Header list of 1lum.pdb file
Complete list - b 23 2 Bytes
HEADER TRANSFERASE 22-MAY-02 1LUM
TITLE NMR STRUCTURE OF THE ITK SH2 DOMAIN, PRO287TRANS, 20 LOW ENERGY
TITLE 2 STRUCTURES
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: TYROSINE-PROTEIN KINASE ITK/TSK;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: SRC HOMOLOGY 2 (SH2) DOMAIN (RESIDUES 238-344);
COMPND 5 SYNONYM: INTERLEUKIN-2 TYROSINE KINASE, T-CELL-SPECIFIC KINASE, IL-2-
COMPND 6 INDUCIBLE T-CELL KINASE, KINASE EMT, KINASE TLK;
COMPND 7 EC: 2.7.1.112;
COMPND 8 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS;
SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE;
SOURCE 4 ORGANISM_TAXID: 10090;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21;
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693;
SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21;
SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX
KEYWDS CIS/TRANS ISOMERIZATION, INTERLEUKIN-2 TYROSINE KINASE, ITK, T-CELL
KEYWDS 2 SPECIFIC KINASE, TSK, SRC HOMOLOGY 2, SH2, PROLINE, TRANSFERASE
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR R.J.MALLIS,K.N.BRAZIN,D.B.FULTON,A.H.ANDREOTTI
REVDAT 3 23-FEB-22 1LUM 1 REMARK SEQADV LINK
REVDAT 2 24-FEB-09 1LUM 1 VERSN
REVDAT 1 27-NOV-02 1LUM 0
JRNL AUTH R.J.MALLIS,K.N.BRAZIN,D.B.FULTON,A.H.ANDREOTTI
JRNL TITL STRUCTURAL CHARACTERIZATION OF A PROLINE-DRIVEN
JRNL TITL 2 CONFORMATIONAL SWITCH WITHIN THE ITK SH2 DOMAIN
JRNL REF NAT.STRUCT.BIOL. V. 9 900 2002
JRNL REFN ISSN 1072-8368
JRNL PMID 12402030
JRNL DOI 10.1038/NSB864
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : XWINNMR, CNS 1.0
REMARK 3 AUTHORS : BRUNGER (CNS)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON 2323 NOE
REMARK 3 -DERIVED DISTANCE CONSTRAINTS, 58 PHI/PSI DIHEDRAL ANGLE
REMARK 3 RESTRAINTS,9 CHI DIHEDRAL ANGLE RESTRAINTS AND 30 DISTANCE
REMARK 3 RESTRAINTS FROM HYDROGEN BONDS
REMARK 4
REMARK 4 1LUM COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUN-02.
REMARK 100 THE DEPOSITION ID IS D_1000016286.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 298
REMARK 210 PH : 7.4
REMARK 210 IONIC STRENGTH : 125MM
REMARK 210 PRESSURE : AMBIENT
REMARK 210 SAMPLE CONTENTS : 1 MM ITK SH2, U-15N,13C, 125MM
REMARK 210 PHOSPHATE BUFFER, PH 7.4; 1 MM
REMARK 210 ITK SH2, U-15N, 125MM PHOSPHATE
REMARK 210 BUFFER, PH 7.4; 1 MM ITK SH2,
REMARK 210 125MM PHOSPHATE BUFFER, PH 7.4
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N
REMARK 210 -SEPARATED_NOESY; DQF-COSY; 2D
REMARK 210 NOESY; 2D TOCSY
REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ
REMARK 210 SPECTROMETER MODEL : DRX
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NMRPIPE, NMRVIEW 4.1.3
REMARK 210 METHOD USED : DISTANCE GEOMETRY AND SIMULATED
REMARK 210 ANNEALING
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 200
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20
REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH FAVORABLE NON
