNL TITL VALIDATION OF HELICAL TILT ANGLES IN THE SOLUTION NMR
JRNL TITL 2 STRUCTURE OF THE Z DOMAIN OF STAPHYLOCOCCAL PROTEIN A BY
JRNL TITL 3 COMBINED ANALYSIS OF RESIDUAL DIPOLAR COUPLING AND NOE DATA.
JRNL REF PROTEIN SCI. V. 13 549 2004
JRNL REFN ISSN 0961-8368
JRNL PMID 14718654
JRNL DOI 10.1110/PS.03351704
REMARK 1
REMARK 1 REFERENCE 1
REMARK 1 AUTH L.JENDEBERG,M.TASHIRO,R.TEJERO,B.A.LYONS,M.UHLEN,
REMARK 1 AUTH 2 G.T.MONTELIONE,B.NILSSON
REMARK 1 TITL THE MECHANISM OF BINDING STAPHYLOCOCCAL PROTEIN A TO
REMARK 1 TITL 2 IMMUNOGLOBIN G DOES NOT INVOLVE HELIX UNWINDING
REMARK 1 REF BIOCHEMISTRY V. 35 22 1996
REMARK 1 REFN ISSN 0006-2960
REMARK 1 DOI 10.1021/BI9512814
REMARK 1 REFERENCE 2
REMARK 1 AUTH M.TASHIRO,G.T.MONTELIONE
REMARK 1 TITL STRUCTURES OF BACTERIAL IMMUNOGLOBULIN-BINDING DOMAINS AND
REMARK 1 TITL 2 THEIR COMPLEXES WITH IMMUNOGLOBULIN
REMARK 1 REF CURR.OPIN.STRUCT.BIOL. V. 5 471 1995
REMARK 1 REFN ISSN 0959-440X
REMARK 1 DOI 10.1016/0959-440X(95)80031-X
REMARK 1 REFERENCE 3
REMARK 1 AUTH B.A.LYONS,M.TASHIRO,L.CEDERGREN,B.NILSSON,G.T.MONTELIONE
REMARK 1 TITL AN IMPROVED STRATEGY FOR DETERMINING RESONANCE ASSIGNMENTS
REMARK 1 TITL 2 FOR ISOTOPICALLY ENRICHED PROTEINS AND ITS APPLICATION TO AN
REMARK 1 TITL 3 ENGINEERED DOMAIN OF STAPHYLOCOCCAL PROTEIN A
REMARK 1 REF BIOCHEMISTRY V. 32 7839 1993
REMARK 1 REFN ISSN 0006-2960
REMARK 1 REFERENCE 4
REMARK 1 AUTH M.TASHIRO,R.TEJERO,D.E.ZIMMERMAN,B.CELDA,B.NILSSON,
REMARK 1 AUTH 2 G.T.MONTELIONE
REMARK 1 TITL HIGH RESOLUTION SOLUTION NMR STRUCTURE OF THE Z DOMAIN OF
REMARK 1 TITL 2 STAPHYLOCOCCAL PROTEIN A
REMARK 1 REF J.MOL.BIOL. V. 272 573 1997
REMARK 1 REFN ISSN 0022-2836
REMARK 1 DOI 10.1006/JMBI.1997.1265
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : CNS 1.0
REMARK 3 AUTHORS : BRUNGER, A.T.
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL OF
REMARK 3 769 CONFORMATIONAL RESTRAINTS. SUMMARY OF EXPERIMENTAL
REMARK 3 CONSTRAINTS: DISTANCE CONSTRAINTS: TOTAL = 536; INTRA-RESIDUE [I=
REMARK 3 J] = 224; SEQUENTIAL [(I-J)=1] = 142; MEDIUM RANGE [1<(I-J)<5]
REMARK 3 105; LONG RANGE [(I-J)>=5] = 65; NUMBER OF DISTANCE CONSTRAINTS
REMARK 3 RESIDUE = 9.2; DIHEDRAL-ANGLE CONSTRAINTS = 107 RESIDUAL DIPOLAR
REMARK 3 COUPLING CONSTRAINTS = 126 (34 N-H, 43 HA-CA, 4 TOTAL NUMBER OF
REMARK 3 CONSTRAINTS PER RESIDUE = 13.3; NUMBER OF LONG RANGE CONSTRAINTS
REMARK 3 PER RESIDUE = 3.3; NUMBER OF STRUCTURES COMPUTED = 100; NUMBER
REMARK 3 OF STRUCTURES USED = 10. AVERAGE RESIDUAL CONSTRAINT VIOLATIONS:
REMARK 3 DISTANCE VIOLATIONS 0.1-0.2 ANG = 7.7, 0. 0.8, >0.5 ANG = 0.3.
