Header list of 1onv.pdb file
Complete list - b 23 2 Bytes
HEADER TRANSCRIPTION 02-MAR-03 1ONV
TITLE NMR STRUCTURE OF A COMPLEX CONTAINING THE TFIIF SUBUNIT RAP74 AND THE
TITLE 2 RNAP II CTD PHOSPHATASE FCP1
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: TRANSCRIPTION INITIATION FACTOR IIF, ALPHA SUBUNIT;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: C-TERMINAL DOMAIN OF RAP74, SEQUENCE DATABASE RESIDUES 436-
COMPND 5 517;
COMPND 6 SYNONYM: TFIIF-ALFA, TRANSCRIPTION INITIATION FACTOR RAP74;
COMPND 7 ENGINEERED: YES;
COMPND 8 MOL_ID: 2;
COMPND 9 MOLECULE: SERINE PHOSPHATASE FCP1A;
COMPND 10 CHAIN: B;
COMPND 11 FRAGMENT: C-TERMINAL DOMAIN OF FCP1, SEQUENCE DATABASE RESIDUES 760-
COMPND 12 842;
COMPND 13 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);
SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PGEX;
SOURCE 9 EXPRESSION_SYSTEM_PLASMID: GST-2T;
SOURCE 10 MOL_ID: 2;
SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 12 ORGANISM_COMMON: HUMAN;
SOURCE 13 ORGANISM_TAXID: 9606;
SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);
SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PGEX;
SOURCE 18 EXPRESSION_SYSTEM_PLASMID: GST-3X
KEYWDS TRANSCRIPTION FACTOR, HUMAN GENERAL TRANSCRIPTION FACTOR TFIIF,
KEYWDS 2 RAP74, RNA POLYMERASE II CTD PHOSPHATASE, TFIIF-ASSOCIATING CTD
KEYWDS 3 PHOSPHATASE, FCP1, TRANSCRIPTION
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR B.D.NGUYEN,K.L.ABBOTT,K.POTEMPA,M.S.KOBOR,J.ARCHAMBAULT,J.GREENBLATT,
AUTHOR 2 P.LEGAULT,J.G.OMICHINSKI
REVDAT 3 23-FEB-22 1ONV 1 REMARK
REVDAT 2 24-FEB-09 1ONV 1 VERSN
REVDAT 1 20-MAY-03 1ONV 0
JRNL AUTH B.D.NGUYEN,K.L.ABBOTT,K.POTEMPA,M.S.KOBOR,J.ARCHAMBAULT,
JRNL AUTH 2 J.GREENBLATT,P.LEGAULT,J.G.OMICHINSKI
JRNL TITL NMR STRUCTURE OF A COMPLEX CONTAINING THE TFIIF SUBUNIT
JRNL TITL 2 RAP74 AND THE RNA POLYMERASE II CARBOXYL-TERMINAL DOMAIN
JRNL TITL 3 PHOSPHATASE FCP1
JRNL REF PROC.NATL.ACAD.SCI.USA V. 100 5688 2003
JRNL REFN ISSN 0027-8424
JRNL PMID 12732728
JRNL DOI 10.1073/PNAS.1031524100
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : CNS 1.0, CNS MODIFIED CNS WITH CONFORMATIONAL
REMARK 3 DATABASE POTENTIAL
REMARK 3 AUTHORS : BRUNGER (CNS), KAY AND CHOY, CLORES (CNS)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES WERE DETERMINED BASED ON
REMARK 3 A TOTAL OF 1267 RESTRAINTS, 1131 NOE-DERIVED DISTANCE RESTRAINTS
REMARK 3 (INCLUDING 58 INTERMOLECULAR NOE-DERIVED DISTANCE RESTRAINTS)
REMARK 3 AND 136 DIHEDRAL ANGLE RESTRAINTS
REMARK 4
REMARK 4 1ONV COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-MAR-03.
