Header list of 1nyn.pdb file
Complete list - b 23 2 Bytes
HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 13-FEB-03 1NYN
TITLE SOLUTION NMR STRUCTURE OF PROTEIN YHR087W FROM SACCHAROMYCES
TITLE 2 CEREVISIAE. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET YTYST425.
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: HYPOTHETICAL 12.0 KDA PROTEIN IN NAM8-GAR1 INTERGENIC
COMPND 3 REGION;
COMPND 4 CHAIN: A;
COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE;
SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST;
SOURCE 4 ORGANISM_TAXID: 4932;
SOURCE 5 GENE: YHR087W;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET 15B
KEYWDS HYPOTHETICAL PROTEIN, STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE
KEYWDS 2 INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG, UNKNOWN
KEYWDS 3 FUNCTION
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR J.R.CORT,A.A.YEE,C.H.ARROWSMITH,M.A.KENNEDY,NORTHEAST STRUCTURAL
AUTHOR 2 GENOMICS CONSORTIUM (NESG)
REVDAT 6 23-FEB-22 1NYN 1 REMARK SEQADV
REVDAT 5 24-FEB-09 1NYN 1 VERSN
REVDAT 4 06-SEP-05 1NYN 1 AUTHOR
REVDAT 3 17-MAY-05 1NYN 1 JRNL
REVDAT 2 25-JAN-05 1NYN 1 AUTHOR KEYWDS REMARK
REVDAT 1 08-APR-03 1NYN 0
JRNL AUTH A.SAVCHENKO,N.KROGAN,J.R.CORT,E.EVDOKIMOVA,J.M.LEW,A.A.YEE,
JRNL AUTH 2 L.SANCHEZ-PULIDO,M.A.ANDRADE,A.BOCHKAREV,J.D.WATSON,
JRNL AUTH 3 M.A.KENNEDY,J.GREENBLATT,T.HUGHES,C.H.ARROWSMITH,
JRNL AUTH 4 J.M.ROMMENS,A.M.EDWARDS
JRNL TITL THE SHWACHMAN-BODIAN-DIAMOND SYNDROME PROTEIN FAMILY IS
JRNL TITL 2 INVOLVED IN RNA METABOLISM.
JRNL REF J.BIOL.CHEM. V. 280 19213 2005
JRNL REFN ISSN 0021-9258
JRNL PMID 15701634
JRNL DOI 10.1074/JBC.M414421200
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : NIH-XPLOR 2.0.4
REMARK 3 AUTHORS : BRUNGER, A.T., SCHWIETERS, C.D., KUSZEWSKI, J.J.,
REMARK 3 TJANDRA, N., CLORE, G.M.
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS:
REMARK 3 THE STRUCTURES ARE BASED ON A TOTAL OF 665 CONFORMATIONALLY-
REMARK 3 RESTRICTING NOE-DERIVED DISTANCE RESTRAINTS,
REMARK 3 73 DIHEDRAL ANGLE RESTRAINTS, AND 44 HYDROGEN BOND RESTRAINTS
REMARK 3 (10.0 RESTRAINTS PER RESIDUE FOR RESIDUES
REMARK 3 4-90, EXCLUDING LOOP RESIDUES 51-59). THE 20 RESIDUE N-TERMINAL
REMARK 3 TAG (MGSSHHHHHHSSGLVPRGSH) WAS NOT
REMARK 3 INCLUDED IN THE STRUCTURE CALCULATION AND IS NOT PRESENT IN THE
REMARK 3 COORDINATES.
REMARK 4
REMARK 4 1NYN COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-MAR-03.
