Header list of 1mg8.pdb file
Complete list - c 21 2 Bytes
HEADER APOPTOSIS 15-AUG-02 1MG8
TITLE NMR STRUCTURE OF UBIQUITIN-LIKE DOMAIN IN MURINE PARKIN
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: PARKIN;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: UBIQUITIN-LIKE DOMAIN
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS;
SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE;
SOURCE 4 ORGANISM_TAXID: 10090;
SOURCE 5 STRAIN: BL21 (DE3);
SOURCE 6 PLASMID: PET28B
KEYWDS PARKINSON DISEASE, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE,
KEYWDS 2 RSGI, STRUCTURAL GENOMICS, APOPTOSIS
EXPDTA SOLUTION NMR
NUMMDL 10
AUTHOR M.TASHIRO,S.OKUBO,S.SHIMOTAKAHARA,H.HATANAKA,H.YASUDA,M.KAINOSHO,
AUTHOR 2 S.YOKOYAMA,H.SHINDO,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE
AUTHOR 3 (RSGI)
REVDAT 4 21-DEC-22 1MG8 1 SEQADV
REVDAT 3 23-FEB-22 1MG8 1 REMARK SEQADV
REVDAT 2 24-FEB-09 1MG8 1 VERSN
REVDAT 1 08-APR-03 1MG8 0
JRNL AUTH M.TASHIRO,S.OKUBO,S.SHIMOTAKAHARA,H.HATANAKA,H.YASUDA,
JRNL AUTH 2 M.KAINOSHO,S.YOKOYAMA,H.SHINDO
JRNL TITL NMR STRUCTURE OF UBIQUITIN-LIKE DOMAIN IN PARKIN: GENE
JRNL TITL 2 PRODUCT OF FAMILIAL PARKINSON'S DISEASE.
JRNL REF J.BIOMOL.NMR V. 25 153 2003
JRNL REFN ISSN 0925-2738
JRNL PMID 12652124
JRNL DOI 10.1023/A:1022254432039
REMARK 1
REMARK 1 REFERENCE 1
REMARK 1 AUTH T.KITADA,S.ASAKAWA,N.HATTORI,H.MATSUMINE,Y.YAMAMURA,
REMARK 1 AUTH 2 S.MINOSIMA,M.YOKOCHI,Y.MIZUNO,N.SHIMIZU
REMARK 1 TITL MUTATIONS IN THE PARKIN GENE CAUSES AUTOSOMAL RECESSIVE
REMARK 1 TITL 2 JUVENILE PARKINSONISM
REMARK 1 REF NATURE V. 392 605 1998
REMARK 1 REFN ISSN 0028-0836
REMARK 1 DOI 10.1038/33416
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : X-PLOR
REMARK 3 AUTHORS : BRUNGER
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 1MG8 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-AUG-02.
REMARK 100 THE DEPOSITION ID IS D_1000016892.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 298
REMARK 210 PH : 5.0
REMARK 210 IONIC STRENGTH : NULL
REMARK 210 PRESSURE : AMBIENT
REMARK 210 SAMPLE CONTENTS : 1MM UBIQUITIN-LIKE DOMAIN U
REMARK 210 -15N,13C; 25MM ACETATE BUFFER NA,
REMARK 210 2MM DITHIOTHREITOL-D10
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N
REMARK 210 -SEPARATED_NOESY
REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ
REMARK 210 SPECTROMETER MODEL : DMX; DRX; INOVA
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NMRPIPE
REMARK 210 METHOD USED : SIMULATED ANNEALING
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 50
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10
REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST
REMARK 210 ENERGY
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL
REMARK 210
REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR
REMARK 210 SPECTROSCOPY.
