Header list of 1mr0.pdb file
Complete list - t 27 2 Bytes
HEADER SIGNALING PROTEIN 17-SEP-02 1MR0
TITLE SOLUTION NMR STRUCTURE OF AGRP(87-120; C105A)
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: AGOUTI RELATED PROTEIN;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: RESIDUES 87-120;
COMPND 5 ENGINEERED: YES;
COMPND 6 MUTATION: YES;
COMPND 7 OTHER_DETAILS: THIS IS A RATIONALLY MINIMIZED FRAGMENT OF THE FULLY
COMPND 8 ACTIVE C-TERMINAL DOMAIN OF THE HUMAN AGOUTI-RELATED PROTEIN AGRP(87-
COMPND 9 132). THIS FRAGMENT HAS REMOVED FROM IT THE LARGELY DISORDERED C-
COMPND 10 TERMINAL 12 RESIDUES, YET RETAINS THE SAME BASIC STRUCTURAL AND
COMPND 11 FUNCTIONAL CHARACTERISTICS OF THE LARGER FRAGMENT.
SOURCE MOL_ID: 1;
SOURCE 2 SYNTHETIC: YES;
SOURCE 3 OTHER_DETAILS: THE PROTEIN WAS CHEMICALLY SYNTHESIZED. THE SEQUENCE
SOURCE 4 OF THE PROTEIN IS NATURALLY FOUND IN HOMO SAPIENS. THE SYNTHETIC
SOURCE 5 METHOD IS STANDARD SOLID-PHASE SYNTHESIS FOLLOWED BY AQUEOUS
SOURCE 6 OXIDATIVE FOLDING.
KEYWDS RATIONAL PROTEIN DESIGN, ICK, INHIBITOR CYSTINE KNOT, AGRP, AGOUTI-
KEYWDS 2 RELATED PROTEIN, MELANOCORTIN, SIGNALING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 40
AUTHOR P.J.JACKSON,J.C.MCNULTY,Y.K.YANG,D.A.THOMPSON,B.CHAI,I.GANTZ,
AUTHOR 2 G.S.BARSH,G.M.MILLHAUSER
REVDAT 4 27-OCT-21 1MR0 1 REMARK SEQADV
REVDAT 3 24-FEB-09 1MR0 1 VERSN
REVDAT 2 01-APR-03 1MR0 1 JRNL
REVDAT 1 02-OCT-02 1MR0 0
SPRSDE 02-OCT-02 1MR0 1MC6
JRNL AUTH P.J.JACKSON,J.C.MCNULTY,Y.K.YANG,D.A.THOMPSON,B.CHAI,
JRNL AUTH 2 I.GANTZ,G.S.BARSH,G.L.MILLHAUSER
JRNL TITL DESIGN, PHARMACOLOGY, AND NMR STRUCTURE OF A MINIMIZED
JRNL TITL 2 CYSTINE KNOT WITH AGOUTI-RELATED PROTEIN ACTIVITY.
JRNL REF BIOCHEMISTRY V. 41 7565 2002
JRNL REFN ISSN 0006-2960
JRNL PMID 12056887
JRNL DOI 10.1021/BI012000X
REMARK 1
REMARK 1 REFERENCE 1
REMARK 1 AUTH J.C.MCNULTY,D.A.THOMPSON,K.A.BOLIN,J.WILKEN,G.S.BARSH,
REMARK 1 AUTH 2 G.M.MILLHAUSER
REMARK 1 TITL HIGH RESOLUTION NMR STRUCTURE OF THE CHEMICALLY-SYNTHESIZED
REMARK 1 TITL 2 MELANOCORTIN RECEPTOR BINDING DOMAIN OF AGRP(87-132) OF THE
REMARK 1 TITL 3 AGOUTI-RELATED PROTEIN.
REMARK 1 REF BIOCHEMISTRY V. 40 15520 2001
REMARK 1 REFN ISSN 0006-2960
REMARK 1 DOI 10.1021/BI0117192
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : VNMR 6.1B, DYANA 1.5
REMARK 3 AUTHORS : KRISH KRISHAMURTHY, EVAN WILLIAMS, STEVE CHEATHUM,
REMARK 3 FRTIS VOSMAN, DAN IVERSON, MICHAEL CARLISLE, DAN
REMARK 3 STEELE, JAMES WELCH (VNMR), GUNTERT, P.,
REMARK 3 MUMENTHALER, C., AND WUTHRICH, K. (DYANA)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURE CALCULATIONS WERE ASSISTED
REMARK 3 WITH AUTOMATED ASSIGNMENT. FINAL STRUCTURES WERE CALCULATED
REMARK 3 USING 602 NOE-BASED UPPER LIMIT RESTRAINTS AND 23 ALPHA-TO-
REMARK 3 AMIDE 3-BOND J-COUPLING CONSTANTS.
REMARK 4
REMARK 4 1MR0 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-SEP-02.
REMARK 100 THE DEPOSITION ID IS D_1000017121.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 288; 288
REMARK 210 PH : 5.0; 4.0
REMARK 210 IONIC STRENGTH : 20 MM PERDEUTERATED ACETIC ACID;
REMARK 210 200 MM PERDEUTERATED ACETIC ACID
REMARK 210 PRESSURE : 1 ATM; 1 ATM
REMARK 210 SAMPLE CONTENTS : 1.7 MM AGRP(87-120 NATURAL
REMARK 210 ABUNDANCE OF ALL NUCLEI.; 1.6 MM
REMARK 210 AGRP(87-120; C105A), NATURAL
REMARK 210 ABUNDANCE OF ALL NUCLEI.
