Header list of 1nyf.pdb file
Complete list - 23 202 Bytes
HEADER PHOSPHOTRANSFERASE 22-APR-96 1NYF
TITLE NMR STUDY OF THE SH3 DOMAIN FROM FYN PROTO-ONCOGENE TYROSINE KINASE,
TITLE 2 MINIMIZED AVERAGE (PROBMAP) STRUCTURE
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: FYN;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: SH3 DOMAIN, RESIDUES 82 - 148;
COMPND 5 EC: 2.7.1.112;
COMPND 6 ENGINEERED: YES;
COMPND 7 MUTATION: YES;
COMPND 8 OTHER_DETAILS: N-TERMINAL GS FROM EXPRESSION SYSTEM
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 CELL_LINE: BL21;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3);
SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX
KEYWDS SH3 DOMAIN, POLYPROLINE-BINDING, PHOSPHOTRANSFERASE
EXPDTA SOLUTION NMR
AUTHOR C.J.MORTON,D.J.R.PUGH,I.D.CAMPBELL
REVDAT 3 23-FEB-22 1NYF 1 REMARK
REVDAT 2 24-FEB-09 1NYF 1 VERSN
REVDAT 1 08-NOV-96 1NYF 0
JRNL AUTH C.J.MORTON,D.J.PUGH,E.L.BROWN,J.D.KAHMANN,D.A.RENZONI,
JRNL AUTH 2 I.D.CAMPBELL
JRNL TITL SOLUTION STRUCTURE AND PEPTIDE BINDING OF THE SH3 DOMAIN
JRNL TITL 2 FROM HUMAN FYN.
JRNL REF STRUCTURE V. 4 705 1996
JRNL REFN ISSN 0969-2126
JRNL PMID 8805554
JRNL DOI 10.1016/S0969-2126(96)00076-7
REMARK 1
REMARK 1 REFERENCE 1
REMARK 1 AUTH M.E.NOBLE,A.MUSACCHIO,M.SARASTE,S.A.COURTNEIDGE,R.K.WIERENGA
REMARK 1 TITL CRYSTAL STRUCTURE OF THE SH3 DOMAIN IN HUMAN FYN; COMPARISON
REMARK 1 TITL 2 OF THE THREE-DIMENSIONAL STRUCTURES OF SH3 DOMAINS IN
REMARK 1 TITL 3 TYROSINE KINASES AND SPECTRIN
REMARK 1 REF EMBO J. V. 12 2617 1993
REMARK 1 REFN ISSN 0261-4189
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : X-PLOR 3.1
REMARK 3 AUTHORS : BRUNGER
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 1NYF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 100 THE DEPOSITION ID IS D_1000175409.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : NULL
REMARK 210 PH : NULL
REMARK 210 IONIC STRENGTH : NULL
REMARK 210 PRESSURE : NULL
REMARK 210 SAMPLE CONTENTS : NULL
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL
REMARK 210 SPECTROMETER FIELD STRENGTH : NULL
REMARK 210 SPECTROMETER MODEL : NULL
REMARK 210 SPECTROMETER MANUFACTURER : NULL
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NULL
REMARK 210 METHOD USED : NULL
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1
REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465 RES C SSSEQI
REMARK 465 THR A 82
REMARK 465 GLY A 83
REMARK 465 ASP A 142
REMARK 465 SER A 143
REMARK 465 ILE A 144
REMARK 465 GLN A 145
REMARK 465 ALA A 146
REMARK 465 GLU A 147
REMARK 465 GLU A 148
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 PHE A 103 -169.19 -165.19
REMARK 500 SER A 114 -72.58 -95.97
REMARK 500 GLU A 116 -162.58 40.39
REMARK 500 ASP A 118 -31.03 170.59
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: PLANAR GROUPS
REMARK 500
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS
REMARK 500 AN RMSD GREATER THAN THIS VALUE
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 M RES CSSEQI RMS TYPE
REMARK 500 ARG A 96 0.31 SIDE CHAIN
REMARK 500 ARG A 123 0.09 SIDE CHAIN
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 1NYG RELATED DB: PDB
DBREF 1NYF A 82 148 UNP P06241 FYN_HUMAN 81 147
SEQRES 1 A 67 THR GLY VAL THR LEU PHE VAL ALA LEU TYR ASP TYR GLU
SEQRES 2 A 67 ALA ARG THR GLU ASP ASP LEU SER PHE HIS LYS GLY GLU
SEQRES 3 A 67 LYS PHE GLN ILE LEU ASN SER SER GLU GLY ASP TRP TRP
SEQRES 4 A 67 GLU ALA ARG SER LEU THR THR GLY GLU THR GLY TYR ILE
SEQRES 5 A 67 PRO SER ASN TYR VAL ALA PRO VAL ASP SER ILE GLN ALA
SEQRES 6 A 67 GLU GLU
HELIX 1 HA PRO A 134 TYR A 137 5 4
SHEET 1 S1 3 LYS A 108 LEU A 112 0
SHEET 2 S1 3 LEU A 86 ALA A 89 -1 N PHE A 87 O PHE A 109
SHEET 3 S1 3 VAL A 138 PRO A 140 -1 O ALA A 139 N VAL A 88
SHEET 1 S2 3 ASN A 113 SER A 114 0
SHEET 2 S2 3 TRP A 119 SER A 124 -1 N GLU A 121 O ASN A 113
SHEET 3 S2 3 THR A 130 ILE A 133 -1 O ILE A 133 N TRP A 120
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
Complete list - 23 202 Bytes