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 9 PHE A 9 CB - CG - CD2 ANGL. DEV. = -5.0 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 PHE A 9 96.64 -68.89
REMARK 500 1 ASN A 10 -131.31 61.61
REMARK 500 1 SER A 12 -1.43 77.60
REMARK 500 1 SER A 24 -142.40 -60.84
REMARK 500 1 ILE A 25 -31.11 -130.17
REMARK 500 1 ALA A 48 7.76 59.61
REMARK 500 1 ASP A 62 30.63 103.78
REMARK 500 1 GLU A 64 152.41 59.96
REMARK 500 1 GLN A 66 106.40 74.60
REMARK 500 1 SER A 67 130.38 -171.81
REMARK 500 1 ARG A 74 96.95 -39.57
REMARK 500 1 ARG A 77 92.98 -54.12
REMARK 500 2 ASN A 10 -90.78 62.12
REMARK 500 2 SER A 11 -71.12 -128.35
REMARK 500 2 SER A 24 -142.61 -61.24
REMARK 500 2 ASP A 62 36.61 155.02
REMARK 500 2 GLU A 64 -154.34 46.99
REMARK 500 2 GLN A 66 109.35 74.39
REMARK 500 2 SER A 67 129.84 -175.87
REMARK 500 2 ARG A 74 108.35 -53.64
REMARK 500 2 ARG A 77 92.28 -53.70
REMARK 500 3 ASN A 10 162.99 54.46
REMARK 500 3 SER A 11 -109.21 34.89
REMARK 500 3 TYR A 13 153.74 -48.12
REMARK 500 3 SER A 24 -142.81 69.31
REMARK 500 3 ILE A 25 -25.50 -144.15
REMARK 500 3 ASP A 62 32.77 109.13
REMARK 500 3 GLU A 64 -157.51 51.60
REMARK 500 3 GLN A 66 111.54 80.23
REMARK 500 3 SER A 67 129.72 -173.34
REMARK 500 3 ARG A 77 90.79 -55.90
REMARK 500 4 ASN A 10 -91.04 61.62
REMARK 500 4 SER A 11 -63.76 -165.30
REMARK 500 4 TYR A 13 -160.92 -105.30
REMARK 500 4 ILE A 25 -30.57 72.35
REMARK 500 4 ALA A 48 7.74 55.66
REMARK 500 4 ASP A 62 37.45 103.26
REMARK 500 4 LEU A 63 -83.23 -66.60
REMARK 500 4 GLU A 64 162.26 76.45
REMARK 500 4 GLN A 66 112.30 76.00
REMARK 500 4 SER A 67 118.58 -163.18
REMARK 500 4 ARG A 74 105.02 -48.24
REMARK 500 4 ARG A 77 92.33 -56.42
REMARK 500 5 ASN A 10 -84.62 68.18
REMARK 500 5 SER A 11 -32.09 -177.20
REMARK 500 5 SER A 24 -144.53 65.78
REMARK 500 5 ILE A 25 -28.26 -144.94
REMARK 500 5 GLU A 51 88.75 -48.36
REMARK 500 5 LEU A 56 162.74 -42.47
REMARK 500 5 ASP A 62 36.07 105.56
REMARK 500
REMARK 500 THIS ENTRY HAS 104 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: PLANAR GROUPS
REMARK 500
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS
REMARK 500 AN RMSD GREATER THAN THIS VALUE
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 M RES CSSEQI RMS TYPE
REMARK 500 1 ARG A 8 0.31 SIDE CHAIN
REMARK 500 1 ARG A 74 0.22 SIDE CHAIN
REMARK 500 1 ARG A 76 0.28 SIDE CHAIN
REMARK 500 1 ARG A 77 0.27 SIDE CHAIN
REMARK 500 1 ARG A 78 0.24 SIDE CHAIN
REMARK 500 2 ARG A 8 0.17 SIDE CHAIN
REMARK 500 2 ARG A 35 0.30 SIDE CHAIN
REMARK 500 2 ARG A 44 0.13 SIDE CHAIN
REMARK 500 2 ARG A 74 0.28 SIDE CHAIN
