Header list of 1mkn.pdb file
Complete list - 23 202 Bytes
HEADER HEPARIN-BINDING GROWTH FACTOR 16-MAR-99 1MKN
TITLE N-TERMINAL HALF OF MIDKINE
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: PROTEIN (MIDKINE);
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: N-TERMINAL HALF;
COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 SYNTHETIC: YES;
SOURCE 3 OTHER_DETAILS: THE PROTEIN WAS CHEMICALLY SYNTHESIZED. THE SEQUENCE
SOURCE 4 OF THIS PROTEIN IS NATURALLY FOUND IN HOMO SAPIENS (HUMAN).
KEYWDS HEPARIN-BINDING GROWTH FACTOR
EXPDTA SOLUTION NMR
AUTHOR W.IWASAKI,K.NAGATA,H.HATANAKA,K.OGURA,T.INUI,T.KIMURA,T.MURAMATSU,
AUTHOR 2 K.YOSHIDA,M.TASUMI,F.INAGAKI
REVDAT 5 23-FEB-22 1MKN 1 REMARK
REVDAT 4 24-FEB-09 1MKN 1 VERSN
REVDAT 3 01-APR-03 1MKN 1 JRNL
REVDAT 2 21-APR-99 1MKN 1 REMARK
REVDAT 1 23-MAR-99 1MKN 0
JRNL AUTH W.IWASAKI,K.NAGATA,H.HATANAKA,T.INUI,T.KIMURA,T.MURAMATSU,
JRNL AUTH 2 K.YOSHIDA,M.TASUMI,F.INAGAKI
JRNL TITL SOLUTION STRUCTURE OF MIDKINE, A NEW HEPARIN-BINDING GROWTH
JRNL TITL 2 FACTOR.
JRNL REF EMBO J. V. 16 6936 1997
JRNL REFN ISSN 0261-4189
JRNL PMID 9384573
JRNL DOI 10.1093/EMBOJ/16.23.6936
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : X-PLOR 3.1
REMARK 3 AUTHORS : BRUNGER
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 1MKN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-MAR-99.
REMARK 100 THE DEPOSITION ID IS D_1000000661.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 300
REMARK 210 PH : 6.0
REMARK 210 IONIC STRENGTH : NULL
REMARK 210 PRESSURE : 1 ATM
REMARK 210 SAMPLE CONTENTS : 10% WATER/90% D2O
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY; COSY
REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ
REMARK 210 SPECTROMETER MODEL : UNITYPLUS 600
REMARK 210 SPECTROMETER MANUFACTURER : VARIAN
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : X-PLOR
REMARK 210 METHOD USED : DISTANCE GEOMETRY
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1
REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL
REMARK 210
REMARK 210 REMARK: MEAN STRUCTURE.
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 LYS A 3 46.41 -93.65
REMARK 500 LYS A 5 90.98 -47.35
REMARK 500 LYS A 8 151.86 57.03
REMARK 500 PRO A 11 -90.89 -78.25
REMARK 500 GLU A 14 145.66 -172.24
REMARK 500 CYS A 15 78.33 63.46
REMARK 500 GLU A 17 -88.85 -52.65
REMARK 500 TRP A 18 125.53 57.35
REMARK 500 ALA A 19 88.84 -57.20
REMARK 500 SER A 27 -97.41 -119.09
REMARK 500 LYS A 28 -132.72 -61.73
REMARK 500 CYS A 30 -104.72 178.41
REMARK 500 CYS A 39 -66.90 -120.96
REMARK 500 GLN A 42 -142.25 -114.99
REMARK 500 THR A 43 144.77 141.71
REMARK 500 GLN A 44 -167.12 165.24
REMARK 500 CYS A 48 132.77 -174.35
REMARK 500 PRO A 51 35.77 -79.17
REMARK 500 CYS A 52 60.49 39.19
REMARK 500 ASN A 53 33.71 -92.76
REMARK 500 GLU A 57 95.40 148.31
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: PLANAR GROUPS
REMARK 500
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS
REMARK 500 AN RMSD GREATER THAN THIS VALUE
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 M RES CSSEQI RMS TYPE
REMARK 500 ARG A 35 0.24 SIDE CHAIN
REMARK 500 ARG A 45 0.25 SIDE CHAIN
REMARK 500 ARG A 47 0.23 SIDE CHAIN
REMARK 500 ARG A 49 0.12 SIDE CHAIN
REMARK 500
REMARK 500 REMARK: NULL
DBREF 1MKN A 1 59 UNP P21741 MK_HUMAN 23 81
SEQRES 1 A 59 LYS LYS LYS ASP LYS VAL LYS LYS GLY GLY PRO GLY SER
SEQRES 2 A 59 GLU CYS ALA GLU TRP ALA TRP GLY PRO CYS THR PRO SER
SEQRES 3 A 59 SER LYS ASP CYS GLY VAL GLY PHE ARG GLU GLY THR CYS
SEQRES 4 A 59 GLY ALA GLN THR GLN ARG ILE ARG CYS ARG VAL PRO CYS
SEQRES 5 A 59 ASN TRP LYS LYS GLU PHE GLY
SHEET 1 B1 3 TRP A 20 PRO A 25 0
SHEET 2 B1 3 VAL A 32 CYS A 39 -1 O GLU A 36 N GLY A 21
SHEET 3 B1 3 GLN A 42 VAL A 50 -1 O ILE A 46 N ARG A 35
SSBOND 1 CYS A 15 CYS A 39 1555 1555 2.02
SSBOND 2 CYS A 23 CYS A 48 1555 1555 2.02
SSBOND 3 CYS A 30 CYS A 52 1555 1555 2.02
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
Complete list - 23 202 Bytes