Header list of 1p5p.pdb file
Complete list - 23 20 Bytes
HEADER RNA 27-APR-03 1P5P
TITLE SOLUTION STRUCTURE OF HCV IRES DOMAIN II (MINIMIZED AVERAGE STRUCTURE)
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: 77-MER;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: HCV IRES DOMAIN II (RESIDUES 45-117);
COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 SYNTHETIC: YES;
SOURCE 3 OTHER_DETAILS: SYNTHESIZED BY IN VITRO TRANSCRIPTION FROM LINEARIZED
SOURCE 4 PLASMID DNA USING T7 RNA POLYMERASE
KEYWDS RIBONUCLEIC ACID, HEPATITIS C VIRUS, INTERNAL RIBOSOME ENTRY SITE,
KEYWDS 2 TRNA, LOOP E MOTIF, HAIRPIN LOOP, RNA
EXPDTA SOLUTION NMR
MDLTYP MINIMIZED AVERAGE
AUTHOR P.J.LUKAVSKY,I.KIM,G.A.OTTO,J.D.PUGLISI
REVDAT 4 23-FEB-22 1P5P 1 REMARK
REVDAT 3 24-FEB-09 1P5P 1 VERSN
REVDAT 2 30-MAR-04 1P5P 1 JRNL
REVDAT 1 04-NOV-03 1P5P 0
JRNL AUTH P.J.LUKAVSKY,I.KIM,G.A.OTTO,J.D.PUGLISI
JRNL TITL STRUCTURE OF HCV IRES DOMAIN II DETERMINED BY NMR.
JRNL REF NAT.STRUCT.BIOL. V. 10 1033 2003
JRNL REFN ISSN 1072-8368
JRNL PMID 14578934
JRNL DOI 10.1038/NSB1004
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : VNMR 6.1C, X-PLOR 3.1, CNS 1.1, PALES 1
REMARK 3 AUTHORS : VARIAN (VNMR), BRUNGER, A.T. (X-PLOR), BRUNGER,
REMARK 3 A.T. ET AL (CNS), ZWECKSTETTER, M. & BAX, A.
REMARK 3 (PALES)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: SEE REFERENCE ABOVE
REMARK 4
REMARK 4 1P5P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAY-03.
REMARK 100 THE DEPOSITION ID IS D_1000019039.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 288; 298; 303
REMARK 210 PH : 6.40; 6.40; 6.40
REMARK 210 IONIC STRENGTH : 100MM NACL, 5MM MGCL2; 100MM
REMARK 210 NACL, 5MM MGCL2; 100MM NACL, 5MM
REMARK 210 MGCL2
REMARK 210 PRESSURE : AMBIENT; AMBIENT; AMBIENT
REMARK 210 SAMPLE CONTENTS : 0.5-1.5MM HCV IRES DOMAIN II RNA
REMARK 210 10MM PHOSPHATE BUFFER 100MM
REMARK 210 SODIUM CHLORIDE 5MM MAGNESIUM
REMARK 210 CHLORIDE; 0.5-1.5MM HCV IRES
REMARK 210 DOMAIN II RNA 10MM PHOSPHATE
REMARK 210 BUFFER 100MM SODIUM CHLORIDE 5MM
REMARK 210 MAGNESIUM CHLORIDE; 0.5-1.5MM
REMARK 210 HCV IRES DOMAIN II RNA U-15N,13C
REMARK 210 10MM PHOSPHATE BUFFER 100MM
REMARK 210 SODIUM CHLORIDE 5MM MAGNESIUM
REMARK 210 CHLORIDE; 0.5-1.5MM HCV IRES
REMARK 210 DOMAIN II RNA U-15N,13C 10MM
REMARK 210 PHOSPHATE BUFFER 100MM SODIUM
REMARK 210 CHLORIDE 5MM MAGNESIUM CHLORIDE
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D S-NOESY; 2D NOESY; DQF-COSY;
REMARK 210 2D HP-COSY; 3D_13C-SEPARATED_
REMARK 210 NOESY; 3D HCP; 3D HMQC-TOCSY
REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 800 MHZ
REMARK 210 SPECTROMETER MODEL : INOVA
REMARK 210 SPECTROMETER MANUFACTURER : VARIAN
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : SPARKY 3
REMARK 210 METHOD USED : SEE REFERENCE ABOVE
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 200
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1
REMARK 210 CONFORMERS, SELECTION CRITERIA : MINIMIZED AVERAGE STRUCTURE
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: THE STRUCTURE WAS SOLVED USING TRIPLE RESONANCE,
REMARK 210 MULTIDIMENSIONAL NMR SPECTROSCOPY AND TROSY-TYPE EXPERIMENTS TO
REMARK 210 MEASURE RESIDUAL DIPOLAR COUPLINGS
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
DBREF 1P5P A 1 77 PDB 1P5P 1P5P 1 77
SEQRES 1 A 77 G G C U G U G A G G A A C
SEQRES 2 A 77 U A C U G U C U U C A C G
SEQRES 3 A 77 C A G A A A G C G U C U A
SEQRES 4 A 77 G C C A U G G C G U U A G
SEQRES 5 A 77 U A U G A G U G U C G U G
SEQRES 6 A 77 C A G C C U C C A G C C
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
Complete list - 23 20 Bytes