Header list of 1nz9.pdb file
Complete list - b 23 2 Bytes
HEADER TRANSCRIPTION 17-FEB-03 1NZ9
TITLE SOLUTION STRUCTURE OF THE N-UTILIZATION SUBSTANCE G (NUSG) C-TERMINAL
TITLE 2 (NGC) DOMAIN FROM THERMUS THERMOPHILUS
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: TRANSCRIPTION ANTITERMINATION PROTEIN NUSG;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: C-TERMINAL (NGC) DOMAIN;
COMPND 5 SYNONYM: N-UTILIZATION SUBSTANCE G;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS;
SOURCE 3 ORGANISM_TAXID: 274;
SOURCE 4 GENE: NUSG;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3);
SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B
KEYWDS TRANSCRIPTION ELONGATION, TERMINATION, ANTITERMINATION, RIKEN
KEYWDS 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, STRUCTURAL
KEYWDS 3 GENOMICS, TRANSCRIPTION
EXPDTA SOLUTION NMR
NUMMDL 31
AUTHOR P.REAY,K.YAMASAKI,T.TERADA,S.KURAMITSU,M.SHIROUZU,S.YOKOYAMA,RIKEN
AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 4 23-FEB-22 1NZ9 1 REMARK
REVDAT 3 24-FEB-09 1NZ9 1 VERSN
REVDAT 2 20-JUL-04 1NZ9 1 JRNL
REVDAT 1 06-APR-04 1NZ9 0
JRNL AUTH P.REAY,K.YAMASAKI,T.TERADA,S.KURAMITSU,M.SHIROUZU,S.YOKOYAMA
JRNL TITL STRUCTURAL AND SEQUENCE COMPARISONS ARISING FROM THE
JRNL TITL 2 SOLUTION STRUCTURE OF THE TRANSCRIPTION ELONGATION FACTOR
JRNL TITL 3 NUSG FROM THERMUS THERMOPHILUS
JRNL REF PROTEINS V. 56 40 2004
JRNL REFN ISSN 0887-3585
JRNL PMID 15162485
JRNL DOI 10.1002/PROT.20054
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : XWINNMR 2.6, CNS 1.1
REMARK 3 AUTHORS : BRUKER (XWINNMR),
REMARK 3 BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE,JIANG,KUSZEWSKI,
REMARK 3 NILGES, PANNU,READ,RICE,SIMONSON,WARREN (CNS)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: 566 UNAMBIGUOUS NOE DISTANCE
REMARK 3 RESTRAINTS, 52 HYDROGEN BOND RESTRAINTS, 46 HN-N DIPOLAR
REMARK 3 COUPLINGS, NO RESONANCES WERE ASSIGNED FOR ALA 127
REMARK 4
REMARK 4 1NZ9 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-FEB-03.
REMARK 100 THE DEPOSITION ID IS D_1000018378.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 318
REMARK 210 PH : 5.5
REMARK 210 IONIC STRENGTH : 50MM PHOSPAHTE, 100MM KCL
REMARK 210 PRESSURE : AMBIENT
REMARK 210 SAMPLE CONTENTS : 2MM NUSG C-DOMAIN, 50MM
REMARK 210 PHOSPHATE BUFFER, 100MM KCL, 95%
REMARK 210 H2O, 5% D2O; 2MM 15N NUSG C-
REMARK 210 DOMAIN, 50MM PHOSPHATE BUFFER,
REMARK 210 100MM KCL, 95% H2O, 5% D2O; 2MM
REMARK 210 15N NUSG C-DOMAIN, 50MM
REMARK 210 PHOSPHATE BUFFER, 100MM KCL, 100%
REMARK 210 D2O
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; HSQC; HMQC-J
REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 750 MHZ
REMARK 210 SPECTROMETER MODEL : DMX
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : ANSIG 3.3, CNS 1.1
REMARK 210 METHOD USED : SIMULATED ANNEALING, MOLECULAR
REMARK 210 DYNAMICS, TORSION ANGLE DYNAMICS
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 90
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 31
REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST
REMARK 210 ENERGY, NONE WITH DISTANCE
REMARK 210 VIOLATIONS > 0.2 ANGSTROMS, NONE
REMARK 210 WITH DIHEDRAL ANGLE RESTRAINT