REMARK 100 THE DEPOSITION ID IS D_1000018356.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 298
REMARK 210 PH : 5.0
REMARK 210 IONIC STRENGTH : 300MM NACL
REMARK 210 PRESSURE : AMBIENT
REMARK 210 SAMPLE CONTENTS : 1MM YHR087W U-13C,15N, 10MM
REMARK 210 SODIUM ACETATE, 300MM NACL; 1MM
REMARK 210 YHR087W U-13C,15N, 10MM SODIUM
REMARK 210 ACETATE, 300MM NACL
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C
REMARK 210 -SEPARATED_NOESY; 4D_13C-
REMARK 210 SEPARATED_NOESY; HNHA
REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 600 MHZ
REMARK 210 SPECTROMETER MODEL : INOVA; UNITY
REMARK 210 SPECTROMETER MANUFACTURER : VARIAN
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : FELIX 97, NIH-XPLOR 2.0.4
REMARK 210 METHOD USED : SIMULATED ANNEALING
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 20
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20
REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES
REMARK 210 SUBMITTED
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK:
REMARK 210 BACKBONE AND SIDECHAIN ASSIGNMENTS WERE DETERMINED MANUALLY FROM
REMARK 210 TRIPLE-RESONANCE NMR DATA. NOE DISTANCE
REMARK 210 RESTRAINTS WERE DERIVED MANUALLY FROM NOESY DATA. PHI DIHEDRAL
REMARK 210 ANGLE RESTRAINTS WERE DERIVED FROM THE
REMARK 210 HNHA EXPERIMENT. PSI DIHEDRAL ANGLE RESTRAINTS WERE DERIVED FROM
REMARK 210 NOE RATIOS, SECONDARY STRUCTURE
REMARK 210 PROPENSITIES EVIDENT IN PRELIMINARY STRUCTURES, AND FROM ALPHA
REMARK 210 CARBON 13C CHEMICAL SHIFT TRENDS. RESIDUES
REMARK 210 51-59 COMPRISE A POORLY-DEFINED LOOP IN THIS ENSEMBLE OF
REMARK 210 STRUCTURES. RESIDUES 92 TO 110 ARE ALSO NOT
REMARK 210 WELL-DEFINED IN THE ENSEMBLE.
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465 MODELS 1-20
REMARK 465 RES C SSSEQI
REMARK 465 MET A -19
REMARK 465 GLY A -18
REMARK 465 SER A -17
REMARK 465 SER A -16
REMARK 465 HIS A -15
REMARK 465 HIS A -14
REMARK 465 HIS A -13
REMARK 465 HIS A -12
REMARK 465 HIS A -11
REMARK 465 HIS A -10
REMARK 465 SER A -9
REMARK 465 SER A -8
REMARK 465 GLY A -7
REMARK 465 LEU A -6
REMARK 465 VAL A -5
REMARK 465 PRO A -4
REMARK 465 ARG A -3
REMARK 465 GLY A -2
REMARK 465 SER A -1
REMARK 465 HIS A 0
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O GLN A 51 H GLY A 53 1.44
REMARK 500 O SER A 34 H LYS A 37 1.49
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 SER A 2 6.72 173.82
REMARK 500 1 ALA A 21 -73.33 -73.96
REMARK 500 1 GLU A 24 -74.72 -65.49
REMARK 500 1 VAL A 26 -70.61 -67.32
REMARK 500 1 ASN A 32 79.43 -175.62
REMARK 500 1 SER A 34 94.41 -164.33
REMARK 500 1 LEU A 38 -31.61 -39.13
REMARK 500 1 VAL A 41 -70.94 -69.17
REMARK 500 1 PRO A 50 -172.38 -45.30
REMARK 500 1 ASP A 52 59.25 -62.94
REMARK 500 1 LEU A 60 150.75 -38.42
REMARK 500 1 GLU A 71 -73.03 -113.75
REMARK 500 1 LYS A 77 -140.87 -114.37
REMARK 500 1 ASN A 88 75.62 -167.87
REMARK 500 1 PRO A 91 165.27 -48.50
REMARK 500 1 THR A 95 56.19 -107.39
REMARK 500 1 SER A 96 172.80 -53.56
REMARK 500 1 SER A 97 -77.06 -171.34
REMARK 500 1 LYS A 99 -160.51 -64.26
REMARK 500 1 LYS A 101 -157.86 -88.13
REMARK 500 1 ASN A 104 -78.86 -158.47
REMARK 500 1 ALA A 109 -94.31 -92.62
REMARK 500 2 VAL A 4 -179.80 -55.27
