Header list of 1pa4.pdb file
Complete list - b 23 2 Bytes
HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 13-MAY-03 1PA4
TITLE SOLUTION STRUCTURE OF A PUTATIVE RIBOSOME-BINDING FACTOR FROM
TITLE 2 MYCOPLASMA PNEUMONIAE (MPN156)
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: PROBABLE RIBOSOME-BINDING FACTOR A;
COMPND 3 CHAIN: A;
COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: MYCOPLASMA PNEUMONIAE;
SOURCE 3 ORGANISM_TAXID: 2104;
SOURCE 4 GENE: MPN156;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);
SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PSKB3
KEYWDS RIBOSOME-BINDING FACTOR, STRUCTURAL GENOMICS, DISTANT HOMOLOGY, BSGC
KEYWDS 2 STRUCTURE FUNDED BY NIH, PROTEIN STRUCTURE INITIATIVE, PSI, BERKELEY
KEYWDS 3 STRUCTURAL GENOMICS CENTER, UNKNOWN FUNCTION
EXPDTA SOLUTION NMR
NUMMDL 16
AUTHOR S.M.RUBIN,J.G.PELTON,H.YOKOTA,R.KIM,D.E.WEMMER,BERKELEY STRUCTURAL
AUTHOR 2 GENOMICS CENTER (BSGC)
REVDAT 5 23-FEB-22 1PA4 1 REMARK
REVDAT 4 24-FEB-09 1PA4 1 VERSN
REVDAT 3 25-JAN-05 1PA4 1 AUTHOR KEYWDS REMARK
REVDAT 2 24-AUG-04 1PA4 1 KEYWDS
REVDAT 1 02-MAR-04 1PA4 0
JRNL AUTH S.M.RUBIN,J.G.PELTON,H.YOKOTA,R.KIM,D.E.WEMMER
JRNL TITL SOLUTION STRUCTURE OF A PUTATIVE RIBOSOME BINDING PROTEIN
JRNL TITL 2 FROM MYCOPLASMA PNEUMONIAE AND COMPARISON TO A DISTANT
JRNL TITL 3 HOMOLOG.
JRNL REF J.STRUCT.FUNCT.GENOM. V. 4 235 2003
JRNL REFN ISSN 1345-711X
JRNL PMID 15185964
JRNL DOI 10.1023/B:JSFG.0000016127.57320.82
REMARK 1
REMARK 1 REFERENCE 1
REMARK 1 AUTH Y.J.HUANG,G.V.SWAPNA,P.K.RAJAN,H.KE,B.XIA,K.SHUKLA,M.INOUYE,
REMARK 1 AUTH 2 G.T.MONTELIONE
REMARK 1 TITL SOLUTION NMR STRUCTURE OF RIBOSOME-BINDING FACTOR A (RBFA),
REMARK 1 TITL 2 A COLD-SHOCK ADAPTATION PROTEIN FROM ESCHERICHIA COLI
REMARK 1 REF J.MOL.BIOL. V. 327 521 2003
REMARK 1 REFN ISSN 0022-2836
REMARK 1 DOI 10.1016/S0022-2836(03)00061-5
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : NMRPIPE 1, DYANA 1.5
REMARK 3 AUTHORS : DELAGLIO (NMRPIPE), GUNTERT (DYANA)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN THE
REMARK 3 PRIMARY CITATION ABOVE.
REMARK 4
REMARK 4 1PA4 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-MAY-03.
REMARK 100 THE DEPOSITION ID IS D_1000019197.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 298
REMARK 210 PH : 6.6
REMARK 210 IONIC STRENGTH : 50 MM NACL
REMARK 210 PRESSURE : 1 ATM
REMARK 210 SAMPLE CONTENTS : ~1 MM MPN156 U-15N; ~1 MM MPN156
REMARK 210 U-15N,U-13C
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 4D_13C
REMARK 210 -SEPARATED_NOESY; 4D_13C/15N-
REMARK 210 SEPARATED_NOESY; HNHA; H/D
REMARK 210 EXCHANGE
REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ
REMARK 210 SPECTROMETER MODEL : DRX
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NMRVIEW 5.0.4
REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 200
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 16
REMARK 210 CONFORMERS, SELECTION CRITERIA : SUBMITTED CONFORMERS ARE THOSE
REMARK 210 WITH LOWEST DYANA TARGET
REMARK 210 FUNCTIONS.