REMARK 210 -BOND ENERGY
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O PHE A 34 H VAL A 109 1.14
REMARK 500 H LYS A 67 O TYR A 77 1.31
REMARK 500 O PRO A 88 H GLN A 92 1.33
REMARK 500 O LYS A 67 HA TYR A 76 1.34
REMARK 500 O ILE A 87 H ILE A 91 1.34
REMARK 500 H VAL A 47 O TYR A 64 1.37
REMARK 500 O TYR A 45 H ILE A 66 1.39
REMARK 500 H TYR A 76 O PHE A 84 1.46
REMARK 500 O TYR A 76 H PHE A 84 1.46
REMARK 500 O TRP A 11 H VAL A 36 1.48
REMARK 500 O MET A 35 H SER A 48 1.50
REMARK 500 H VAL A 49 O LYS A 62 1.50
REMARK 500 O TYR A 45 HD1 HIS A 65 1.50
REMARK 500 H ARG A 37 O THR A 46 1.51
REMARK 500 O VAL A 47 H TYR A 64 1.52
REMARK 500 O VAL A 49 H LYS A 62 1.52
REMARK 500 O ARG A 37 H THR A 46 1.52
REMARK 500 O ALA A 33 H PHE A 50 1.54
REMARK 500 H PHE A 34 O TYR A 107 1.54
REMARK 500 O ILE A 91 H GLN A 95 1.55
REMARK 500 O ALA A 21 H LEU A 25 1.55
REMARK 500 O GLU A 22 H LEU A 26 1.55
REMARK 500 HG2 LYS A 81 CD1 TYR A 82 1.55
REMARK 500 O ILE A 87 HG12 ILE A 91 1.56
REMARK 500 H MET A 35 O SER A 48 1.57
REMARK 500 OG1 THR A 28 HZ3 LYS A 30 1.58
REMARK 500 H ALA A 33 O PHE A 50 1.58
REMARK 500 O LYS A 20 H LEU A 24 1.60
REMARK 500 O PHE A 34 N VAL A 109 1.99
REMARK 500 OG1 THR A 44 O ILE A 66 2.09
REMARK 500 O GLU A 10 O VAL A 109 2.12
REMARK 500 O HIS A 94 O ARG A 104 2.13
REMARK 500 O ILE A 87 N ILE A 91 2.16
REMARK 500 O GLY A 43 OE2 GLU A 68 2.17
REMARK 500 O ARG A 18 OE1 GLU A 22 2.18
REMARK 500 N MET A 35 O SER A 48 2.18
REMARK 500 O THR A 41 N GLY A 43 2.19
REMARK 500 N LYS A 67 O TYR A 77 2.19
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 ASN A 5 91.68 -52.52
REMARK 500 1 LEU A 6 -106.84 -16.63
REMARK 500 1 GLU A 7 92.07 35.05
REMARK 500 1 THR A 8 -14.24 151.99
REMARK 500 1 SER A 15 6.41 50.86
REMARK 500 1 LYS A 30 97.41 -29.82
REMARK 500 1 GLU A 31 109.12 -36.48
REMARK 500 1 SER A 39 -84.34 -108.81
REMARK 500 1 ARG A 40 -33.80 153.06
REMARK 500 1 THR A 41 -157.51 -49.22
REMARK 500 1 PRO A 42 -4.92 -38.09
REMARK 500 1 LYS A 52 99.77 -12.99
REMARK 500 1 ILE A 55 -155.01 -177.36
REMARK 500 1 ASN A 58 -50.36 173.57
REMARK 500 1 PRO A 59 126.37 -33.16
REMARK 500 1 ASN A 70 85.04 12.14
REMARK 500 1 ASP A 71 152.30 -26.90
REMARK 500 1 SER A 72 78.31 79.24
REMARK 500 1 LYS A 74 174.70 40.20
REMARK 500 1 ARG A 75 -52.25 -131.51
REMARK 500 1 ALA A 79 38.72 165.53
REMARK 500 1 GLU A 80 29.17 37.24
REMARK 500 1 TYR A 82 108.36 10.62
REMARK 500 1 TYR A 96 -97.82 -106.44
REMARK 500 1 ASN A 97 -175.72 -43.56
REMARK 500 1 LEU A 101 144.88 52.06
REMARK 500 1 VAL A 102 -51.08 -23.04
REMARK 500 1 THR A 103 31.02 -154.43
REMARK 500 1 LEU A 105 80.22 55.77
REMARK 500 1 TYR A 107 101.84 -167.08
REMARK 500 2 ASN A 5 151.72 -28.71
REMARK 500 2 GLU A 7 -38.04 -21.76
REMARK 500 2 SER A 15 7.28 46.53
REMARK 500 2 SER A 17 -169.07 -125.28
REMARK 500 2 GLU A 31 108.95 -36.39
REMARK 500 2 ALA A 33 109.49 -42.37
REMARK 500 2 THR A 41 -166.36 -46.04
REMARK 500 2 PRO A 42 -3.87 -42.93