REMARK 3 AVERAGE R.M.S. DISTANCE VIOLATION = 0.03 AN AVERAGE DIHEDRAL
REMARK 3 ANGLE VIOLATIONS: >0 DEG = 0; RMSD VALUES: BACKBONE ATOMS (N,C,C'
REMARK 3 ) = 1.2 ANG; BACKBONE ATOMS(N,C,C') OF ORDERED RESIDUES = 0.4
REMARK 3 ANG; ALL HEAVY = 1.7 ANG; ALL HEAVY ATOMS OF ORDERED RESIDUES =
REMARK 3 1.0 ANG. PROCHECK USING ORDERED RESIDUES (5-36,39-57): MOST
REMARK 3 FAVORED REGIONS = 91.4%; ADDITIONAL ALLOWED REGIONS = 8.4%;
REMARK 3 GENEROUSLY ALLOWED REGIONS = 0.2%; DISALLOWED REGIONS = 0%.
REMARK 4
REMARK 4 1Q2N COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-AUG-03.
REMARK 100 THE DEPOSITION ID IS D_1000019838.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 303.00
REMARK 210 PH : 6.50
REMARK 210 IONIC STRENGTH : 20 MM NH4OAC
REMARK 210 PRESSURE : 1 ATM
REMARK 210 SAMPLE CONTENTS : 1MM Z DOMAIN U-15N,13C; 20MM
REMARK 210 NH4OAC BUFFER; 95% H2O, 5% D2O.
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL
REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ
REMARK 210 SPECTROMETER MODEL : MODIFIED UNITY 500
REMARK 210 SPECTROMETER MANUFACTURER : VARIAN
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : CNS 1.0
REMARK 210 METHOD USED : SIMULATED ANNEALING WITH
REMARK 210 RESTRAINED MOLECULAR DYNAMICS,
REMARK 210 PROTOCAL USED: ANNEAL.INP
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 100
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10
REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST
REMARK 210 ENERGY
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: NMR EXPERIMENTS CONDUCTED: 2D PFG-[15N]HSQC, 3D PFG-HNCO,
REMARK 210 3D PFG-(HA)CA(CO)NH, 3D PFG-HA(CA)(CO)NH, 3D PFG-HA(CA)NH, 3D
REMARK 210 PFG-CBCANH, 3D PFG-CBCA(CO)NH, 3D PFG- (HA)CANH, 3D PFG-HN(CA)CO,
REMARK 210 3D PFG-HCCNH-TOCSY, 3D PFG-HCC (CO)NH-TOCSY, 2D [15N]HSQC-IPAP,
REMARK 210 3D CA-COUPLED HNCO
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 LYS A 4 -82.33 -93.74
REMARK 500 1 GLN A 40 31.11 -95.60
REMARK 500 2 ASP A 2 -89.50 -56.34
REMARK 500 2 ASN A 3 -164.25 -160.09
REMARK 500 2 LYS A 4 -88.90 -87.03
REMARK 500 2 PRO A 38 -135.44 -55.10
REMARK 500 2 GLN A 40 31.62 -84.23
REMARK 500 2 PRO A 57 173.42 -52.75
REMARK 500 3 LYS A 4 45.19 -100.04
REMARK 500 3 PRO A 38 -134.68 -54.61
REMARK 500 3 GLN A 40 41.23 -80.47
REMARK 500 4 ASP A 2 -174.27 -67.74
REMARK 500 4 ASN A 3 -123.00 -69.94
REMARK 500 5 ASN A 3 48.44 -94.54
REMARK 500 5 LYS A 4 61.56 -100.04
REMARK 500 5 ALA A 56 106.62 -53.48
REMARK 500 6 ASP A 2 -172.42 -69.59
REMARK 500 6 PHE A 5 -164.43 -76.31
REMARK 500 7 LYS A 4 -84.66 -51.75
REMARK 500 7 PRO A 38 -136.97 -55.80
REMARK 500 8 PRO A 38 -155.87 -50.40
REMARK 500 8 GLN A 40 33.98 -77.48
REMARK 500 9 ASN A 3 -143.19 -108.31
REMARK 500 9 LYS A 4 -147.70 -100.04
REMARK 500 9 GLU A 25 -72.57 -54.13
REMARK 500 10 LYS A 4 -124.98 -65.52
REMARK 500 10 PHE A 5 -172.07 -69.91
REMARK 500 10 ASN A 6 -104.65 -149.85
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 2SPZ RELATED DB: PDB
DBREF 1Q2N A 1 58 UNP P38507 SPA2_STAAU 212 269
SEQADV 1Q2N VAL A 1 UNP P38507 ALA 212 ENGINEERED MUTATION
SEQADV 1Q2N ALA A 29 UNP P38507 GLY 240 ENGINEERED MUTATION
SEQRES 1 A 58 VAL ASP ASN LYS PHE ASN LYS GLU GLN GLN ASN ALA PHE
SEQRES 2 A 58 TYR GLU ILE LEU HIS LEU PRO ASN LEU ASN GLU GLU GLN
SEQRES 3 A 58 ARG ASN ALA PHE ILE GLN SER LEU LYS ASP ASP PRO SER
SEQRES 4 A 58 GLN SER ALA ASN LEU LEU ALA GLU ALA LYS LYS LEU ASN
SEQRES 5 A 58 ASP ALA GLN ALA PRO LYS
HELIX 1 1 ASN A 6 HIS A 18 1 13
HELIX 2 2 ASN A 23 ASP A 37 1 15
HELIX 3 3 GLN A 40 GLN A 55 1 16
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - 27 20 Bytes