REMARK 500 2 ARG A 76 0.14 SIDE CHAIN
REMARK 500 2 ARG A 77 0.29 SIDE CHAIN
REMARK 500 2 ARG A 78 0.23 SIDE CHAIN
REMARK 500 3 ARG A 8 0.29 SIDE CHAIN
REMARK 500 3 ARG A 35 0.30 SIDE CHAIN
REMARK 500 3 ARG A 44 0.30 SIDE CHAIN
REMARK 500 3 ARG A 74 0.16 SIDE CHAIN
REMARK 500 3 ARG A 76 0.14 SIDE CHAIN
REMARK 500 3 ARG A 77 0.22 SIDE CHAIN
REMARK 500 3 ARG A 78 0.31 SIDE CHAIN
REMARK 500 4 ARG A 8 0.31 SIDE CHAIN
REMARK 500 4 ARG A 35 0.31 SIDE CHAIN
REMARK 500 4 ARG A 44 0.32 SIDE CHAIN
REMARK 500 4 ARG A 74 0.30 SIDE CHAIN
REMARK 500 4 ARG A 76 0.24 SIDE CHAIN
REMARK 500 4 ARG A 77 0.32 SIDE CHAIN
REMARK 500 4 ARG A 78 0.31 SIDE CHAIN
REMARK 500 5 ARG A 8 0.32 SIDE CHAIN
REMARK 500 5 ARG A 35 0.17 SIDE CHAIN
REMARK 500 5 ARG A 44 0.30 SIDE CHAIN
REMARK 500 5 ARG A 74 0.28 SIDE CHAIN
REMARK 500 5 ARG A 76 0.30 SIDE CHAIN
REMARK 500 5 ARG A 77 0.32 SIDE CHAIN
REMARK 500 5 ARG A 78 0.28 SIDE CHAIN
REMARK 500 6 ARG A 8 0.28 SIDE CHAIN
REMARK 500 6 ARG A 35 0.30 SIDE CHAIN
REMARK 500 6 ARG A 44 0.23 SIDE CHAIN
REMARK 500 6 ARG A 74 0.31 SIDE CHAIN
REMARK 500 6 ARG A 76 0.31 SIDE CHAIN
REMARK 500 6 ARG A 77 0.21 SIDE CHAIN
REMARK 500 6 ARG A 78 0.29 SIDE CHAIN
REMARK 500 7 ARG A 8 0.29 SIDE CHAIN
REMARK 500 7 ARG A 35 0.30 SIDE CHAIN
REMARK 500 7 ARG A 44 0.31 SIDE CHAIN
REMARK 500 7 ARG A 74 0.30 SIDE CHAIN
REMARK 500 7 ARG A 76 0.14 SIDE CHAIN
REMARK 500 7 ARG A 77 0.32 SIDE CHAIN
REMARK 500 8 ARG A 8 0.27 SIDE CHAIN
REMARK 500 8 ARG A 35 0.30 SIDE CHAIN
REMARK 500 8 ARG A 44 0.23 SIDE CHAIN
REMARK 500 8 ARG A 74 0.26 SIDE CHAIN
REMARK 500
REMARK 500 THIS ENTRY HAS 67 PLANE DEVIATIONS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: TRT001000160.1 RELATED DB: TARGETDB
DBREF 1MG8 A 3 78 UNP Q9WVS6 PRKN2_MOUSE 1 76
SEQADV 1MG8 MET A 1 UNP Q9WVS6 INITIATING METHIONINE
SEQADV 1MG8 GLY A 2 UNP Q9WVS6 CLONING ARTIFACT
SEQRES 1 A 78 MET GLY MET ILE VAL PHE VAL ARG PHE ASN SER SER TYR
SEQRES 2 A 78 GLY PHE PRO VAL GLU VAL ASP SER ASP THR SER ILE LEU
SEQRES 3 A 78 GLN LEU LYS GLU VAL VAL ALA LYS ARG GLN GLY VAL PRO
SEQRES 4 A 78 ALA ASP GLN LEU ARG VAL ILE PHE ALA GLY LYS GLU LEU
SEQRES 5 A 78 PRO ASN HIS LEU THR VAL GLN ASN CYS ASP LEU GLU GLN
SEQRES 6 A 78 GLN SER ILE VAL HIS ILE VAL GLN ARG PRO ARG ARG ARG
HELIX 1 1 ILE A 25 GLY A 37 1 13
SHEET 1 A 4 GLY A 14 GLU A 18 0
SHEET 2 A 4 ILE A 4 ARG A 8 -1 N VAL A 5 O VAL A 17
SHEET 3 A 4 ILE A 68 ILE A 71 1 O VAL A 69 N PHE A 6
SHEET 4 A 4 VAL A 45 PHE A 47 -1 N ILE A 46 O HIS A 70
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - c 21 2 Bytes