Header list of 1msz.pdb file
Complete list - b 23 2 Bytes
HEADER DNA BINDING PROTEIN 20-SEP-02 1MSZ
TITLE SOLUTION STRUCTURE OF THE R3H DOMAIN FROM HUMAN SMUBP-2
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: DNA-BINDING PROTEIN SMUBP-2;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: R3H DOMAIN;
COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: SMUBP-2;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: M15;
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PQE60
KEYWDS R3H FOLD, DNA BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR E.LIEPINSH,A.LEONCHIKS,A.SHARIPO,L.GUIGNARD,G.OTTING
REVDAT 5 23-FEB-22 1MSZ 1 REMARK SEQADV
REVDAT 4 24-FEB-09 1MSZ 1 VERSN
REVDAT 3 18-OCT-05 1MSZ 1 JRNL
REVDAT 2 30-OCT-02 1MSZ 1 SEQRES DBREF SEQADV REMARK
REVDAT 1 09-OCT-02 1MSZ 0
JRNL AUTH E.LIEPINSH,A.LEONCHIKS,A.SHARIPO,L.GUIGNARD,G.OTTING
JRNL TITL SOLUTION STRUCTURE OF THE R3H DOMAIN FROM HUMAN SMUBP-2
JRNL REF J.MOL.BIOL. V. 326 217 2003
JRNL REFN ISSN 0022-2836
JRNL PMID 12547203
JRNL DOI 10.1016/S0022-2836(02)01381-5
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : DYANA 1.5, OPAL 2.6
REMARK 3 AUTHORS : GUENTERT (DYANA), LUGINBUEHL (OPAL)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS:
REMARK 3 STRUCTURE BASED ON 663 NON-REDUNDANT NOES, 123 COUPLING CONSTANTS,
REMARK 3 AND 170 DIHEDRAL-ANGLE RESTRAINTS DERIVED FROM COUPLING CONSTANTS,
REMARK 3 NOE DATA AND PRELIMINARY STRUCTURE CALCULATIONS.
REMARK 3 THE NUMBER OF MISSING RESIDUES WAS SO MUCH THAT REMARK 465
REMARK 3 FOR THE MISSING RESIDUES LIST WERE REMOVED.
REMARK 4
REMARK 4 1MSZ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-SEP-02.
REMARK 100 THE DEPOSITION ID IS D_1000017158.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 298
REMARK 210 PH : 6.9
REMARK 210 IONIC STRENGTH : NO BUFFER ADDED
REMARK 210 PRESSURE : AMBIENT
REMARK 210 SAMPLE CONTENTS : 0.4MM R3H DOMAIN
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 2D TOCSY
REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ
REMARK 210 SPECTROMETER MODEL : DMX
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NULL
REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 80
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20
REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST
REMARK 210 RESTRAINT VIOLATIONS
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: DISTANCE RESTRAINTS COLLECTED FROM A NOESY SPECTRUM WITH
REMARK 210 40 MS MIXING TIME.
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 4 ARG A 768 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES
REMARK 500 16 ARG A 755 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 LYS A 741 -81.69 -60.22
REMARK 500 1 MET A 742 -66.32 -162.63
REMARK 500 1 SER A 749 -8.63 -56.39
REMARK 500 1 ASN A 751 -71.72 -59.19
REMARK 500 1 SER A 752 -65.87 -146.84
REMARK 500 1 HIS A 765 -148.48 -85.25
REMARK 500 1 GLU A 774 -66.39 -91.59
REMARK 500 1 LYS A 776 23.50 -73.01
REMARK 500 2 LYS A 741 -81.89 -67.43
REMARK 500 2 MET A 742 -65.85 -158.39
REMARK 500 2 ASN A 751 -71.87 -62.56
REMARK 500 2 SER A 752 -66.14 -146.76
REMARK 500 2 HIS A 765 -148.63 -81.43
REMARK 500 2 GLU A 774 -65.33 -96.11
REMARK 500 2 LYS A 776 23.63 -73.02
REMARK 500 3 LYS A 741 -77.97 -53.96
REMARK 500 3 MET A 742 -66.14 -166.41