REMARK 100 THE DEPOSITION ID IS D_1000018482.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 300
REMARK 210 PH : 6.5
REMARK 210 IONIC STRENGTH : 20MM SODIUM PHOSPHATE BUFFER
REMARK 210 PRESSURE : AMBIENT
REMARK 210 SAMPLE CONTENTS : 1MM CTERRAP74/CTERFCP1, 20MM
REMARK 210 SODIUM PHOSPHATE, AND 1MM EDTA;
REMARK 210 1MM U-15N CTERRAP74/CTERFCP1,
REMARK 210 20MM SODIUM PHOSPHATE, AND 1MM
REMARK 210 EDTA; 1MM U-15N,13C CTERRAP74/
REMARK 210 CTERFCP1, 20MM SODIUM PHOSPHATE,
REMARK 210 AND 1MM EDTA; 1MM CTERRAP74/U-
REMARK 210 15N CTERFCP1, 20MM SODIUM
REMARK 210 PHOSPHATE, AND 1MM EDTA; 1MM
REMARK 210 CTERRAP74/U-15N,13C CTERFCP1,
REMARK 210 20MM SODIUM PHOSPHATE, AND 1MM
REMARK 210 EDTA; 1MM U-15N,C13 CTERRAP74/
REMARK 210 CTERFCP1, 20MM SODIUM PHOSPHATE,
REMARK 210 AND 1MM EDTA;; 1MM CTERRAP74/U-
REMARK 210 15N,13C CTERFCP1, 20MM SODIUM
REMARK 210 PHOSPHATE, AND 1MM EDTA
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 3D_15N
REMARK 210 -SEPARATED_NOESY; HNCO, (HB)
REMARK 210 CBCA(CO)NNH, HNCACB, H(CCO)NNH-
REMARK 210 TOCSY, C(CO)NNH-TOCSY; 3D_13C-
REMARK 210 SEPARATED_NOESY; 2D 13C-FILTERD/
REMARK 210 EDITED NOESY; 3D 13C-FILTERD/
REMARK 210 EDITED NOESY; 3D 15N/13C
REMARK 210 SEPARATED NOESY
REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 800 MHZ
REMARK 210 SPECTROMETER MODEL : INOVA
REMARK 210 SPECTROMETER MANUFACTURER : VARIAN
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NMRPIPE, PIPP, NMRVIEW 5.0
REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 70
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20
REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH ACCEPTABLE
REMARK 210 COVALENT GEOMETRY,STRUCTURES
REMARK 210 WITH THE LEAST RESTRAINT
REMARK 210 VIOLATIONS,STRUCTURES WITH THE
REMARK 210 LOWEST ENERGY
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR
REMARK 210 SPECTROSCOPY
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465 MODELS 1-20
REMARK 465 RES C SSSEQI
REMARK 465 SER A 436
REMARK 465 THR A 437
REMARK 465 PRO A 438
REMARK 465 GLN A 439
REMARK 465 PRO A 440
REMARK 465 PRO A 441
REMARK 465 SER A 442
REMARK 465 GLY A 443
REMARK 465 LYS A 444
REMARK 465 THR A 445
REMARK 465 THR A 446
REMARK 465 PRO A 447
REMARK 465 ASN A 448
REMARK 465 SER A 449
REMARK 465 GLY A 450
REMARK 465 PRO B 879
REMARK 465 GLU B 880
REMARK 465 GLU B 881
REMARK 465 GLN B 882
REMARK 465 GLU B 883
REMARK 465 GLU B 884
REMARK 465 GLU B 885
REMARK 465 PRO B 886
REMARK 465 GLN B 887
REMARK 465 PRO B 888
REMARK 465 ARG B 889
REMARK 465 LYS B 890
REMARK 465 PRO B 891
REMARK 465 GLY B 892
REMARK 465 THR B 893
REMARK 465 ARG B 894
REMARK 465 ARG B 895
REMARK 465 GLU B 896
REMARK 465 ARG B 897
REMARK 465 THR B 898
REMARK 465 LEU B 899
REMARK 465 GLY B 900
REMARK 465 ALA B 901
REMARK 465 PRO B 902
REMARK 465 ALA B 903
REMARK 465 SER B 904
REMARK 465 SER B 905
REMARK 465 GLU B 906
REMARK 465 ARG B 907
REMARK 465 SER B 908
REMARK 465 ALA B 909
REMARK 465 ALA B 910
REMARK 465 GLY B 911
REMARK 465 GLY B 912
REMARK 465 ARG B 913
REMARK 465 GLY B 914
REMARK 465 PRO B 915
REMARK 465 ARG B 916
REMARK 465 GLY B 917
REMARK 465 HIS B 918
REMARK 465 LYS B 919
REMARK 465 ARG B 920
REMARK 465 LYS B 921
REMARK 465 LEU B 922
REMARK 465 ASN B 923
REMARK 465 GLU B 924
REMARK 465 GLU B 925
REMARK 465 ASP B 926
REMARK 465 ALA B 927
REMARK 465 ALA B 928
REMARK 465 SER B 929
REMARK 465 GLU B 930
REMARK 465 SER B 931
REMARK 465 SER B 932
REMARK 465 ARG B 933