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D-NOESY; DQF-COSY; TOCSY;
REMARK 210 TOCSY(HX)
REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 500 MHZ
REMARK 210 SPECTROMETER MODEL : UNITYPLUS
REMARK 210 SPECTROMETER MANUFACTURER : VARIAN
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : MNMR 940501, DYANA 1.5, XEASY
REMARK 210 1.2
REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 1000
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 40
REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: THE NOESY, TOCSY AND DQF-COSY EXPERIMENTS WERE PERFORMED
REMARK 210 AT 800 MHZ; THE HX STUDY WAS CONDUCTED AT 500 MHZ.
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 HIS A 5 46.37 -84.40
REMARK 500 1 SER A 7 156.54 -39.46
REMARK 500 1 LEU A 9 115.59 -38.71
REMARK 500 1 CYS A 22 91.22 -65.92
REMARK 500 1 PHE A 26 -156.64 -90.35
REMARK 500 1 ALA A 29 -85.50 -148.56
REMARK 500 2 HIS A 5 45.62 -86.09
REMARK 500 2 SER A 7 148.89 -37.61
REMARK 500 2 CYS A 22 84.43 -61.15
REMARK 500 2 PHE A 26 -154.68 -83.58
REMARK 500 2 ALA A 29 -72.62 -155.79
REMARK 500 3 HIS A 5 45.43 -86.67
REMARK 500 3 SER A 7 141.43 -32.00
REMARK 500 3 PHE A 26 -156.39 -78.66
REMARK 500 3 ALA A 29 -79.80 -155.59
REMARK 500 4 HIS A 5 44.75 -93.35
REMARK 500 4 SER A 7 154.56 -37.16
REMARK 500 4 CYS A 22 84.35 -60.58
REMARK 500 4 PHE A 26 -155.60 -80.72
REMARK 500 4 ALA A 29 -80.01 -155.42
REMARK 500 5 HIS A 5 45.87 -87.96
REMARK 500 5 SER A 7 154.61 -36.97
REMARK 500 5 LEU A 9 117.43 -39.91
REMARK 500 5 CYS A 22 82.32 -61.23
REMARK 500 5 PHE A 26 -157.13 -91.31
REMARK 500 5 ALA A 29 -39.17 -155.89
REMARK 500 6 HIS A 5 47.15 -97.17
REMARK 500 6 SER A 7 150.95 -35.14
REMARK 500 6 CYS A 22 83.60 -62.01
REMARK 500 6 PHE A 26 -156.66 -80.31
REMARK 500 6 ALA A 29 -79.27 -155.43
REMARK 500 7 HIS A 5 45.61 -85.16
REMARK 500 7 SER A 7 151.56 -36.33
REMARK 500 7 CYS A 22 85.31 -63.96
REMARK 500 7 PHE A 26 -156.13 -80.98
REMARK 500 7 ALA A 29 -78.11 -155.60
REMARK 500 8 HIS A 5 47.14 -84.99
REMARK 500 8 SER A 7 149.30 -34.09
REMARK 500 8 CYS A 22 83.22 -61.85
REMARK 500 8 PHE A 26 -156.38 -80.38
REMARK 500 8 ALA A 29 -79.44 -155.57
REMARK 500 9 HIS A 5 48.68 -95.57
REMARK 500 9 SER A 7 157.38 -40.38
REMARK 500 9 LEU A 9 106.10 -47.77
REMARK 500 9 CYS A 22 84.63 -57.81
REMARK 500 9 PHE A 26 -156.23 -80.13
REMARK 500 9 ALA A 29 -79.04 -155.51
REMARK 500 10 HIS A 5 46.57 -92.25
REMARK 500 10 SER A 7 158.39 -42.08
REMARK 500 10 LEU A 9 107.29 -45.07
REMARK 500
REMARK 500 THIS ENTRY HAS 236 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 1HYK RELATED DB: PDB
REMARK 900 AGRP(87-132)
REMARK 900 RELATED ID: 1MC6 RELATED DB: PDB
REMARK 900 AGRP(87-120:C105A) NON-SUPERIMPOSED STRUCTURES, SAME STRUCTURE
REMARK 900 FAMILY
DBREF 1MR0 A 1 34 UNP O00253 AGRP_HUMAN 87 120
SEQADV 1MR0 ALA A 19 UNP O00253 CYS 105 ENGINEERED MUTATION
SEQRES 1 A 34 CYS VAL ARG LEU HIS GLU SER CYS LEU GLY GLN GLN VAL
SEQRES 2 A 34 PRO CYS CYS ASP PRO ALA ALA THR CYS TYR CYS ARG PHE
SEQRES 3 A 34 PHE ASN ALA PHE CYS TYR CYS ARG
SHEET 1 A 2 THR A 21 CYS A 24 0
SHEET 2 A 2 CYS A 31 ARG A 34 -1 O TYR A 32 N TYR A 23
SSBOND 1 CYS A 1 CYS A 16 1555 1555 2.00
SSBOND 2 CYS A 8 CYS A 22 1555 1555 2.11
SSBOND 3 CYS A 15 CYS A 33 1555 1555 1.99
SSBOND 4 CYS A 24 CYS A 31 1555 1555 1.98
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - t 27 2 Bytes