REMARK 500 3 ASN A 751 -70.96 -65.40
REMARK 500 3 SER A 752 -66.37 -146.11
REMARK 500 3 HIS A 765 -148.51 -91.89
REMARK 500 3 LYS A 776 23.92 -68.28
REMARK 500 4 LYS A 741 -81.86 -59.40
REMARK 500 4 MET A 742 -66.27 -156.08
REMARK 500 4 SER A 752 -66.28 -146.37
REMARK 500 4 HIS A 765 -148.81 -97.30
REMARK 500 4 GLU A 774 -65.46 -126.20
REMARK 500 4 LYS A 776 36.29 -72.80
REMARK 500 5 LYS A 741 -81.85 -67.25
REMARK 500 5 MET A 742 -58.32 -157.48
REMARK 500 5 SER A 749 -11.58 -47.11
REMARK 500 5 SER A 752 -52.97 -146.48
REMARK 500 5 HIS A 765 -154.32 -83.15
REMARK 500 6 ASP A 727 -66.06 -109.74
REMARK 500 6 LYS A 741 -81.59 -65.05
REMARK 500 6 MET A 742 -66.36 -164.41
REMARK 500 6 ASN A 751 -71.46 -79.29
REMARK 500 6 SER A 752 -65.91 -146.05
REMARK 500 6 HIS A 765 -148.60 -82.67
REMARK 500 6 GLU A 774 -66.89 -126.99
REMARK 500 7 LYS A 741 -81.30 -54.29
REMARK 500 7 MET A 742 -66.43 -166.79
REMARK 500 7 ASN A 751 -70.74 -61.76
REMARK 500 7 SER A 752 -66.19 -146.06
REMARK 500 7 HIS A 765 -148.40 -78.10
REMARK 500 7 GLU A 774 -58.29 -126.50
REMARK 500 7 LYS A 776 43.16 -107.68
REMARK 500 8 LYS A 741 -81.86 -54.15
REMARK 500 8 MET A 742 -66.27 -166.72
REMARK 500 8 ASN A 751 -71.70 -72.71
REMARK 500 8 SER A 752 -55.22 -146.72
REMARK 500
REMARK 500 THIS ENTRY HAS 135 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: PLANAR GROUPS
REMARK 500
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS
REMARK 500 AN RMSD GREATER THAN THIS VALUE
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 M RES CSSEQI RMS TYPE
REMARK 500 2 ARG A 757 0.09 SIDE CHAIN
REMARK 500 8 ARG A 730 0.08 SIDE CHAIN
REMARK 500 11 ARG A 785 0.08 SIDE CHAIN
REMARK 500 12 ARG A 730 0.08 SIDE CHAIN
REMARK 500 13 ARG A 730 0.08 SIDE CHAIN
REMARK 500 14 ARG A 730 0.09 SIDE CHAIN
REMARK 500 15 ARG A 768 0.12 SIDE CHAIN
REMARK 500 16 ARG A 755 0.08 SIDE CHAIN
REMARK 500 16 ARG A 777 0.09 SIDE CHAIN
REMARK 500 16 ARG A 785 0.13 SIDE CHAIN
REMARK 500 17 ARG A 757 0.10 SIDE CHAIN
REMARK 500
REMARK 500 REMARK: NULL
DBREF 1MSZ A 711 786 UNP P38935 SMBP2_HUMAN 711 786
SEQADV 1MSZ MET A 709 UNP P38935 CLONING ARTIFACT
SEQADV 1MSZ GLY A 710 UNP P38935 CLONING ARTIFACT
SEQADV 1MSZ GLY A 787 UNP P38935 EXPRESSION TAG
SEQADV 1MSZ SER A 788 UNP P38935 EXPRESSION TAG
SEQADV 1MSZ HIS A 789 UNP P38935 EXPRESSION TAG
SEQADV 1MSZ HIS A 790 UNP P38935 EXPRESSION TAG
SEQADV 1MSZ HIS A 791 UNP P38935 EXPRESSION TAG
SEQADV 1MSZ HIS A 792 UNP P38935 EXPRESSION TAG
SEQADV 1MSZ HIS A 793 UNP P38935 EXPRESSION TAG
SEQADV 1MSZ HIS A 794 UNP P38935 EXPRESSION TAG
SEQRES 1 A 86 MET GLY SER LEU ASN GLY GLY SER PRO GLU GLY VAL GLU
SEQRES 2 A 86 SER GLN ASP GLY VAL ASP HIS PHE ARG ALA MET ILE VAL
SEQRES 3 A 86 GLU PHE MET ALA SER LYS LYS MET GLN LEU GLU PHE PRO
SEQRES 4 A 86 PRO SER LEU ASN SER HIS ASP ARG LEU ARG VAL HIS GLN
SEQRES 5 A 86 ILE ALA GLU GLU HIS GLY LEU ARG HIS ASP SER SER GLY
SEQRES 6 A 86 GLU GLY LYS ARG ARG PHE ILE THR VAL SER LYS ARG ALA
SEQRES 7 A 86 GLY SER HIS HIS HIS HIS HIS HIS
HELIX 1 1 VAL A 726 LYS A 740 1 15
HELIX 2 2 SER A 752 HIS A 765 1 14
SHEET 1 A 3 GLN A 743 PHE A 746 0
SHEET 2 A 3 PHE A 779 LYS A 784 -1 O ILE A 780 N PHE A 746
SHEET 3 A 3 LEU A 767 SER A 772 -1 N ASP A 770 O THR A 781
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - b 23 2 Bytes