Header list of 1lms.pdb file
Complete list - 27 20 Bytes
HEADER ELECTRON TRANSPORT 02-MAY-02 1LMS
TITLE STRUCTURAL MODEL FOR AN ALKALINE FORM OF FERRICYTOCHROME C
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: CYTOCHROME C, ISO-1;
COMPND 3 CHAIN: A;
COMPND 4 ENGINEERED: YES;
COMPND 5 MUTATION: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE;
SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST;
SOURCE 4 ORGANISM_TAXID: 4932;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS ALKALINE TRANSITION; CYTOCHROME C; NMR STRUCTURE, ELECTRON TRANSPORT
EXPDTA SOLUTION NMR
MDLTYP MINIMIZED AVERAGE
AUTHOR M.ASSFALG,I.BERTINI,A.DOLFI,P.TURANO,A.G.MAUK,F.I.ROSELL,H.B.GRAY
REVDAT 3 27-OCT-21 1LMS 1 REMARK SEQADV LINK
REVDAT 2 24-FEB-09 1LMS 1 VERSN
REVDAT 1 18-MAR-03 1LMS 0
JRNL AUTH M.ASSFALG,I.BERTINI,A.DOLFI,P.TURANO,A.G.MAUK,F.I.ROSELL,
JRNL AUTH 2 H.B.GRAY
JRNL TITL STRUCTURAL MODEL FOR AN ALKALINE FORM OF FERRICYTOCHROME C
JRNL REF J.AM.CHEM.SOC. V. 125 2913 2003
JRNL REFN ISSN 0002-7863
JRNL PMID 12617658
JRNL DOI 10.1021/JA027180S
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : DYANA 1.5, AMBER 6.0
REMARK 3 AUTHORS : GUENTERT (DYANA), CASE AND KOLLMAN (AMBER)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 1LMS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAY-02.
REMARK 100 THE DEPOSITION ID IS D_1000016089.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 298
REMARK 210 PH : 11.1
REMARK 210 IONIC STRENGTH : 50 MM PHOSPHATE
REMARK 210 PRESSURE : 1 ATM
REMARK 210 SAMPLE CONTENTS : 2MM PROTEIN
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 2D TOCSY; 3D_15N
REMARK 210 -SEPARATED_NOESY
REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ
REMARK 210 SPECTROMETER MODEL : DRX
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : CORMA
REMARK 210 METHOD USED : SIMULATED ANNEALING IN TORSION
REMARK 210 ANGLE SPACE
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1
REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL
REMARK 210
REMARK 210 REMARK: THE COORDINATES OF RESIDUES -5 TO 8 ARE NOT INCLUDED,
REMARK 210 ALTHOUGH PRESENT IN THE SEQUENCE, BECAUSE NO CONSTRAINTS WERE
REMARK 210 AVAILABLE
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465 RES C SSSEQI
REMARK 465 THR A -4
REMARK 465 GLU A -3
REMARK 465 PHE A -2
REMARK 465 LYS A -1
REMARK 465 ALA A 0
REMARK 465 GLY A 1
REMARK 465 SER A 2
REMARK 465 ALA A 3
REMARK 465 LYS A 4
REMARK 465 LYS A 5
REMARK 465 GLY A 6
REMARK 465 ALA A 7
REMARK 465 THR A 8
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 TYR A 74 CB - CG - CD2 ANGL. DEV. = -4.2 DEGREES
REMARK 500 ILE A 75 CA - CB - CG2 ANGL. DEV. = 12.7 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 LYS A 11 -41.73 -26.14
REMARK 500 CYS A 14 51.22 -144.93
REMARK 500 VAL A 20 -34.83 -136.44
REMARK 500 LYS A 22 114.74 70.09
REMARK 500 LYS A 27 -86.44 27.05
REMARK 500 VAL A 28 -124.04 -101.15
REMARK 500 HIS A 33 -19.63 61.59
REMARK 500 SER A 40 -178.17 56.01
REMARK 500 GLU A 44 9.43 -63.79
REMARK 500 TYR A 48 7.72 -58.64
REMARK 500 THR A 49 10.70 -37.95
REMARK 500 ASP A 50 44.49 -178.98
REMARK 500 ALA A 51 -96.50 179.74
REMARK 500 ASP A 60 82.23 -176.57
REMARK 500 GLU A 61 -153.33 -169.81
REMARK 500 ASN A 62 -56.96 -149.03
REMARK 500 PRO A 71 71.51 -69.18
REMARK 500 ALA A 72 -40.14 -141.64
REMARK 500 TYR A 74 90.43 -169.05
REMARK 500 ALA A 79 -164.68 67.19
REMARK 500 MET A 80 -61.71 -172.55
REMARK 500 ALA A 81 29.12 -72.68
REMARK 500 LYS A 86 -43.92 -155.54
REMARK 500 GLU A 88 -100.24 35.77
REMARK 500 LYS A 89 38.38 -172.89
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS
REMARK 500
REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH
REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED
REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND
REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES.
