Header list of 1m7l.pdb file
Complete list - b 23 2 Bytes
HEADER SUGAR BINDING PROTEIN 22-JUL-02 1M7L
TITLE SOLUTION STRUCTURE OF THE COILED-COIL TRIMERIZATION DOMAIN FROM LUNG
TITLE 2 SURFACTANT PROTEIN D
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: PULMONARY SURFACTANT-ASSOCIATED PROTEIN D;
COMPND 3 CHAIN: A, B, C;
COMPND 4 FRAGMENT: TRIMERIC COILED-COIL DOMAIN;
COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEX-2T
KEYWDS COILED COIL, LUNG SURFACTANT PROTEIN, TRIMER, AMBIGUOUS DISTANCE
KEYWDS 2 RESTRAINTS, NMR-SPECTROSCOPY, SUGAR BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 21
AUTHOR H.KOVACS,S.I.O'DONOGHUE,H.-J.HOPPE,D.COMFORT,K.B.M.REID,I.D.CAMPBELL,
AUTHOR 2 M.NILGES
REVDAT 3 23-FEB-22 1M7L 1 REMARK SEQADV
REVDAT 2 24-FEB-09 1M7L 1 VERSN
REVDAT 1 27-NOV-02 1M7L 0
JRNL AUTH H.KOVACS,S.I.O'DONOGHUE,H.-J.HOPPE,D.COMFORT,K.B.M.REID,
JRNL AUTH 2 I.D.CAMPBELL,M.NILGES
JRNL TITL SOLUTION STRUCTURE OF THE COILED-COIL TRIMERIZATION DOMAIN
JRNL TITL 2 FROM LUNG SURFACTANT PROTEIN D
JRNL REF J.BIOMOL.NMR V. 24 89 2002
JRNL REFN ISSN 0925-2738
JRNL PMID 12495025
JRNL DOI 10.1023/A:1020980006628
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : XPLOR 3.851
REMARK 3 AUTHORS : A. T. BRUNGER
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS:
REMARK 3 NMR STRUCTURE CALCULATION USING THE SYMMETRY ADR METHOD
REMARK 3 (ADR=AMBIGUOUS DISTANCE RESTRAINTS) DEVELOPED FOR
REMARK 3 SYMMETRIC OLIGOMERS BY NILGES, M. (1993) PROTEINS
REMARK 3 17, 297-309; O'DONOGHUE, S. I.,
REMARK 3 KING, G. F. AND NILGES, M (1996) J. BIOMOL. NMR 8, 193-206.
REMARK 4
REMARK 4 1M7L COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-JUL-02.
REMARK 100 THE DEPOSITION ID IS D_1000016695.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 303
REMARK 210 PH : 4.4
REMARK 210 IONIC STRENGTH : NULL
REMARK 210 PRESSURE : NULL
REMARK 210 SAMPLE CONTENTS : NULL
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY; TOCSY; 15N-NOESY; 15N
REMARK 210 -TOCSY
REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ
REMARK 210 SPECTROMETER MODEL : OXFORD; HOME-ASSEBLED
REMARK 210 SPECTROMETER MANUFACTURER : NULL
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : ARIA
REMARK 210 METHOD USED : XPLOR USING THE AUTOMATED
REMARK 210 STRUCTURE CALCULATION ARIA
REMARK 210 ROUTINE
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 100
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 21
REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST
REMARK 210 ENERGY
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 HA2 GLY C 97 HE21 GLN C 100 1.31
REMARK 500 HA2 GLY A 17 HE21 GLN A 20 1.31
REMARK 500 HA2 GLY B 57 HE21 GLN B 60 1.33
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 LYS A 31 32.41 -97.98
REMARK 500 1 LEU A 34 -27.23 -172.84
REMARK 500 1 PRO A 36 -179.21 -65.62
REMARK 500 1 LYS B 71 31.39 -98.23
REMARK 500 1 LEU B 74 -27.18 -170.55
REMARK 500 1 PRO B 76 -179.19 -65.58
REMARK 500 1 LEU C 114 -28.56 -170.77