REMARK 465 GLU B 934
REMARK 465 SER B 935
REMARK 465 SER B 936
REMARK 465 ASN B 937
REMARK 465 GLU B 938
REMARK 465 ASP B 939
REMARK 465 GLU B 940
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 THR A 479 33.97 -169.75
REMARK 500 1 LYS A 481 -44.44 -130.78
REMARK 500 1 PRO A 502 -168.39 -75.83
REMARK 500 1 SER B 944 -66.03 -165.70
REMARK 500 2 THR A 479 34.27 -170.62
REMARK 500 2 LYS A 481 29.73 -162.57
REMARK 500 2 SER B 944 -52.92 -172.20
REMARK 500 3 PHE A 477 -72.13 -87.78
REMARK 500 3 LYS A 481 -160.15 53.42
REMARK 500 3 THR A 482 -59.95 72.29
REMARK 500 3 ASN A 508 -78.62 63.25
REMARK 500 3 ASP A 509 29.24 -160.12
REMARK 500 3 SER B 944 -64.77 -176.88
REMARK 500 4 PHE A 477 47.74 -157.15
REMARK 500 4 LYS A 481 83.01 -66.00
REMARK 500 4 SER B 944 -58.24 -160.13
REMARK 500 5 THR A 479 87.07 -158.18
REMARK 500 6 THR A 479 93.18 -55.68
REMARK 500 6 SER B 943 34.89 -170.34
REMARK 500 6 SER B 944 -75.57 -124.50
REMARK 500 7 LYS A 481 84.50 -61.88
REMARK 500 7 SER B 944 -56.22 -162.37
REMARK 500 8 THR A 479 90.48 -56.37
REMARK 500 8 LYS A 480 -76.64 -132.89
REMARK 500 8 SER B 943 -50.06 -150.80
REMARK 500 8 SER B 944 -70.00 67.39
REMARK 500 9 GLN A 478 -52.17 -176.39
REMARK 500 9 LYS A 480 -69.68 -97.71
REMARK 500 9 LYS A 481 48.00 -176.32
REMARK 500 9 PRO A 502 -168.59 -77.06
REMARK 500 9 SER B 944 -63.88 -133.09
REMARK 500 10 PHE A 477 66.91 -151.75
REMARK 500 10 LYS A 480 -173.93 -65.77
REMARK 500 10 SER B 943 81.46 59.10
REMARK 500 10 SER B 944 -52.12 -160.41
REMARK 500 11 THR A 479 27.11 -157.67
REMARK 500 11 LYS A 481 100.49 -175.77
REMARK 500 11 THR A 482 -44.66 -155.08
REMARK 500 11 PRO A 502 -167.71 -73.87
REMARK 500 11 SER B 943 -176.88 59.45
REMARK 500 11 SER B 944 -65.33 69.44
REMARK 500 12 THR A 479 47.09 -175.67
REMARK 500 12 LYS A 481 66.20 -69.68
REMARK 500 12 SER B 942 77.84 58.91
REMARK 500 12 SER B 943 37.03 -174.44
REMARK 500 13 LYS A 480 -76.72 -102.21
REMARK 500 13 LYS A 481 28.67 -153.95
REMARK 500 14 GLN A 478 -61.97 -128.18
REMARK 500 15 THR A 482 23.61 -150.63
REMARK 500 15 SER B 942 91.02 59.28
REMARK 500
REMARK 500 THIS ENTRY HAS 66 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
DBREF 1ONV A 436 517 UNP P35269 T2FA_HUMAN 436 517
DBREF 1ONV B 879 961 UNP Q9Y5B0 CTDP1_HUMAN 760 842
SEQRES 1 A 82 SER THR PRO GLN PRO PRO SER GLY LYS THR THR PRO ASN
SEQRES 2 A 82 SER GLY ASP VAL GLN VAL THR GLU ASP ALA VAL ARG ARG
SEQRES 3 A 82 TYR LEU THR ARG LYS PRO MET THR THR LYS ASP LEU LEU
SEQRES 4 A 82 LYS LYS PHE GLN THR LYS LYS THR GLY LEU SER SER GLU
SEQRES 5 A 82 GLN THR VAL ASN VAL LEU ALA GLN ILE LEU LYS ARG LEU
SEQRES 6 A 82 ASN PRO GLU ARG LYS MET ILE ASN ASP LYS MET HIS PHE
SEQRES 7 A 82 SER LEU LYS GLU
SEQRES 1 B 83 PRO GLU GLU GLN GLU GLU GLU PRO GLN PRO ARG LYS PRO
SEQRES 2 B 83 GLY THR ARG ARG GLU ARG THR LEU GLY ALA PRO ALA SER
SEQRES 3 B 83 SER GLU ARG SER ALA ALA GLY GLY ARG GLY PRO ARG GLY
SEQRES 4 B 83 HIS LYS ARG LYS LEU ASN GLU GLU ASP ALA ALA SER GLU
SEQRES 5 B 83 SER SER ARG GLU SER SER ASN GLU ASP GLU GLY SER SER
SEQRES 6 B 83 SER GLU ALA ASP GLU MET ALA LYS ALA LEU GLU ALA GLU
SEQRES 7 B 83 LEU ASN ASP LEU MET
HELIX 1 1 THR A 455 LYS A 466 1 12
HELIX 2 2 THR A 469 PHE A 477 1 9
HELIX 3 3 SER A 485 ASN A 501 1 17
HELIX 4 4 SER B 944 ASN B 958 1 15
SHEET 1 A 2 GLU A 503 MET A 506 0
SHEET 2 A 2 MET A 511 SER A 514 -1 O HIS A 512 N LYS A 505
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - b 23 2 Bytes