REMARK 500 MODEL OMEGA
REMARK 500 HIS A 18 THR A 19 147.82
REMARK 500 GLU A 21 LYS A 22 139.75
REMARK 500 PRO A 25 HIS A 26 -142.13
REMARK 500 HIS A 26 LYS A 27 149.07
REMARK 500 LYS A 27 VAL A 28 -115.64
REMARK 500 TYR A 46 SER A 47 -121.93
REMARK 500 ASP A 60 GLU A 61 -143.14
REMARK 500 GLY A 77 THR A 78 -138.49
REMARK 500 ALA A 79 MET A 80 -129.26
REMARK 500 ALA A 81 PHE A 82 148.54
REMARK 500 PHE A 82 GLY A 83 118.74
REMARK 500 GLY A 84 LEU A 85 120.39
REMARK 500 LEU A 85 LYS A 86 -144.55
REMARK 500 LYS A 86 LYS A 87 -121.45
REMARK 500 LYS A 87 GLU A 88 149.94
REMARK 500 GLU A 88 LYS A 89 -138.91
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: PLANAR GROUPS
REMARK 500
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS
REMARK 500 AN RMSD GREATER THAN THIS VALUE
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 M RES CSSEQI RMS TYPE
REMARK 500 ARG A 38 0.14 SIDE CHAIN
REMARK 500 TYR A 46 0.11 SIDE CHAIN
REMARK 500 PHE A 82 0.17 SIDE CHAIN
REMARK 500 ARG A 91 0.13 SIDE CHAIN
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 HEC A 118 FE
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS A 18 NE2
REMARK 620 2 HEC A 118 NA 90.4
REMARK 620 3 HEC A 118 NB 91.9 90.6
REMARK 620 4 HEC A 118 NC 88.4 178.3 90.7
REMARK 620 5 HEC A 118 ND 83.3 90.3 175.2 88.4
REMARK 620 6 LYS A 73 NZ 169.6 93.1 97.8 87.9 86.9
REMARK 620 N 1 2 3 4 5
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC A 118
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 1YIC RELATED DB: PDB
REMARK 900 CONTAINS THE SOLUTION STRUCTURE OF THE NATIVE YEAST ISO-1-
REMARK 900 FERRICYTOCHROME C
DBREF 1LMS A -4 103 UNP P00044 CYC1_YEAST 1 108
SEQADV 1LMS ALA A 72 UNP P00044 LYS 77 ENGINEERED MUTATION
SEQADV 1LMS ALA A 79 UNP P00044 LYS 84 ENGINEERED MUTATION
SEQADV 1LMS THR A 102 UNP P00044 CYS 107 ENGINEERED MUTATION
SEQRES 1 A 108 THR GLU PHE LYS ALA GLY SER ALA LYS LYS GLY ALA THR
SEQRES 2 A 108 LEU PHE LYS THR ARG CYS LEU GLN CYS HIS THR VAL GLU
SEQRES 3 A 108 LYS GLY GLY PRO HIS LYS VAL GLY PRO ASN LEU HIS GLY
SEQRES 4 A 108 ILE PHE GLY ARG HIS SER GLY GLN ALA GLU GLY TYR SER
SEQRES 5 A 108 TYR THR ASP ALA ASN ILE LYS LYS ASN VAL LEU TRP ASP
SEQRES 6 A 108 GLU ASN ASN MET SER GLU TYR LEU THR ASN PRO ALA LYS
SEQRES 7 A 108 TYR ILE PRO GLY THR ALA MET ALA PHE GLY GLY LEU LYS
SEQRES 8 A 108 LYS GLU LYS ASP ARG ASN ASP LEU ILE THR TYR LEU LYS
SEQRES 9 A 108 LYS ALA THR GLU
HET HEC A 118 75
HETNAM HEC HEME C
FORMUL 2 HEC C34 H34 FE N4 O4
HELIX 1 1 LEU A 9 CYS A 14 1 6
HELIX 2 2 ALA A 51 ASN A 56 1 6
HELIX 3 3 ASN A 62 ASN A 70 1 9
HELIX 4 4 LYS A 89 GLU A 103 1 15
SHEET 1 A 2 ARG A 38 HIS A 39 0
SHEET 2 A 2 LEU A 58 TRP A 59 -1 O TRP A 59 N ARG A 38
LINK SG CYS A 14 CAB HEC A 118 1555 1555 1.83
LINK SG CYS A 17 CAC HEC A 118 1555 1555 1.81
LINK NE2 HIS A 18 FE HEC A 118 1555 1555 1.96
LINK NZ LYS A 73 FE HEC A 118 1555 1555 2.04
SITE 1 AC1 12 CYS A 14 GLN A 16 CYS A 17 HIS A 18
SITE 2 AC1 12 VAL A 28 LEU A 32 GLY A 41 TYR A 48
SITE 3 AC1 12 ASN A 52 TRP A 59 LYS A 73 PHE A 82
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
Complete list - 27 20 Bytes