REMARK 500 2 LEU A 34 -31.43 -175.56
REMARK 500 2 PRO A 36 -158.97 -86.87
REMARK 500 2 ASN A 37 -152.27 -114.98
REMARK 500 2 LEU B 74 -31.38 -175.63
REMARK 500 2 PRO B 76 -159.53 -87.62
REMARK 500 2 ASN B 77 -151.85 -114.12
REMARK 500 2 LEU C 114 -32.10 -176.17
REMARK 500 2 PRO C 116 -159.20 -86.93
REMARK 500 2 ASN C 117 -149.40 -114.25
REMARK 500 3 LEU A 34 -29.14 -171.58
REMARK 500 3 LEU B 74 -30.29 -172.57
REMARK 500 3 LEU C 114 -33.31 -169.95
REMARK 500 4 GLU A 33 -126.29 -81.22
REMARK 500 4 LEU A 34 -75.42 62.45
REMARK 500 4 ASN A 37 -89.23 -102.96
REMARK 500 4 GLU B 73 -127.01 -81.28
REMARK 500 4 LEU B 74 -74.84 62.07
REMARK 500 4 ASN B 77 -89.39 -102.57
REMARK 500 4 GLU C 113 -124.41 -76.46
REMARK 500 4 LEU C 114 -84.85 59.88
REMARK 500 4 ASN C 117 -89.07 -102.74
REMARK 500 5 LEU A 34 -36.22 -177.71
REMARK 500 5 PRO A 36 -172.39 -65.51
REMARK 500 5 ASN A 37 -161.79 -100.32
REMARK 500 5 LEU B 74 -33.13 -176.28
REMARK 500 5 PRO B 76 -172.11 -65.63
REMARK 500 5 ASN B 77 -161.35 -100.47
REMARK 500 5 LEU C 114 -33.81 -177.74
REMARK 500 5 PRO C 116 -168.46 -65.52
REMARK 500 5 ASN C 117 -162.13 -104.62
REMARK 500 6 LEU A 34 -36.66 -167.92
REMARK 500 6 LEU B 74 -36.06 -167.72
REMARK 500 6 LEU C 114 -37.54 -167.39
REMARK 500 8 LEU A 34 -39.90 -164.04
REMARK 500 8 LEU B 74 -41.27 -162.20
REMARK 500 8 LEU C 114 -32.83 -167.32
REMARK 500 9 PHE A 35 -72.35 -41.32
REMARK 500 9 PHE B 75 -72.52 -41.16
REMARK 500 9 PHE C 115 -72.13 -40.41
REMARK 500 10 LEU A 34 -74.45 -54.82
REMARK 500 10 PHE A 35 53.03 -104.31
REMARK 500 10 LEU B 74 -74.22 -55.71
REMARK 500 10 PHE B 75 52.21 -104.28
REMARK 500
REMARK 500 THIS ENTRY HAS 100 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
DBREF 1M7L A 1 38 UNP P35247 SFTPD_HUMAN 220 257
DBREF 1M7L B 41 78 UNP P35247 SFTPD_HUMAN 220 257
DBREF 1M7L C 81 118 UNP P35247 SFTPD_HUMAN 220 257
SEQADV 1M7L GLY A 39 UNP P35247 CLONING ARTIFACT
SEQADV 1M7L ILE A 40 UNP P35247 CLONING ARTIFACT
SEQADV 1M7L GLY B 79 UNP P35247 CLONING ARTIFACT
SEQADV 1M7L ILE B 80 UNP P35247 CLONING ARTIFACT
SEQADV 1M7L GLY C 119 UNP P35247 CLONING ARTIFACT
SEQADV 1M7L ILE C 120 UNP P35247 CLONING ARTIFACT
SEQRES 1 A 40 GLY LEU PRO ASP VAL ALA SER LEU ARG GLN GLN VAL GLU
SEQRES 2 A 40 ALA LEU GLN GLY GLN VAL GLN HIS LEU GLN ALA ALA PHE
SEQRES 3 A 40 SER GLN TYR LYS LYS VAL GLU LEU PHE PRO ASN GLY GLY
SEQRES 4 A 40 ILE
SEQRES 1 B 40 GLY LEU PRO ASP VAL ALA SER LEU ARG GLN GLN VAL GLU
SEQRES 2 B 40 ALA LEU GLN GLY GLN VAL GLN HIS LEU GLN ALA ALA PHE
SEQRES 3 B 40 SER GLN TYR LYS LYS VAL GLU LEU PHE PRO ASN GLY GLY
SEQRES 4 B 40 ILE
SEQRES 1 C 40 GLY LEU PRO ASP VAL ALA SER LEU ARG GLN GLN VAL GLU
SEQRES 2 C 40 ALA LEU GLN GLY GLN VAL GLN HIS LEU GLN ALA ALA PHE
SEQRES 3 C 40 SER GLN TYR LYS LYS VAL GLU LEU PHE PRO ASN GLY GLY
SEQRES 4 C 40 ILE
HELIX 1 1 GLY A 1 LYS A 31 1 31
HELIX 2 2 GLY B 41 LYS B 71 1 31
HELIX 3 3 GLY C 81 LYS C 111 1 31
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - b 23 2 Bytes