Header list of 1mv6.pdb file
Complete list - 23 20 Bytes
HEADER RNA 24-SEP-02 1MV6
TITLE THE TANDEM, SHEARED PP PAIRS IN 5'(RGGCPPGCCU)2
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: 5'-R(*GP*GP*CP*(P5P)P*(P5P)P*GP*CP*CP*U)-3';
COMPND 3 CHAIN: A, B;
COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 SYNTHETIC: YES
KEYWDS RIBONUCLEIC ACID, DUPLEX, TANDEM MISMATCH, PURINE, RNA
EXPDTA SOLUTION NMR
NUMMDL 3
AUTHOR B.M.ZNOSKO,M.E.BURKARD,T.R.KRUGH,D.H.TURNER
REVDAT 3 23-FEB-22 1MV6 1 REMARK LINK
REVDAT 2 24-FEB-09 1MV6 1 VERSN
REVDAT 1 18-DEC-02 1MV6 0
JRNL AUTH B.M.ZNOSKO,M.E.BURKARD,T.R.KRUGH,D.H.TURNER
JRNL TITL MOLECULAR RECOGNITION IN PURINE-RICH INTERNAL LOOPS:
JRNL TITL 2 THERMODYNAMIC, STRUCTURAL, AND DYNAMIC CONSEQUENCES OF
JRNL TITL 3 PURINE FOR ADENINE SUBSTITUTIONS IN 5'(RGGCAAGCCU)2
JRNL REF BIOCHEMISTRY V. 41 14978 2002
JRNL REFN ISSN 0006-2960
JRNL PMID 12475247
JRNL DOI 10.1021/BI0203278
REMARK 1
REMARK 1 REFERENCE 1
REMARK 1 AUTH B.M.ZNOSKO,M.E.BURKARD,S.J.SCHROEDER,T.R.KRUGH,D.H.TURNER
REMARK 1 TITL SHEARED AANTI-AANTI BASE PAIRS IN A DESTABILIZING 2X2
REMARK 1 TITL 2 INTERNAL LOOP: THE NMR STRUCTURE OF 5'(RGGCAAGCCU)2
REMARK 1 REF BIOCHEMISTRY V. 41 14969 2002
REMARK 1 REFN ISSN 0006-2960
REMARK 1 DOI 10.1021/BI020326F
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : VNMR 5.2, DISCOVER 95.0
REMARK 3 AUTHORS : VARIAN (VNMR), MSI (DISCOVER)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: TOTAL OF 63 INTERPROTON DISTANCE
REMARK 3 RESTRAINTS PER STRAND, 18 HYDROGEN BOND RESTRAINTS, AND 50
REMARK 3 DIHEDRAL ANGLE RESTRAINTS PER STRAND.
REMARK 4
REMARK 4 1MV6 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-OCT-02.
REMARK 100 THE DEPOSITION ID IS D_1000017210.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 273; 303
REMARK 210 PH : 6.5; 7.7
REMARK 210 IONIC STRENGTH : 90% H2O, 10% D2O; 99.996% D2O
REMARK 210 PRESSURE : AMBIENT; AMBIENT
REMARK 210 SAMPLE CONTENTS : 1MM RNA, 80 MM NACL, 10MM
REMARK 210 PHOSPHATE BUFFER, 0.5MM EDTA; 90%
REMARK 210 H2O, 10% D2O; 2MM RNA, 80 MM
REMARK 210 NACL, 10MM PHOSPHATE BUFFER,
REMARK 210 0.5MM EDTA; 99.996% D2O
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY
REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ
REMARK 210 SPECTROMETER MODEL : INOVA
REMARK 210 SPECTROMETER MANUFACTURER : VARIAN
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : FELIX 2000, DISCOVER 95.0
REMARK 210 METHOD USED : SIMULATED ANNEALING, ENERGY
REMARK 210 MINIMIZATION
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 33
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 3
REMARK 210 CONFORMERS, SELECTION CRITERIA : RANDOM STRUCTURES TO SHOW
REMARK 210 VARIETY
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 3