REMARK 500 2 ALA A 53 147.33 171.49
REMARK 500 2 ILE A 54 -93.84 25.71
REMARK 500 2 ILE A 55 -114.83 -129.30
REMARK 500 2 ASN A 70 49.73 -95.52
REMARK 500 2 ASP A 71 152.43 50.78
REMARK 500 2 LYS A 74 -168.54 -42.26
REMARK 500 2 TYR A 77 137.37 176.74
REMARK 500 2 VAL A 78 -78.29 -86.69
REMARK 500 2 GLU A 80 34.32 28.98
REMARK 500 2 TYR A 82 91.85 -4.67
REMARK 500 2 SER A 86 143.37 -171.31
REMARK 500 2 TYR A 96 -77.04 -104.80
REMARK 500
REMARK 500 THIS ENTRY HAS 581 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NH2 A 112
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 1LUI RELATED DB: PDB
REMARK 900 NMR STRUCTURE OF THE ITK SH2 DOMAIN, PRO287CIS, 20 LOW ENERGY
REMARK 900 STRUCTURES
REMARK 900 RELATED ID: 1LUK RELATED DB: PDB
REMARK 900 NMR STRUCTURE OF THE ITK SH2 DOMAIN, PRO287CIS, ENERGY MINIMIZED
REMARK 900 AVERAGED STRUCTURE
REMARK 900 RELATED ID: 1LUN RELATED DB: PDB
REMARK 900 NMR STRUCTURES OF THE ITK SH2 DOMAIN, PRO287TRANS ISOFORM,
REMARK 900 MINIMIZED AVERAGE STRUCTURE
DBREF 1LUM A 4 110 UNP Q03526 ITK_MOUSE 238 344
SEQADV 1LUM GLY A 111 UNP Q03526 CLONING ARTIFACT
SEQRES 1 A 110 ACE ASN ASN LEU GLU THR TYR GLU TRP TYR ASN LYS SER
SEQRES 2 A 110 ILE SER ARG ASP LYS ALA GLU LYS LEU LEU LEU ASP THR
SEQRES 3 A 110 GLY LYS GLU GLY ALA PHE MET VAL ARG ASP SER ARG THR
SEQRES 4 A 110 PRO GLY THR TYR THR VAL SER VAL PHE THR LYS ALA ILE
SEQRES 5 A 110 ILE SER GLU ASN PRO CYS ILE LYS HIS TYR HIS ILE LYS
SEQRES 6 A 110 GLU THR ASN ASP SER PRO LYS ARG TYR TYR VAL ALA GLU
SEQRES 7 A 110 LYS TYR VAL PHE ASP SER ILE PRO LEU LEU ILE GLN TYR
SEQRES 8 A 110 HIS GLN TYR ASN GLY GLY GLY LEU VAL THR ARG LEU ARG
SEQRES 9 A 110 TYR PRO VAL CYS GLY NH2
HET ACE A 3 6
HET NH2 A 112 3
HETNAM ACE ACETYL GROUP
HETNAM NH2 AMINO GROUP
FORMUL 1 ACE C2 H4 O
FORMUL 1 NH2 H2 N
HELIX 1 1 SER A 17 GLY A 29 1 13
HELIX 2 2 SER A 86 TYR A 96 1 11
SHEET 1 A 4 ILE A 61 HIS A 65 0
SHEET 2 A 4 TYR A 45 PHE A 50 -1 N VAL A 47 O TYR A 64
SHEET 3 A 4 ALA A 33 ASP A 38 -1 N ARG A 37 O THR A 46
SHEET 4 A 4 TYR A 107 PRO A 108 1 O TYR A 107 N PHE A 34
LINK C ACE A 3 N ASN A 4 1555 1555 1.33
LINK C GLY A 111 N NH2 A 112 1555 1555 1.33
CISPEP 1 SER A 72 PRO A 73 1 0.21
CISPEP 2 SER A 72 PRO A 73 2 0.13
CISPEP 3 SER A 72 PRO A 73 3 0.17
CISPEP 4 SER A 72 PRO A 73 4 -0.09
CISPEP 5 SER A 72 PRO A 73 5 0.08
CISPEP 6 SER A 72 PRO A 73 6 0.12
CISPEP 7 SER A 72 PRO A 73 7 -0.15
CISPEP 8 SER A 72 PRO A 73 8 0.22
CISPEP 9 SER A 72 PRO A 73 9 -0.05
CISPEP 10 SER A 72 PRO A 73 10 0.03
CISPEP 11 SER A 72 PRO A 73 11 -0.15
CISPEP 12 SER A 72 PRO A 73 12 0.19
CISPEP 13 SER A 72 PRO A 73 13 0.36
CISPEP 14 SER A 72 PRO A 73 14 -0.02
CISPEP 15 SER A 72 PRO A 73 15 -0.18
CISPEP 16 SER A 72 PRO A 73 16 -0.11
CISPEP 17 SER A 72 PRO A 73 17 -0.16
CISPEP 18 SER A 72 PRO A 73 18 0.15
CISPEP 19 SER A 72 PRO A 73 19 -0.03
CISPEP 20 SER A 72 PRO A 73 20 0.37
SITE 1 AC2 1 GLY A 111
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - b 23 2 Bytes