REMARK 210 VIOLATIONS > 2 DEGREES
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: MODEL 31 IS THE MINIMIZED AVERAGE STRUCTURE
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O ASP A 177 H GLN A 180 1.59
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 SER A 141 -164.18 -160.43
REMARK 500 1 ALA A 145 39.69 -79.14
REMARK 500 1 ASP A 146 34.87 -160.70
REMARK 500 1 THR A 172 91.17 -160.02
REMARK 500 2 GLN A 128 158.81 60.51
REMARK 500 2 SER A 141 -164.69 -160.44
REMARK 500 2 ALA A 145 35.67 -82.38
REMARK 500 2 ASP A 146 35.63 -160.96
REMARK 500 2 THR A 152 -60.47 -105.22
REMARK 500 2 ARG A 158 -50.10 -160.08
REMARK 500 2 PHE A 168 79.43 43.52
REMARK 500 2 ARG A 170 109.21 -160.13
REMARK 500 3 SER A 141 -165.14 -160.11
REMARK 500 3 ALA A 145 36.87 -77.48
REMARK 500 3 ASP A 146 34.41 -161.05
REMARK 500 3 ARG A 158 -44.16 -160.07
REMARK 500 4 GLN A 128 74.57 60.07
REMARK 500 4 ALA A 145 50.71 -69.63
REMARK 500 4 ASP A 146 31.37 -160.61
REMARK 500 4 ARG A 158 -45.25 -159.96
REMARK 500 4 PHE A 168 -72.49 65.86
REMARK 500 4 THR A 172 81.30 -159.99
REMARK 500 4 LEU A 176 -158.96 -124.27
REMARK 500 5 ALA A 145 39.22 -80.42
REMARK 500 5 ASP A 146 31.57 -160.78
REMARK 500 5 THR A 152 -55.54 -137.55
REMARK 500 5 PHE A 168 76.86 -166.37
REMARK 500 5 THR A 172 84.21 -159.74
REMARK 500 6 GLN A 128 140.86 63.44
REMARK 500 6 SER A 141 -165.42 -160.22
REMARK 500 6 ALA A 145 38.44 -80.53
REMARK 500 6 ASP A 146 36.98 -161.03
REMARK 500 6 VAL A 151 105.95 -56.98
REMARK 500 7 VAL A 129 31.12 -98.64
REMARK 500 7 ASP A 135 -176.08 -57.91
REMARK 500 7 SER A 141 -163.50 -160.50
REMARK 500 7 ALA A 145 37.68 -79.53
REMARK 500 7 ASP A 146 32.05 -160.91
REMARK 500 7 ARG A 158 -45.17 -159.86
REMARK 500 7 LEU A 176 -159.18 -137.54
REMARK 500 8 ALA A 145 46.93 -69.82
REMARK 500 8 ASP A 146 32.19 -160.71
REMARK 500 8 ILE A 167 -66.83 -136.29
REMARK 500 8 PHE A 168 55.57 -91.46
REMARK 500 8 PRO A 173 83.37 -66.77
REMARK 500 9 ALA A 145 39.49 -67.82
REMARK 500 9 ASP A 146 31.23 -160.89
REMARK 500 9 ARG A 158 -60.16 -103.80
REMARK 500 10 GLN A 128 97.81 -166.32
REMARK 500 10 ALA A 145 47.63 -69.65
REMARK 500
REMARK 500 THIS ENTRY HAS 162 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 650
REMARK 650 HELIX
REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 1NZ8 RELATED DB: PDB
REMARK 900 N-TERMINAL (NGN) DOMAIN
REMARK 900 RELATED ID: TTK003000790.2 RELATED DB: TARGETDB
DBREF 1NZ9 A 127 184 UNP P35872 NUSG_THET8 127 184
SEQRES 1 A 58 ALA GLN VAL ALA PHE ARG GLU GLY ASP GLN VAL ARG VAL
SEQRES 2 A 58 VAL SER GLY PRO PHE ALA ASP PHE THR GLY THR VAL THR
SEQRES 3 A 58 GLU ILE ASN PRO GLU ARG GLY LYS VAL LYS VAL MET VAL
SEQRES 4 A 58 THR ILE PHE GLY ARG GLU THR PRO VAL GLU LEU ASP PHE
SEQRES 5 A 58 SER GLN VAL VAL LYS ALA
HELIX 1 1 PHE A 178 GLN A 180 5 3
SHEET 1 A 5 GLU A 171 LEU A 176 0
SHEET 2 A 5 LYS A 160 THR A 166 -1 N VAL A 161 O LEU A 176
SHEET 3 A 5 THR A 148 ASN A 155 -1 N GLU A 153 O LYS A 162
SHEET 4 A 5 GLN A 136 VAL A 139 -1 N VAL A 137 O GLY A 149
SHEET 5 A 5 VAL A 181 LYS A 183 -1 O VAL A 182 N ARG A 138
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - b 23 2 Bytes