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 1 C A 3 O4' - C1' - N1 ANGL. DEV. = 5.8 DEGREES
REMARK 500 1 C A 7 O4' - C1' - N1 ANGL. DEV. = 5.0 DEGREES
REMARK 500 1 C A 8 O4' - C1' - N1 ANGL. DEV. = 5.2 DEGREES
REMARK 500 1 C B 3 O4' - C1' - N1 ANGL. DEV. = 4.7 DEGREES
REMARK 500 1 C B 7 O4' - C1' - N1 ANGL. DEV. = 4.7 DEGREES
REMARK 500 1 C B 8 O4' - C1' - N1 ANGL. DEV. = 4.9 DEGREES
REMARK 500 1 U B 9 O4' - C1' - N1 ANGL. DEV. = 4.3 DEGREES
REMARK 500 2 C A 3 O4' - C1' - N1 ANGL. DEV. = 5.2 DEGREES
REMARK 500 2 C A 7 O4' - C1' - N1 ANGL. DEV. = 5.2 DEGREES
REMARK 500 2 C A 8 O4' - C1' - N1 ANGL. DEV. = 5.1 DEGREES
REMARK 500 2 C B 3 O4' - C1' - N1 ANGL. DEV. = 5.4 DEGREES
REMARK 500 2 G B 6 O4' - C1' - N9 ANGL. DEV. = 4.3 DEGREES
REMARK 500 2 C B 7 O4' - C1' - N1 ANGL. DEV. = 5.0 DEGREES
REMARK 500 2 C B 8 O4' - C1' - N1 ANGL. DEV. = 4.9 DEGREES
REMARK 500 3 C A 3 O4' - C1' - N1 ANGL. DEV. = 5.8 DEGREES
REMARK 500 3 C A 7 O4' - C1' - N1 ANGL. DEV. = 5.5 DEGREES
REMARK 500 3 C A 8 O4' - C1' - N1 ANGL. DEV. = 5.2 DEGREES
REMARK 500 3 C B 3 O4' - C1' - N1 ANGL. DEV. = 4.5 DEGREES
REMARK 500 3 C B 7 O4' - C1' - N1 ANGL. DEV. = 5.0 DEGREES
REMARK 500 3 C B 8 O4' - C1' - N1 ANGL. DEV. = 5.3 DEGREES
REMARK 500 3 U B 9 O4' - C1' - N1 ANGL. DEV. = 4.7 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 1YFV RELATED DB: PDB
REMARK 900 1YFV IS THE TANDEM, SHEARED GA PAIRS IN THE SAME STEM, DETERMINED
REMARK 900 BY 2D NMR
REMARK 900 RELATED ID: 1GID RELATED DB: PDB
REMARK 900 1GID IS THE TANDEM, SHEARED AA PAIRS IN THE J4/5 LOOP OF
REMARK 900 TETRAHYMENA THERMOPHILA, DETERMINED BY X-RAY CRYSTALLOGRAPHY
REMARK 900 RELATED ID: 1MUV RELATED DB: PDB
REMARK 900 1MUV IS THE TANDEM, SHEARED AA PAIRS WITH SAME STEM
REMARK 900 RELATED ID: 1MV1 RELATED DB: PDB
REMARK 900 1MV1 IS THE TANDEM, SHEARED PA PAIRS IN 5'(RGGCPAGCCU)2
REMARK 900 RELATED ID: 1MV2 RELATED DB: PDB
REMARK 900 1MV2 IS THE TANDEM, FACE-TO-FACE AP PAIRS IN 5'(RGGCAPGCCU)2
DBREF 1MV6 A 1 9 PDB 1MV6 1MV6 1 9
DBREF 1MV6 B 1 9 PDB 1MV6 1MV6 1 9
SEQRES 1 A 9 G G C P5P P5P G C C U
SEQRES 1 B 9 G G C P5P P5P G C C U
MODRES 1MV6 P5P A 4 A PURINE RIBOSIDE-5'-MONOPHOSPHATE
MODRES 1MV6 P5P A 5 A PURINE RIBOSIDE-5'-MONOPHOSPHATE
MODRES 1MV6 P5P B 4 A PURINE RIBOSIDE-5'-MONOPHOSPHATE
MODRES 1MV6 P5P B 5 A PURINE RIBOSIDE-5'-MONOPHOSPHATE
HET P5P A 4 31
HET P5P A 5 31
HET P5P B 4 31
HET P5P B 5 31
HETNAM P5P PURINE RIBOSIDE-5'-MONOPHOSPHATE
FORMUL 1 P5P 4(C10 H13 N4 O7 P)
LINK O3' C A 3 P P5P A 4 1555 1555 1.61
LINK O3' P5P A 4 P P5P A 5 1555 1555 1.61
LINK O3' P5P A 5 P G A 6 1555 1555 1.62
LINK O3' C B 3 P P5P B 4 1555 1555 1.62
LINK O3' P5P B 4 P P5P B 5 1555 1555 1.61
LINK O3' P5P B 5 P G B 6 1555 1555 1.62
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - 23 20 Bytes