REMARK 500 2 GLU A 12 -82.55 -42.82
REMARK 500 2 ALA A 21 -87.19 -73.93
REMARK 500 2 GLU A 24 -74.06 -75.14
REMARK 500 2 ASN A 32 70.59 -150.31
REMARK 500 2 SER A 34 -104.84 -171.26
REMARK 500 2 ILE A 35 -20.61 -169.08
REMARK 500 2 GLU A 46 114.22 -166.70
REMARK 500 2 GLN A 51 -32.73 -144.80
REMARK 500 2 ARG A 54 -3.99 57.94
REMARK 500 2 LEU A 60 -170.55 57.54
REMARK 500 2 GLN A 67 -39.23 -35.91
REMARK 500 2 GLU A 71 -70.18 -98.61
REMARK 500 2 PHE A 72 54.20 -160.07
REMARK 500 2 LYS A 74 -61.08 177.81
REMARK 500 2 LYS A 77 -149.13 -71.84
REMARK 500 2 ASN A 88 -86.94 -76.44
REMARK 500 2 PRO A 91 -160.66 -48.81
REMARK 500 2 THR A 95 -170.26 -51.14
REMARK 500 2 LEU A 98 -80.23 -109.85
REMARK 500 2 LYS A 99 93.06 80.34
REMARK 500 2 ASN A 104 104.88 -168.81
REMARK 500 2 ALA A 105 -146.25 -78.74
REMARK 500 2 LYS A 108 -132.59 -76.95
REMARK 500 2 TYR A 110 175.40 70.43
REMARK 500 3 ASN A 13 -35.27 -149.70
REMARK 500 3 ALA A 21 -90.68 -106.05
REMARK 500 3 ASN A 32 71.55 -167.66
REMARK 500
REMARK 500 THIS ENTRY HAS 402 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: YTYST425 RELATED DB: TARGETDB
DBREF 1NYN A 1 111 UNP P38804 YHO7_YEAST 1 111
SEQADV 1NYN MET A -19 UNP P38804 EXPRESSION TAG
SEQADV 1NYN GLY A -18 UNP P38804 EXPRESSION TAG
SEQADV 1NYN SER A -17 UNP P38804 EXPRESSION TAG
SEQADV 1NYN SER A -16 UNP P38804 EXPRESSION TAG
SEQADV 1NYN HIS A -15 UNP P38804 EXPRESSION TAG
SEQADV 1NYN HIS A -14 UNP P38804 EXPRESSION TAG
SEQADV 1NYN HIS A -13 UNP P38804 EXPRESSION TAG
SEQADV 1NYN HIS A -12 UNP P38804 EXPRESSION TAG
SEQADV 1NYN HIS A -11 UNP P38804 EXPRESSION TAG
SEQADV 1NYN HIS A -10 UNP P38804 EXPRESSION TAG
SEQADV 1NYN SER A -9 UNP P38804 EXPRESSION TAG
SEQADV 1NYN SER A -8 UNP P38804 EXPRESSION TAG
SEQADV 1NYN GLY A -7 UNP P38804 EXPRESSION TAG
SEQADV 1NYN LEU A -6 UNP P38804 EXPRESSION TAG
SEQADV 1NYN VAL A -5 UNP P38804 EXPRESSION TAG
SEQADV 1NYN PRO A -4 UNP P38804 EXPRESSION TAG
SEQADV 1NYN ARG A -3 UNP P38804 EXPRESSION TAG
SEQADV 1NYN GLY A -2 UNP P38804 EXPRESSION TAG
SEQADV 1NYN SER A -1 UNP P38804 EXPRESSION TAG
SEQADV 1NYN HIS A 0 UNP P38804 EXPRESSION TAG
SEQRES 1 A 131 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY
SEQRES 2 A 131 LEU VAL PRO ARG GLY SER HIS MET SER THR VAL THR LYS
SEQRES 3 A 131 TYR PHE TYR LYS GLY GLU ASN THR ASP LEU ILE VAL PHE
SEQRES 4 A 131 ALA ALA SER GLU GLU LEU VAL ASP GLU TYR LEU LYS ASN
SEQRES 5 A 131 PRO SER ILE GLY LYS LEU SER GLU VAL VAL GLU LEU PHE
SEQRES 6 A 131 GLU VAL PHE THR PRO GLN ASP GLY ARG GLY ALA GLU GLY
SEQRES 7 A 131 GLU LEU GLY ALA ALA SER LYS ALA GLN VAL GLU ASN GLU
SEQRES 8 A 131 PHE GLY LYS GLY LYS LYS ILE GLU GLU VAL ILE ASP LEU
SEQRES 9 A 131 ILE LEU ARG ASN GLY LYS PRO ASN SER THR THR SER SER
SEQRES 10 A 131 LEU LYS THR LYS GLY GLY ASN ALA GLY THR LYS ALA TYR
SEQRES 11 A 131 ASN
HELIX 1 1 SER A 22 ASN A 32 1 11
HELIX 2 2 SER A 34 VAL A 42 1 9
HELIX 3 3 SER A 64 GLY A 73 1 10
HELIX 4 4 ILE A 78 ASN A 88 1 11
SHEET 1 A 2 THR A 5 LYS A 10 0
SHEET 2 A 2 ASP A 15 ALA A 20 -1 O VAL A 18 N TYR A 7
SHEET 1 B 2 PHE A 48 THR A 49 0
SHEET 2 B 2 GLY A 61 ALA A 62 -1 O GLY A 61 N THR A 49
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - b 23 2 Bytes