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: DEPOSITED STRUCTURES INCLUDE RESIDUES 6-101
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465 MODELS 1-16
REMARK 465 RES C SSSEQI
REMARK 465 MET A 1
REMARK 465 ALA A 2
REMARK 465 SER A 3
REMARK 465 TYR A 4
REMARK 465 LYS A 5
REMARK 465 ARG A 102
REMARK 465 ILE A 103
REMARK 465 GLU A 104
REMARK 465 SER A 105
REMARK 465 ILE A 106
REMARK 465 ILE A 107
REMARK 465 ASN A 108
REMARK 465 SER A 109
REMARK 465 LEU A 110
REMARK 465 LYS A 111
REMARK 465 LYS A 112
REMARK 465 SER A 113
REMARK 465 LYS A 114
REMARK 465 PRO A 115
REMARK 465 ASN A 116
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 GLU A 7 -75.80 -168.49
REMARK 500 1 ARG A 8 -168.79 49.09
REMARK 500 1 VAL A 21 -30.22 -38.57
REMARK 500 1 HIS A 23 -7.59 90.99
REMARK 500 1 ILE A 25 88.89 70.29
REMARK 500 1 TYR A 26 122.05 -37.80
REMARK 500 1 ASN A 27 94.35 59.44
REMARK 500 1 GLU A 28 121.53 -35.96
REMARK 500 1 THR A 29 -67.80 -146.51
REMARK 500 1 HIS A 34 85.98 82.32
REMARK 500 1 HIS A 37 -64.39 -145.53
REMARK 500 1 VAL A 38 90.66 40.19
REMARK 500 1 ASP A 42 -69.32 82.12
REMARK 500 1 ASP A 43 -53.25 -169.84
REMARK 500 1 LEU A 44 18.87 -149.89
REMARK 500 1 LEU A 51 137.64 63.22
REMARK 500 1 ASP A 52 73.50 -152.99
REMARK 500 1 CYS A 53 -148.74 -71.06
REMARK 500 1 ASN A 55 35.02 -167.51
REMARK 500 1 ARG A 56 -0.51 78.44
REMARK 500 1 ASN A 80 -79.10 -102.32
REMARK 500 1 LEU A 81 -163.52 -76.90
REMARK 500 1 TYR A 82 71.17 -173.74
REMARK 500 1 ALA A 84 -70.08 -53.48
REMARK 500 1 ALA A 86 -43.96 -159.53
REMARK 500 1 GLN A 88 142.95 158.25
REMARK 500 1 ASP A 94 67.47 -167.73
REMARK 500 1 ALA A 96 -46.37 84.43
REMARK 500 1 ILE A 97 -44.59 -156.83
REMARK 500 1 ASN A 99 -151.87 -162.09
REMARK 500 2 GLU A 7 94.09 -166.96
REMARK 500 2 ARG A 8 -104.54 -61.86
REMARK 500 2 HIS A 23 27.51 -150.35
REMARK 500 2 TYR A 26 95.58 -35.04
REMARK 500 2 ASN A 27 131.02 81.99
REMARK 500 2 GLU A 28 61.61 -67.88
REMARK 500 2 THR A 29 -76.00 -87.76
REMARK 500 2 HIS A 37 43.42 -161.02
REMARK 500 2 ASP A 42 15.22 82.92
REMARK 500 2 ASP A 43 -32.57 89.45
REMARK 500 2 LEU A 44 -30.82 168.67
REMARK 500 2 LEU A 45 -38.17 -35.22
REMARK 500 2 LEU A 51 140.32 68.75
REMARK 500 2 CYS A 53 -160.74 -60.70
REMARK 500 2 ASN A 55 -43.76 -167.58
REMARK 500 2 ARG A 56 -36.39 -177.54
REMARK 500 2 ASN A 67 43.81 -77.75
REMARK 500 2 GLN A 68 -27.67 176.04
REMARK 500 2 TYR A 82 112.36 56.88
REMARK 500 2 ALA A 84 -39.33 -37.19
REMARK 500
REMARK 500 THIS ENTRY HAS 497 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 650
REMARK 650 HELIX
REMARK 650 DETERMINATION METHOD: AUTHOR
REMARK 700
REMARK 700 SHEET
REMARK 700 DETERMINATION METHOD: AUTHOR
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 5796 RELATED DB: BMRB
REMARK 900 RESONANCE ASSIGNMENTS FOR MPN156
REMARK 900 RELATED ID: 1KKG RELATED DB: PDB
REMARK 900 RIBOSOME-BINDING FACTOR A FROM E. COLI
REMARK 900 RELATED ID: BSGCAIR30410 RELATED DB: TARGETDB
DBREF 1PA4 A 1 116 UNP P75589 RBFA_MYCPN 1 116
SEQRES 1 A 116 MET ALA SER TYR LYS LYS GLU ARG LEU GLU ASN ASP ILE
SEQRES 2 A 116 ILE ARG LEU ILE ASN ARG THR VAL ILE HIS GLU ILE TYR
SEQRES 3 A 116 ASN GLU THR VAL LYS THR GLY HIS VAL THR HIS VAL LYS
SEQRES 4 A 116 LEU SER ASP ASP LEU LEU HIS VAL THR VAL TYR LEU ASP
SEQRES 5 A 116 CYS TYR ASN ARG GLU GLN ILE ASP ARG VAL VAL GLY ALA
SEQRES 6 A 116 PHE ASN GLN ALA LYS GLY VAL PHE SER ARG VAL LEU ALA
SEQRES 7 A 116 HIS ASN LEU TYR LEU ALA LYS ALA VAL GLN ILE HIS PHE
SEQRES 8 A 116 VAL LYS ASP LYS ALA ILE ASP ASN ALA MET ARG ILE GLU
SEQRES 9 A 116 SER ILE ILE ASN SER LEU LYS LYS SER LYS PRO ASN
HELIX 1 1 ARG A 8 ILE A 22 1 15
HELIX 2 2 VAL A 30 THR A 32 1 3
HELIX 3 3 ILE A 59 GLN A 68 1 10
HELIX 4 4 LYS A 70 ASN A 80 1 11
SHEET 1 A 3 HIS A 34 SER A 41 0
SHEET 2 A 3 HIS A 46 ASP A 52 -1 O HIS A 46 N SER A 41
SHEET 3 A 3 GLN A 88 VAL A 92 1 O HIS A 90 N VAL A 49
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - b 23 2 Bytes